scholarly journals An intrastrand three-DNA-base interaction is a key specificity determinant of F transfer initiation and of F TraI relaxase DNA recognition and cleavage

2008 ◽  
Vol 36 (14) ◽  
pp. 4565-4572 ◽  
Author(s):  
Katherine Hekman ◽  
Kip Guja ◽  
Chris Larkin ◽  
Joel F. Schildbach
Author(s):  
Nguyen Huu Tho ◽  
Nguyen Thanh Trung

Geometries associated energy gap and electronic properties of adenine, DNA base interaction on the ZnO model cluster have been investigated by using density functional theory with the B3LYP exchange-correlation potential and effective core potential (ECP) LanL2DZ basis sets. The most stable interaction characteristics were analysed with respect to the binding energy, frontier orbital, elemental positions. Natural population analysis charge is also examined to understand the associated charge transfer in structures of cluster and complex. In the Zn-N bonding, combination coefficient from atom orbitals of nitrogen is much higher than that of zinc. The corresponding weight for this coefficient is 94.80%. The results of this study can serve as an orientation for the design of composite material in biomedical nanotechnology.


2000 ◽  
Vol 40 (supplement) ◽  
pp. S92
Author(s):  
M. Aida ◽  
H. Kono ◽  
M.Michael Gromiha ◽  
K. Sayano ◽  
Fabio Pichierri ◽  
...  

Separations ◽  
2021 ◽  
Vol 8 (9) ◽  
pp. 161
Author(s):  
Kogila Oke ◽  
Amos Mugweru

Artemisinin (ART) is a sesquiterpene lactone and a popular malaria drug with potential anticancer properties. In this work, LC/TOF/MS, was used to investigate the reaction of ART with DNA bases. ART-deoxyadenosine and ART-deoxycytidine interactions, were studied in the presence of iron II ions. ART-deoxyadenosine and ART-deoxycytidine reaction mixtures gave chromatographic signatures that remained fairly unchanged at room temperature but grew after incubation at 37 °C. The change in temperature from room temperature to 37 °C was the main driver of adduct formation in these reactions. ART was found to react with Fe(II) ions as observed from several new chromatographic peaks. ART-deoxyadenosine as well as ART-deoxycytidine in the presence of Fe(II) ions resulted in formation of new chromatographic signatures of adducts consisting of DNA bases and ART. It was clear that addition of iron (II) to DNA base-ART mixtures gave rise to new reaction products mediated by a different reaction mechanism. Studies of ART reactions with DNA in vitro is key in elucidating elusive mechanism of this drug.


2010 ◽  
Vol 27 (4) ◽  
pp. 429-442 ◽  
Author(s):  
Sudipta Samanta ◽  
Jaydeb Chakrabarti ◽  
Dhananjay Bhattacharyya

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