The MAPPER database: a multi-genome catalog of putative transcription factor binding sites

V. D. Marinescu

doi:10.1093/nar/gki103

The MAPPER database: a multi-genome catalog of putative transcription factor binding sites

Nucleic Acids Research ◽

10.1093/nar/gki103 ◽

2004 ◽

Vol 33 (Database issue) ◽

pp. D91-D97 ◽

Cited By ~ 81

Author(s):

V. D. Marinescu

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Putative Transcription Factor

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DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites

BMC Bioinformatics ◽

10.1186/1471-2105-9-535 ◽

2008 ◽

Vol 9 (1) ◽

pp. 535 ◽

Cited By ~ 3

Author(s):

Evert-Jan Blom ◽

Sacha AFT van Hijum ◽

Klaas J Hofstede ◽

Remko Silvis ◽

Jos BTM Roerdink ◽

...

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Transcriptome Data ◽

Functional Annotations ◽

Factor Binding ◽

Putative Transcription Factor

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A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites

Lecture Notes in Computer Science - Algorithms in Bioinformatics ◽

10.1007/3-540-44696-6_22 ◽

2001 ◽

pp. 278-293 ◽

Cited By ~ 20

Author(s):

Yoseph Barash ◽

Gill Bejerano ◽

Nir Friedman

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Geometric Approach ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Putative Transcription Factor

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SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes

BMC Genomics ◽

10.1186/s12864-019-6051-0 ◽

2019 ◽

Vol 20 (1) ◽

Cited By ~ 6

Author(s):

Teshome Dagne Mulugeta ◽

Torfinn Nome ◽

Thu-Hien To ◽

Manu Kumar Gundappa ◽

Daniel J. Macqueen ◽

...

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Putative Transcription Factor

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The sequence of 5′ flanking DNA from the rat preprotachykinin gene; analysis of putative transcription factor binding sites

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression ◽

10.1016/0167-4781(93)90233-4 ◽

1993 ◽

Vol 1172 (3) ◽

pp. 361-363 ◽

Cited By ~ 6

Author(s):

K. Chapman ◽

V. Lyons ◽

A.J. Harmar

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Gene Analysis ◽

Factor Binding ◽

Putative Transcription Factor ◽

Preprotachykinin Gene

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Genomic regions harboring insecticide resistance-associated Cyp genes are enriched by transposable element fragments carrying putative transcription factor binding sites in two sibling Drosophila species

Gene ◽

10.1016/j.gene.2013.11.080 ◽

2014 ◽

Vol 537 (1) ◽

pp. 93-99 ◽

Cited By ~ 11

Author(s):

Claudia M.A. Carareto ◽

Eric H. Hernandez ◽

Cristina Vieira

Keyword(s):

Transcription Factor ◽

Insecticide Resistance ◽

Transposable Element ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Drosophila Species ◽

Factor Binding ◽

Putative Transcription Factor ◽

Genomic Regions

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Sequence-Based Prediction of Putative Transcription Factor Binding Sites in DNA Sequences of Any Length

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2017.2773075 ◽

2018 ◽

Vol 15 (5) ◽

pp. 1461-1469

Author(s):

Wook Lee ◽

Byungkyu Park ◽

Kyungsook Han

Keyword(s):

Transcription Factor ◽

Dna Sequences ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Putative Transcription Factor

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Identification of putative transcription factor binding sites in rodent selenoprotein W promoter

Journal of Inorganic Biochemistry ◽

10.1016/j.jinorgbio.2004.06.003 ◽

2004 ◽

Vol 98 (9) ◽

pp. 1513-1520 ◽

Cited By ~ 8

Author(s):

A. Amantana ◽

W.R. Vorachek ◽

J.A. Butler ◽

W. Ream ◽

P.D. Whanger

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Selenoprotein W ◽

Factor Binding ◽

Putative Transcription Factor

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EZ-Retrieve: a web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites

Nucleic Acids Research ◽

10.1093/nar/gnf120 ◽

2002 ◽

Vol 30 (21) ◽

pp. 121e-121 ◽

Cited By ~ 16

Author(s):

H. Zhang

Keyword(s):

Transcription Factor ◽

Dna Sequences ◽

Binding Sites ◽

Web Server ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Human Dna ◽

Putative Transcription Factor

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The MAPPER2 Database: a multi-genome catalog of putative transcription factor binding sites

Nucleic Acids Research ◽

10.1093/nar/gkr1080 ◽

2011 ◽

Vol 40 (D1) ◽

pp. D155-D161 ◽

Cited By ~ 15

Author(s):

A. Riva

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Putative Transcription Factor

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The sequence of 5′ flanking DNA from the mouse 11 β-hydroxysteroid dehydrogenase type 1 gene and analysis of putative transcription factor binding sites

Gene ◽

10.1016/s0378-1119(96)00490-8 ◽

1996 ◽

Vol 181 (1-2) ◽

pp. 233-235 ◽

Cited By ~ 7

Author(s):

M.W. Voice ◽

J.R. Seckl ◽

K.E. Chapman

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Hydroxysteroid Dehydrogenase ◽

Transcription Factor Binding ◽

Factor Binding ◽

Putative Transcription Factor

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