scholarly journals A simple, rapid, high-fidelity and cost-effective PCR-based two-step DNA synthesis method for long gene sequences

2004 ◽  
Vol 32 (12) ◽  
pp. e98-e98 ◽  
Author(s):  
A.-S. Xiong
2020 ◽  
Vol 25 (4) ◽  
Author(s):  
Michael J. Kamdar ◽  
J. William Efcavitch

This article provides an overview of the emerging technology of enzymatic DNA synthesis, which holds the promise of making the business of writing DNA cost-effective, faster, sustainable, and more accurate compared to the traditional DNA synthesis method of phosphoramidite chemistry. Enzymatic DNA synthesis lends itself to various business models to realize the enormous opportunities across established and emerging industries that can be transformed with the reliable and affordable creation of long, high-quality, sequence specific DNA or, in the case of DNA data storage, the template-independent creation of DNA in nontoxic solutions without the need for post-synthesis processing. This review includes a discussion of potential verticals, such as life sciences – which includes gene editing, synthetic biology, precision medicine, DNA nanotechnology, and RNA vaccine development – as well as DNA data storage. Enzymatic DNA synthesis is being rapidly advanced to a commercial reality, with the first enzymatically synthesized DNA products to enter the market in the next year.


2021 ◽  
Vol 335 ◽  
pp. 03008
Author(s):  
Khizar Mushtaq ◽  
Pui May Chou ◽  
Chin Wei Lai

Tungsten being a transition element, forms oxide compounds of various oxidation states that enables it to form nanocolloids of tungsten oxide dihydrate. Multiple methods have been used in recent years to synthesize nano tungsten oxide dihydrate, including sol-gel synthesis, electrochemical deposition, hydrothermal synthesis and anodization. However, a universally accepted synthesis method for this material is not offered. The most appropriate method and its corresponding processing parameters for the synthesis of nano tungsten oxide dihydrate colloids were presented in the present study. The objective of the present study was to investigate the effect of processing parameters, i.e. applied voltage, temperature and anodizing duration on the particle size of nanocolloids. It is found that anodization is the easiest, efficient, and cost-effective method to synthesize the colloidal solution of nano tungsten oxide dihydrate. Conducting the synthesis at room temperature at a voltage of 50 V for 60 minutes yields the product with particle size of 40 – 60 nm, which can be used in wide array of applications. This paper also highlights the research gaps for future work and gives recommendations to extend this study particularly for the industrial application of tungsten oxide.


2021 ◽  
Author(s):  
Kerou Zhang ◽  
Alessandro Pinto ◽  
Peng Dai ◽  
Michael Wang ◽  
Lauren Yuxuan Cheng ◽  
...  

Effective polymerase chain reactions (PCR) are important in bio-laboratories. It is essential to detect rare DNA-sequence variants for early cancer diagnosis or for drug-resistance mutations identification. Some of the common detection quantitative PCR (qPCR) methods are restricted in the limit of detection (LoD) because of the high polymerase misincorporation rate in Taq DNA polymerases. High-fidelity (HiFi) DNA polymerases have a 50- to 250-fold higher fidelity. Yet, there are currently no proper designs for multiplexed HiFi qPCR reactions. Moreover, the popularity of targeting highly multiplex DNA sequences requires minimizing PCR side products, as the potential of dimerization grows quadratically as the plexes of primers increases. Efforts tried before were either an add-on step, or technology-specific, or requiring high-level computing skills. There lacks an easy-to-apply and cost-effective method for dimerization reduction. Here, we presented the Occlusion System, composed of a 5'-overhanged primer and a probe with a short-stem hairpin. We demonstrated that it allowed multiplexing high-fidelity qPCR reaction, it was also compatible with the current variant-enrichment method to improve the LoD by 10-fold. Further, we found that the Occlusion System reduced the dimerization up to 10-fold in highly multiplexed PCR. Thus, the Occlusion System satisfactorily improved both qPCR sensitivity and PCR efficiency.


