C o F old : an RNA secondary structure prediction method that takes co-transcriptional folding into account

Jeff R. Proctor; Irmtraud M. Meyer

doi:10.1093/nar/gkt174

C o F old : an RNA secondary structure prediction method that takes co-transcriptional folding into account

Nucleic Acids Research ◽

10.1093/nar/gkt174 ◽

2013 ◽

Vol 41 (9) ◽

pp. e102-e102 ◽

Cited By ~ 42

Author(s):

Jeff R. Proctor ◽

Irmtraud M. Meyer

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Rna Secondary Structure Prediction ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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Faculty Opinions recommendation of COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718010599.793476797 ◽

2013 ◽

Author(s):

Scott Silverman

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Rna Secondary Structure Prediction ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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An RNA secondary structure prediction method based on minimum and suboptimal free energy structures

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2015.05.007 ◽

2015 ◽

Vol 380 ◽

pp. 473-479

Author(s):

Haoyue Fu ◽

Lianping Yang ◽

Xiangde Zhang

Keyword(s):

Free Energy ◽

Secondary Structure ◽

Structure Prediction ◽

Rna Secondary Structure ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Rna Secondary Structure Prediction ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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Template-based C8-SCORPION: a protein 8-state secondary structure prediction method using structural information and context-based features

BMC Bioinformatics ◽

10.1186/1471-2105-15-s8-s3 ◽

2014 ◽

Vol 15 (S8) ◽

Cited By ~ 12

Author(s):

Ashraf Yaseen ◽

Yaohang Li

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Structural Information ◽

Prediction Method ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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Improvements in a secondary structure prediction method based on a search for local sequence homologies and its use as a model building tool

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology ◽

10.1016/0167-4838(88)90206-3 ◽

1988 ◽

Vol 955 (3) ◽

pp. 283-295 ◽

Cited By ~ 86

Author(s):

Jonathan M. Levin ◽

Jean Garnier

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Model Building ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Sequence Homologies ◽

Local Sequence ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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A simple and fast secondary structure prediction method using hidden neural networks

Bioinformatics ◽

10.1093/bioinformatics/bth487 ◽

2004 ◽

Vol 21 (2) ◽

pp. 152-159 ◽

Cited By ~ 201

Author(s):

K. Lin ◽

V. A. Simossis ◽

W. R. Taylor ◽

J. Heringa

Keyword(s):

Neural Networks ◽

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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The Chou-Fasman secondary structure prediction method with an extended data base

FEBS Letters ◽

10.1016/0014-5793(78)80795-9 ◽

1978 ◽

Vol 93 (1) ◽

pp. 19-24 ◽

Cited By ~ 44

Author(s):

Patrick Argos ◽

Michael Hanei ◽

R.Michael Garavito

Keyword(s):

Secondary Structure ◽

Data Base ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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GOR Secondary-Structure Prediction Method (Garnier-Osguthorpe-Robson Method)

Dictionary of Bioinformatics and Computational Biology ◽

10.1002/0471650129.dob0302 ◽

2004 ◽

Author(s):

Patrick Aloy

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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GOR Secondary Structure Prediction Method (Garnier-Osguthorpe-Robson Method)

Dictionary of Bioinformatics and Computational Biology ◽

10.1002/9780471650126.dob0302.pub2 ◽

2004 ◽

Author(s):

Patrick Aloy

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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In silico Secondary Structure Prediction Method (Kalasalingam University Structure Prediction Method) using Comparative Analysis

Trends in Bioinformatics ◽

10.3923/tb.2010.11.19 ◽

2010 ◽

Vol 3 (1) ◽

pp. 11-19 ◽

Cited By ~ 3

Author(s):

A. Mugilan ◽

Ajitha . ◽

M. Cathrin ◽

M. Kumar ◽

Devi . ◽

...

Keyword(s):

Comparative Analysis ◽

Secondary Structure ◽

In Silico ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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Theoretical estimation of the calcium-binding constants for proteins from the troponin C superfamily based on a secondary structure prediction method

Journal of Theoretical Biology ◽

10.1016/s0022-5193(88)80174-7 ◽

1988 ◽

Vol 135 (1) ◽

pp. 63-73 ◽

Cited By ~ 5

Author(s):

Grzegorz Boguta ◽

Dariusz Stepkowski ◽

Andrzej Bierzyński

Keyword(s):

Secondary Structure ◽

Calcium Binding ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Prediction Method ◽

Binding Constants ◽

Troponin C ◽

Theoretical Estimation ◽

Structure Prediction Method ◽

Secondary Structure Prediction Method

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