Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts

Brittany Rife Magalis; Sergei L Kosakovsky Pond; Michael F Summers; Marco Salemi

doi:10.1093/ve/vey018

Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts

Virus Evolution ◽

10.1093/ve/vey018 ◽

2018 ◽

Vol 4 (1) ◽

Author(s):

Brittany Rife Magalis ◽

Sergei L Kosakovsky Pond ◽

Michael F Summers ◽

Marco Salemi

Keyword(s):

Rna Structure ◽

Envelope Gp120

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Analysis of the mutant picornavirus RNA-dependent RNA polymerase with disrupted primary and secondary RNA structure (RdRPΔrna)-dependent transcriptome in human THP-1 monocytic leukemia cells

NURSA Datasets ◽

10.1621/rpyqt9c0or ◽

2017 ◽

Author(s):

EM Poeschla ◽

M Rodriguez

Keyword(s):

Rna Polymerase ◽

Rna Structure ◽

Leukemia Cells ◽

Monocytic Leukemia ◽

Rna Dependent Rna Polymerase

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Faculty Opinions recommendation of RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1024946.293765 ◽

2005 ◽

Author(s):

Douglas Turner

Keyword(s):

Structure Analysis ◽

Rna Structure ◽

Primer Extension ◽

Single Nucleotide ◽

Nucleotide Resolution ◽

Single Nucleotide Resolution

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Faculty Opinions recommendation of A phylogenetically conserved RNA structure in the poliovirus open reading frame inhibits the antiviral endoribonuclease RNase L.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1074754.527669 ◽

2007 ◽

Author(s):

David Evans

Keyword(s):

Rna Structure ◽

Open Reading Frame ◽

Rnase L ◽

Reading Frame

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Faculty Opinions recommendation of The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1103448.572528 ◽

2008 ◽

Author(s):

Pascale Legault

Keyword(s):

Rna Structure ◽

Sequence Data

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Faculty Opinions recommendation of Adaptation of HIV-1 envelope gp120 to humoral immunity at a population level.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.5616956.6715055 ◽

2010 ◽

Author(s):

Leonidas Stamatatos ◽

Noah Sather

Keyword(s):

Humoral Immunity ◽

Population Level ◽

Hiv 1 ◽

Envelope Gp120

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Faculty Opinions recommendation of Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718206674.793490728 ◽

2014 ◽

Author(s):

Pascale Legault

Keyword(s):

Rna Structure ◽

Genome Wide

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Faculty Opinions recommendation of The cellular environment stabilizes adenine riboswitch RNA structure.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718173421.793487602 ◽

2013 ◽

Author(s):

David Cowburn ◽

Camille Cheng

Keyword(s):

Rna Structure ◽

Cellular Environment

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Faculty Opinions recommendation of m(1)A and m(1)G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.726596185.793521913 ◽

2017 ◽

Author(s):

Michael Sattler ◽

Andreas Schlundt

Keyword(s):

Rna Structure ◽

Base Pairs

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Faculty Opinions recommendation of Classification of RNA structure change by 'gazing' at experimental data.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.727248390.793535934 ◽

2017 ◽

Author(s):

David Mathews

Keyword(s):

Experimental Data ◽

Rna Structure ◽

Structure Change

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Faculty Opinions recommendation of RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.727254907.793534006 ◽

2017 ◽

Author(s):

Douglas Turner

Keyword(s):

Rna Structure ◽

Structure Prediction ◽

Rna Structure Prediction

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