scholarly journals GOblet: a platform for Gene Ontology annotation of anonymous sequence data

2004 ◽  
Vol 32 (Web Server) ◽  
pp. W313-W317 ◽  
Author(s):  
D. Groth ◽  
H. Lehrach ◽  
S. Hennig
Keyword(s):  
Gene Ontology ◽  
Sequence Data ◽  
Gene Ontology Annotation

scholarly journals GOblet: Annotation of anonymous sequence data with Gene Ontology and Pathway terms

2008 ◽  
Vol 5 (2) ◽  
Author(s):  
Detlef Groth ◽  
Stefanie Hartmann ◽  
Georgia Panopoulou ◽  
Albert J. Poustka ◽  
Steffen Hennig
Keyword(s):  
Gene Ontology ◽  
Web Service ◽  
Sequence Data ◽  
Clustering Algorithms ◽  
Analysis Pipeline ◽  
Term Enrichment ◽  
Confidential Data ◽  
The Individual ◽  
Go Terms ◽  
Data Analysis Pipeline

SummaryThe functional annotation of genomic data has become a major task for the ever-growing number of sequencing projects. In order to address this challenge, we recently developed GOblet, a free web service for the annotation of anonymous sequences with Gene Ontology (GO) terms. However, to overcome limitations of the GO terminology, and to aid in understanding not only single components but as well systemic interactions between the individual components, we have now extended the GOblet web service to integrate also pathway annotations. Furthermore, we extended and upgraded the data analysis pipeline with improved summaries, and added term enrichment and clustering algorithms. Finally, we are now making GOblet available as a stand-alone application for high-throughput processing on local machines. The advantages of this frequently requested feature is that a) the user can avoid restrictions of our web service for uploading and processing large amounts of data, and that b) confidential data can be analysed without insecure transfer to a public web server. The stand-alone version of the web service has been implemented using platform independent Tcl-scripts, which can be run with just a single runtime file utilizing the Starkit technology. The GOblet web service and the stand-alone application are freely available at http://goblet.molgen.mpg.de.

scholarly journals Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae

2009 ◽  
Vol 9 (Suppl 1) ◽  
pp. S8 ◽  
Author(s):  
Shaowu Meng ◽  
Douglas E Brown ◽  
Daniel J Ebbole ◽  
Trudy Torto-Alalibo ◽  
Yeon Oh ◽  
...  
Keyword(s):  
Gene Ontology ◽  
Magnaporthe Oryzae ◽  
Rice Blast ◽  
Rice Blast Fungus ◽  
Gene Ontology Annotation ◽  
Blast Fungus

scholarly journals The GOA database in 2009--an integrated Gene Ontology Annotation resource

2009 ◽  
Vol 37 (Database) ◽  
pp. D396-D403 ◽  
Author(s):  
D. Barrell ◽  
E. Dimmer ◽  
R. P. Huntley ◽  
D. Binns ◽  
C. O'Donovan ◽  
...  
Keyword(s):  
Gene Ontology ◽  
Gene Ontology Annotation

scholarly journals Use of Gene Ontology Annotation to understand the peroxisome proteome in humans

Database ◽  
2013 ◽  
Vol 2013 ◽  
Author(s):  
Prudence Mutowo-Meullenet ◽  
Rachael P. Huntley ◽  
Emily C. Dimmer ◽  
Yasmin Alam-Faruque ◽  
Tony Sawford ◽  
...  
Keyword(s):  
Gene Ontology ◽  
Gene Ontology Annotation
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