Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein–protein interaction dataset

Jie Guo; Xiaomei Wu; Da-Yong Zhang; Kui Lin

doi:10.1093/nar/gkn016

Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein–protein interaction dataset

Nucleic Acids Research ◽

10.1093/nar/gkn016 ◽

2008 ◽

Vol 36 (6) ◽

pp. 2002-2011 ◽

Cited By ~ 14

Author(s):

Jie Guo ◽

Xiaomei Wu ◽

Da-Yong Zhang ◽

Kui Lin

Keyword(s):

Protein Interaction ◽

Interaction Dataset ◽

High Quality ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Genome Wide ◽

Protein Interaction Dataset ◽

Protein Interaction Sites

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Prediction of E.coli Protein-Protein Interaction Sites Using Inter-Residue Distances and High-Quality-Index Features

Advances in Intelligent and Soft Computing - Proceedings of the International Conference on Information Systems Design and Intelligent Applications 2012 (INDIA 2012) held in Visakhapatnam, India, January 2012 ◽

10.1007/978-3-642-27443-5_96 ◽

2012 ◽

pp. 837-844 ◽

Cited By ~ 1

Author(s):

Brijesh Kumar Sriwastava ◽

Subhadip Basu ◽

Ujjwal Maulik ◽

Dariusz Plewczynski

Keyword(s):

Protein Interaction ◽

Quality Index ◽

High Quality ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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Structure-based prediction of protein-protein interaction sites

10.31274/etd-180810-1200 ◽

2012 ◽

Author(s):

Rafael Armando Jordan

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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PPIs Meta: A Meta-predictor of Protein-Protein Interaction Sites with Weighted Voting Strategy

Current Proteomics ◽

10.2174/1570164614666170306164127 ◽

2017 ◽

Vol 14 (3) ◽

Author(s):

Xiaowei Zhao ◽

Lingling Bao ◽

Xiaosa Zhao ◽

Minghao Yin

Keyword(s):

Protein Interaction ◽

Weighted Voting ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Voting Strategy ◽

Protein Interaction Sites

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2P-243 The prediction of protein-protein interaction sites in sequences using a naive bayes classifier with a kernel density estimation(Bioinformatics:Functional genomics,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s145_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S145

Author(s):

Yoichi Murakami ◽

Kenji Mizuguchi

Keyword(s):

Annual Meeting ◽

Density Estimation ◽

Protein Interaction ◽

Kernel Density Estimation ◽

Kernel Density ◽

Bayes Classifier ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Biophysical Society ◽

Protein Interaction Sites

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STUDIES OF THE MOLECULAR LOCALIZATION OF PROTEIN-PROTEIN INTERACTION SITES IN THE LACTOSE SYNTHASE SYSTEM

Proteins in Biology and Medicine ◽

10.1016/b978-0-12-124580-1.50027-6 ◽

1982 ◽

pp. 379-393

Author(s):

Keith Brew ◽

Sudhir K. Sinha

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Lactose Synthase ◽

Protein Interaction Sites

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Sequence-based prediction of protein-protein interaction sites by simplified long short-term memory network

Neurocomputing ◽

10.1016/j.neucom.2019.05.013 ◽

2019 ◽

Vol 357 ◽

pp. 86-100 ◽

Cited By ~ 12

Author(s):

Buzhong Zhang ◽

Jinyan Li ◽

Lijun Quan ◽

Yu Chen ◽

Qiang Lü

Keyword(s):

Protein Interaction ◽

Short Term Memory ◽

Short Term ◽

Term Memory ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Memory Network ◽

Long Short Term Memory ◽

Protein Interaction Sites

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A Cascade Random Forests Algorithm for Predicting Protein-Protein Interaction Sites

IEEE Transactions on NanoBioscience ◽

10.1109/tnb.2015.2475359 ◽

2015 ◽

Vol 14 (7) ◽

pp. 746-760 ◽

Cited By ~ 22

Author(s):

Zhi-Sen Wei ◽

Jing-Yu Yang ◽

Hong-Bin Shen ◽

Dong-Jun Yu

Keyword(s):

Random Forests ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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Prediction of Protein-Protein Interaction Sites Combing Sequence Profile and Hydrophobic Information

Intelligent Computing Theories and Application - Lecture Notes in Computer Science ◽

10.1007/978-3-319-95930-6_70 ◽

2018 ◽

pp. 697-702

Author(s):

Lili Peng ◽

Fang Chen ◽

Nian Zhou ◽

Peng Chen ◽

Jun Zhang ◽

...

Keyword(s):

Protein Interaction ◽

Sequence Profile ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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Protein-protein interaction sites in the calcium modulated skeletal muscle troponin complex

Journal of Inorganic Biochemistry ◽

10.1016/s0162-0134(00)80204-4 ◽

1980 ◽

Vol 12 (3) ◽

pp. 227-239 ◽

Cited By ~ 14

Author(s):

J.S. Evans ◽

B.A. Levine

Keyword(s):

Skeletal Muscle ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Troponin Complex ◽

Protein Interaction Sites

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A common structural feature enclosing protein-protein interaction sites: prediction of interaction sites and development of potent bioactive peptides

Toxicon ◽

10.1016/0041-0101(95)98360-8 ◽

1995 ◽

Vol 33 (11) ◽

pp. 1400-1401 ◽

Cited By ~ 1

Author(s):

R.Manjunatha Kini ◽

H.J. Evans

Keyword(s):

Structural Feature ◽

Protein Interaction ◽

Bioactive Peptides ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites ◽

Common Structural Feature

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