scholarly journals A generalized conformational energy function of DNA derived from molecular dynamics simulations

2009 ◽  
Vol 37 (20) ◽  
pp. e135-e135 ◽  
Author(s):  
S. Yamasaki ◽  
T. Terada ◽  
K. Shimizu ◽  
H. Kono ◽  
A. Sarai
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Energy Function ◽  
Conformational Energy ◽  
Dynamics Simulations

ON THE STRUCTURAL AND ENERGETIC FEATURES OF SMALL METAL CLUSTERS: Nin, Cun, Pdn, Ptn, AND Pbn; n=3–13

2004 ◽  
Vol 15 (06) ◽  
pp. 917-930 ◽  
Author(s):  
ZUHEIR EL-BAYYARI ◽  
HÜSEYIN OYMAK ◽  
HATICE KÖKTEN
Keyword(s):  
Molecular Dynamics ◽  
Potential Energy ◽  
Molecular Dynamics Simulations ◽  
Energy Function ◽  
Metal Clusters ◽  
Minimum Energy ◽  
Potential Energy Function ◽  
Empirical Potential ◽  
Dynamics Simulations

Using an empirical potential energy function parametrized for each of the Ni , Cu , Pd , Pt , and Pb systems, minimum-energy structures of Ni n, Cu n, Pd n, Pt n, and Pb n (n=3–13) microclusters have been determined by performing molecular-dynamics simulations. The structural and energetic features of the obtained microclusters have been investigated.

scholarly journals 2P119 Indirect readout in protein-DNA recognition : evaluation of conformational energy of DNA from molecular dynamics simulations

2004 ◽  
Vol 44 (supplement) ◽  
pp. S139
Author(s):  
Marcos J. Arauzo-Bravo ◽  
Shandar Ahmad ◽  
S. Fujii ◽  
S. Takenaka ◽  
H. Kono ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Dna Recognition ◽  
Conformational Energy ◽  
Dynamics Simulations ◽  
Indirect Readout
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