2021 ◽  
Vol 108 ◽  
pp. 106367
Author(s):  
Jiseop Lim ◽  
Minwoo Kim ◽  
Seungtae Kim ◽  
Solkeun Jee ◽  
Donghun Park

2019 ◽  
Vol 2019 ◽  
pp. 1-10 ◽  
Author(s):  
Bhavika Turakhia ◽  
Saujanya Chikkala ◽  
Sejal Shah

The current focus of nanotechnology is to develop environmentally safe methodologies for the formulation of nanoparticles. The phytochemistry of Zingiber officinale inspired us to utilize it for the synthesis of iron nanoparticles. GC-MS analysis revealed the phytochemical profile of ginger. Out of 20 different chemicals, gingerol was found to be the most potent phytochemical with a retention time of 40.48 min. The present study reports a rapid synthesis method for the formation of iron nanoparticles and its potential efficacy as an antibacterial agent and an antioxidant. Because of its antibacterial property, ginger extract was used to coat surgical cotton. Synthesized ginger root iron nanoparticles (GR-FeNPs) were characterized by UV-visible spectroscopy, Fourier-transform infrared spectroscopy (FT-IR), X-ray diffraction analysis, and particle size analysis. XRD confirmed the crystalline structure of iron oxide nanoparticles as it showed the crystal plane (2 2 0), (3 1 1), (2 2 2), and (4 0 0). The particle size analyzer (PSA) showed the average size of the particles, 56.2 nm. The antimicrobial activity of the FeNPs was tested against different Gram-positive and Gram-negative bacteria. E. coli showed maximum inhibition as compared with the other organisms. Antioxidant activity proved the maximum rate of free radicals at 160 µg/mL produced by nanoparticles. In addition, the antimicrobial activity of nanocoated surgical cotton was evaluated on the first day and 30th day after coating, which clearly showed excellent growth inhibition of organisms, setting a new path in the field of medical microbiology. Hence, iron-nanocoated surgical cotton synthesized using green chemistry, which is antimicrobial and cost effective, might be economically helpful and provide insights to the medical field, replacing conventional wound healing treatments, for better prognosis.


2020 ◽  
Vol 38 (15_suppl) ◽  
pp. 11007-11007
Author(s):  
Sam Brondfield ◽  
Derek Harmon ◽  
Dylan Romero ◽  
Jenny Tai ◽  
Gerald Hsu

11007 Background: Hematology/oncology fellows must achieve bone marrow biopsy proficiency. However, a cost-effective, high-fidelity system to practice these procedures has not been described. Other specialties utilize 3D printing to practice procedures. Using design thinking, we developed, implemented, and evaluated a bone marrow biopsy training session with 3D pelvis models. Methods: We printed two models using an NIH template and optimized them through iterative prototyping. We covered a hole at the intended biopsy site with a replaceable cap simulating cortical bone, used cork as medullary bone, and used sand and water as marrow. Caps of two densities simulated softer and harder bone. Fellows could lift silicone skin pads to view anatomy. A flat base minimized movement. In July 2019, we conducted a one-hour practice session (“3D session”) with eight fellows during orientation. After an anatomy review, fellows practiced biopsies using the models with faculty feedback. Fellows also attended a one-hour session with a hematologist demonstrating a biopsy on a patient (“patient session”), the only session offered in previous years. We used a t-test to compare course ratings and pre/post-orientation self-assessed comfort with biopsies (5-point scales). Six months later, we surveyed attendings about fellow biopsy skill and success rate compared to prior years. S.B. conducted a content analysis of a focus group with four fellows and email feedback from one fellow. Results: Fellows rated the 3D and patient sessions highly (4.50 vs 4.75, p = 0.51). Procedural comfort improved significantly after orientation (2.13 to 3.63, p = 0.03). Attendings noted no difference between the 2019 fellows and prior years. Fellows called the 3D session “helpful” and “high-yield.” They praised the opportunity to practice repeatedly with high-fidelity anatomy, rehearse mechanics, receive feedback, and internalize anatomy and muscle memory for later recall. Fellows noted that the model did not allow for patient positioning practice and that the denser cap was too hard. Fellows suggested incorporating a female pelvis and more soft tissue. Conclusions: We developed, implemented, and evaluated a design-based bone marrow biopsy training session. Though we did not find outcome differences compared to traditional training, 3D printing represents a feasible, cost-effective, and high-fidelity educational tool. 3D sessions, in conjunction with patient sessions, may augment understanding of anatomy and provide opportunities for practice and feedback. Future iterations should incorporate user feedback to optimize model fidelity and utility.


