scholarly journals SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

2010 ◽  
Vol 38 (Web Server) ◽  
pp. W534-W539 ◽  
Author(s):  
N. E. Davey ◽  
N. J. Haslam ◽  
D. C. Shields ◽  
R. J. Edwards
Keyword(s):  
Web Server ◽  
Protein Motifs ◽  
Short Protein

scholarly journals miRNAmotif—A Tool for the Prediction of Pre-miRNA–Protein Interactions

2018 ◽  
Vol 19 (12) ◽  
pp. 4075 ◽  
Author(s):  
Martyna Urbanek-Trzeciak ◽  
Edyta Jaworska ◽  
Wlodzimierz Krzyzosiak
Keyword(s):  
Mammalian Cells ◽  
Rna Binding ◽  
Rna Binding Proteins ◽  
Web Server ◽  
Mature Mirnas ◽  
Mirna Biogenesis ◽  
Dependent Manner ◽  
Sequence Motifs ◽  
Protein Motifs ◽  
The Web

MicroRNAs (miRNAs) are short, non-coding post-transcriptional gene regulators. In mammalian cells, mature miRNAs are produced from primary precursors (pri-miRNAs) using canonical protein machinery, which includes Drosha/DGCR8 and Dicer, or the non-canonical mirtron pathway. In plant cells, mature miRNAs are excised from pri-miRNAs by the DICER-LIKE1 (DCL1) protein complex. The involvement of multiple regulatory proteins that bind directly to distinct miRNA precursors in a sequence- or structure-dependent manner adds to the complexity of the miRNA maturation process. Here, we present a web server that enables searches for miRNA precursors that can be recognized by diverse RNA-binding proteins based on known sequence motifs to facilitate the identification of other proteins involved in miRNA biogenesis. The database used by the web server contains known human, murine, and Arabidopsis thaliana pre-miRNAs. The web server can also be used to predict new RNA-binding protein motifs based on a list of user-provided sequences. We show examples of miRNAmotif applications, presenting precursors that contain motifs recognized by Lin28, MCPIP1, and DGCR8 and predicting motifs within pre-miRNA precursors that are recognized by two DEAD-box helicases—DDX1 and DDX17. miRNAmotif is released as an open-source software under the MIT License. The code is available at GitHub (www.github.com/martynaut/mirnamotif). The webserver is freely available at http://mirnamotif.ibch.poznan.pl.

Jurnal uji web serber

2020 ◽  
Author(s):  
Wawan saputra
Keyword(s):  
Web Server ◽  
Word Wide Web

Web server adalah tulang belakang dari word wide web(www)

APLIKASI PENCARI INFORMASI PERMINTAAN LAYANAN WEB YANG ERROR MENGGUNAKAN ALGORITMA BOYER-MOORE

2016 ◽  
Vol 1 (1) ◽  
pp. 001
Author(s):  
Harry Setya Hadi
Keyword(s):  
Data Storage ◽  
Computer Network ◽  
Web Server ◽  
Access Methods ◽  
Ip Address ◽  
String Searching ◽  
Common Process ◽  
Web Server Logs ◽  
Different Parts ◽  
The Web

String searching is a common process in the processes that made the computer because the text is the main form of data storage. Boyer-Moore is the search string from right to left is considered the most efficient methods in practice, and matching string from the specified direction specifically an algorithm that has the best results theoretically. A system that is connected to a computer network that literally pick a web server that is accessed by multiple users in different parts of both good and bad aim. Any activity performed by the user, will be stored in Web server logs. With a log report contained in the web server can help a web server administrator to search the web request error. Web server log is a record of the activities of a web site that contains the data associated with the IP address, time of access, the page is opened, activities, and access methods. The amount of data contained in the resulting log is a log shed useful information.

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