scholarly journals A Comprehensive Analysis of Transcript-Supported De Novo Genes in Saccharomyces sensu stricto Yeasts

2017 ◽  
Vol 34 (11) ◽  
pp. 2823-2838 ◽  
Author(s):  
Tzu-Chiao Lu ◽  
Jun-Yi Leu ◽  
Wen-Chang Lin
Keyword(s):  
De Novo ◽  
Sensu Stricto ◽  
Comprehensive Analysis ◽  
Saccharomyces Sensu Stricto ◽  
De Novo Genes

scholarly journals Identification of Saccharomyces sensu stricto and Torulaspora yeasts by PCR ribotyping

1997 ◽  
Vol 24 (4) ◽  
pp. 311-315 ◽  
Author(s):  
S. Smole Možina ◽  
D. Dlauchy ◽  
T. Deak ◽  
P. Raspor
Keyword(s):  
Sensu Stricto ◽  
Saccharomyces Sensu Stricto ◽  
Pcr Ribotyping

scholarly journals Comparative Transcriptomics Reveals Clues for Differences in Pathogenicity between Hysterothylacium aduncum, Anisakis simplex sensu stricto and Anisakis pegreffii

Genes ◽  
2020 ◽  
Vol 11 (3) ◽  
pp. 321 ◽  
Author(s):  
Serena Cavallero ◽  
Fabrizio Lombardo ◽  
Marco Salvemini ◽  
Antonella Pizzarelli ◽  
Cinzia Cantacessi ◽  
...  
Keyword(s):  
Ribosomal Proteins ◽  
De Novo ◽  
Proteolytic Enzymes ◽  
Sensu Stricto ◽  
Anisakis Simplex ◽  
Anisakis Pegreffii ◽  
Primary Hemostasis ◽  
Differential Gene ◽  
Immunomodulatory Peptides ◽  
Hysterothylacium Aduncum

Ascaridoid nematodes are widespread in marine fishes. Despite their major socioeconomic importance, mechanisms associated to the fish-borne zoonotic disease anisakiasis are still obscure. RNA-Seq and de-novo assembly were herein applied to RNA extracted from larvae and dissected pharynx of Hysterothylacium aduncum (HA), a non-pathogenic nematode. Assembled transcripts in HA were annotated and compared to the transcriptomes of the zoonotic species Anisakis simplex sensu stricto (AS) and Anisakis pegreffii (AP). Approximately 60,000,000 single-end reads were generated for HA, AS and AP. Transcripts in HA encoded for 30,254 putative peptides while AS and AP encoded for 20,574 and 20,840 putative peptides, respectively. Differential gene expression analyses yielded 471, 612 and 526 transcripts up regulated in the pharynx of HA, AS and AP. The transcriptomes of larvae and pharynx of HA were enriched in transcripts encoding collagen, peptidases, ribosomal proteins and in heat-shock motifs. Transcripts encoding proteolytic enzymes, anesthetics, inhibitors of primary hemostasis and virulence factors, anticoagulants and immunomodulatory peptides were up-regulated in AS and AP pharynx. This study represents the first transcriptomic characterization of a marine parasitic nematode commonly recovered in fish and probably of negligible concern for public health.

scholarly journals A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila

2020 ◽  
Vol 88 (4) ◽  
pp. 382-398 ◽  
Author(s):  
Brennen Heames ◽  
Jonathan Schmitz ◽  
Erich Bornberg-Bauer
Keyword(s):  
De Novo ◽  
Protein Coding ◽  
De Novo Genes

Origination and evolution of orphan genes and de novo genes in the genome of Caenorhabditis elegans

2019 ◽  
Vol 62 (4) ◽  
pp. 579-593 ◽  
Author(s):  
Wenyu Zhang ◽  
Yuanxiao Gao ◽  
Manyuan Long ◽  
Bairong Shen
Keyword(s):  
Caenorhabditis Elegans ◽  
De Novo ◽  
Orphan Genes ◽  
De Novo Genes
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