DNA Repair ◽  
2015 ◽  
Vol 32 ◽  
pp. 3-9 ◽  
Author(s):  
Bret D. Freudenthal ◽  
William A. Beard ◽  
Samuel H. Wilson
Keyword(s):  

2014 ◽  
Vol 938 ◽  
pp. 140-144 ◽  
Author(s):  
S. Blessi ◽  
S. Vijayalakshmi ◽  
S. Pauline

Multiferroics have been known as materials exhibiting both ferroelectric and ferromagnetic properties in same phase, they have interesting physical properties as well as possibility of practical application in some new memories, spintronics and sensor devices. The present work reports the fabrication of pure and Nickel substituted Bismuth Ferrite by simple hydrothermal method at 180oC for 11 hours. The structural study was carried out using X-ray powder diffraction (XRD), and the Dielectric properties were investigated over a wide range of frequency and temperature. The image of SEM is in good agreement with the XRD analysis. The synthesis method is simple and cost effective. KEYWORDS: Multiferroics; Dielectric loss; Hydrothermal method; XRD.


2011 ◽  
Vol 11 (5) ◽  
pp. 505-515 ◽  
Author(s):  
Natalia Chubar

Highly selective materials and effective technologies are needed to meet the increasingly stronger drinking water standards for targeted ionic species. Inorganic ion exchangers based on individual and mixed-metal hydrous oxides (or mixed adsorbents that contain inorganic ion exchangers in their composition) are adsorptive materials that are capable of lowering the concentrations of anionic contaminants, such as H2AsO4−, H3AsO3, F−, Br−, BrO3−, HSeO4−, HSeO3− and H3BO3, to 10 μg/L or less. To achieve a higher selectivity towards arsenate, a new ion exchanger based on Mg–Al hydrous oxides was developed by a novel, cost-effective and environmentally friendly synthesis method via a non-traditional (alkoxide-free) sol-gel approach. The exceptional adsorptive capacity of the Mg–Al hydrous oxides towards H2AsO4− (up to 200 mg[As]/gdw) is due to the high affinity of this sorbent towards arsenate (steep equilibrium isotherms) and its fast adsorption kinetics. Because of the mesoporous (as determined by N2 adsorption and SEM) and layered (as determined by XRD and FTIR) structure of the ion-exchange material as well as the abundance of anion exchange sites (as determined by XPS and potentiometric titration) on its surface the material demonstrated very competitive (or very high) removal capacity towards other targeted anions, including fluoride, bromide, bromate, selenate, selenite, and borate.


2012 ◽  
Vol 629 ◽  
pp. 279-283 ◽  
Author(s):  
Rameshwar Rao ◽  
C. Shilpa Chakra ◽  
K. Venkateswara Rao

Nanobiotechnology emerged as integration of nanotechnology and biotechnology for developing bioactive, biosynthetic and eco -friendly technology for synthesis of nanomaterials. Nanostructures have great demand in areas such as chemistry, catalysis, electronics, energy, and medical applications. Metallic nano-particles are normally synthesized by wet chemical synthesis techniques using the toxic and inflammable chemicals. Present research work on preparation of silver nano-particles by green nano synthesis method and has advantages over conventional methods involving chemical agents which can cause environmental toxicity. The synthesis technique is a cost effective and environment friendly technique for green nano synthesis of silver nano-particles from varying concentrations of AgNO3 solution and extract of Carica papaya fruit of different concentrations which acts as reducing and capping agent. Characterizations has been done using UV–Vis absorption spectroscopy, XRD, particle size analyser and SEM with EDX. Antimicrobial activity was done using Escherichia coli and Pseudomonas.


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