scholarly journals Genome-Wide Function, Evolutionary Characterization and Expression Analysis of Sugar Transporter Family Genes in Pear (Pyrus bretschneideriRehd)

2015 ◽  
Vol 56 (9) ◽  
pp. 1721-1737 ◽  
Author(s):  
Jia-ming Li ◽  
Dan-man Zheng ◽  
Lei-ting Li ◽  
Xin Qiao ◽  
Shu-wei Wei ◽  
...  
Keyword(s):  
Expression Analysis ◽  
Sugar Transporter ◽  
Transporter Family ◽  
Genome Wide

scholarly journals Genome‐wide Characterization and Expression Analysis of Sugar Transporter Family Genes in Woodland Strawberry

2018 ◽  
Vol 11 (3) ◽  
pp. 170103 ◽  
Author(s):  
Songtao Jiu ◽  
Muhammad Salman Haider ◽  
Mahantesh M. Kurjogi ◽  
Kekun Zhang ◽  
Xudong Zhu ◽  
...  
Keyword(s):  
Expression Analysis ◽  
Sugar Transporter ◽  
Woodland Strawberry ◽  
Transporter Family ◽  
Genome Wide

scholarly journals The Sugar Transporter Inventory of Tomato: Genome-Wide Identification and Expression Analysis

2014 ◽  
Vol 55 (6) ◽  
pp. 1123-1141 ◽  
Author(s):  
Stefan Reuscher ◽  
Masahito Akiyama ◽  
Tomohide Yasuda ◽  
Haruko Makino ◽  
Koh Aoki ◽  
...  
Keyword(s):  
Expression Analysis ◽  
Sugar Transporter ◽  
Tomato Genome ◽  
Genome Wide

scholarly journals The Sugar Transporter family in wheat (Triticum aestivum. L): genome-wide identification, classification, and expression profiling during stress in seedlings

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11371
Author(s):  
Hongzhan Liu ◽  
Chaoqiong Li ◽  
Lin Qiao ◽  
Lizong Hu ◽  
Xueqin Wang ◽  
...  
Keyword(s):  
Plant Growth ◽  
Stress Tolerance ◽  
Expression Profiles ◽  
Gene Clusters ◽  
Triticum Aestivum L ◽  
Pcr Analysis ◽  
Sugar Transporter ◽  
Wheat Seedlings ◽  
Transporter Family ◽  
Genome Wide

The sugar transporter protein (STP) plays a crucial role in regulating plant growth and stress tolerance. We performed genome-wide identification and expression analysis of the STP gene family to investigate the STPSs’ potential roles in the growth of wheat seedlings under stress. Here, a total of 81 TaSTP genes containing the Sugar_tr conserved motif were identified within the wheat genome. Bioinformatic studies including phylogenetic tree, chromosome position, and tandem repeat were performed to analyze the identified genes. The 81 TaSTP genes can be classified into five main groups according to their structural and phylogenetic features, with several subgroups, which were located separately on chromosomes A, B, and D. Moreover, six gene clusters were formed with more than three genes each. The results of three comparative syntenic maps of wheat associated with three representative species suggested that STP genes have strong relationships in monocots. qRT-PCR analysis confirmed that most TaSTP genes displayed different expression profiles after seedlings were subjected to six days of different stress (10% PEG6000, 150 mM NaCl, and their combination, respectively), suggesting that these genes may be involved in regulating plant growth and stress tolerance. In conclusion, 81 TaSTP genes were identified and their expressions changed under stress, indicating TaSTP’s potential roles in wheat growth monosaccharide distribution is regulated.

scholarly journals Genome-wide identification of cyclin-dependent kinase (CDK) genes affecting adipocyte differentiation in cattle

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Cuili Pan ◽  
Zhaoxiong Lei ◽  
Shuzhe Wang ◽  
Xingping Wang ◽  
Dawei Wei ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Adipocyte Differentiation ◽  
Bos Taurus ◽  
Adipogenic Differentiation ◽  
Critical Role ◽  
Bos Indicus ◽  
Specific Expression ◽  
Genome Wide ◽  
A Genome

Abstract Background Cyclin-dependent kinases (CDKs) are protein kinases regulating important cellular processes such as cell cycle and transcription. Many CDK genes also play a critical role during adipogenic differentiation, but the role of CDK gene family in regulating bovine adipocyte differentiation has not been studied. Therefore, the present study aims to characterize the CDK gene family in bovine and study their expression pattern during adipocyte differentiation. Results We performed a genome-wide analysis and identified a number of CDK genes in several bovine species. The CDK genes were classified into 8 subfamilies through phylogenetic analysis. We found that 25 bovine CDK genes were distributed in 16 different chromosomes. Collinearity analysis revealed that the CDK gene family in Bos taurus is homologous with Bos indicus, Hybrid-Bos taurus, Hybrid Bos indicus, Bos grunniens and Bubalus bubalis. Several CDK genes had higher expression levels in preadipocytes than in differentiated adipocytes, as shown by RNA-seq analysis and qPCR, suggesting a role in the growth of emerging lipid droplets. Conclusion In this research, 185 CDK genes were identified and grouped into eight distinct clades in Bovidae, showing extensively homology. Global expression analysis of different bovine tissues and specific expression analysis during adipocytes differentiation revealed CDK4, CDK7, CDK8, CDK9 and CDK14 may be involved in bovine adipocyte differentiation. The results provide a basis for further study to determine the roles of CDK gene family in regulating adipocyte differentiation, which is beneficial for beef quality improvement.

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