scholarly journals Baryon acoustic oscillations reconstruction using convolutional neural networks

2020 ◽  
Vol 501 (1) ◽  
pp. 1499-1510
Author(s):  
Tian-Xiang Mao ◽  
Jie Wang ◽  
Baojiu Li ◽  
Yan-Chuan Cai ◽  
Bridget Falck ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Large Scale ◽  
Initial Conditions ◽  
Signal To Noise Ratio ◽  
Fine Tuning ◽  
Reconstruction Method ◽  
Acoustic Oscillations ◽  
Deep Convolutional Neural Networks ◽  
Baryon Acoustic Oscillations

ABSTRACT We propose a new scheme to reconstruct the baryon acoustic oscillations (BAO) signal, which contains key cosmological information, based on deep convolutional neural networks (CNN). Trained with almost no fine tuning, the network can recover large-scale modes accurately in the test set: the correlation coefficient between the true and reconstructed initial conditions reaches $90{{\ \rm per\ cent}}$ at $k\le 0.2 \, h\mathrm{Mpc}^{-1}$, which can lead to significant improvements of the BAO signal-to-noise ratio down to $k\simeq 0.4\, h\mathrm{Mpc}^{-1}$. Since this new scheme is based on the configuration-space density field in sub-boxes, it is local and less affected by survey boundaries than the standard reconstruction method, as our tests confirm. We find that the network trained in one cosmology is able to reconstruct BAO peaks in the others, i.e. recovering information lost to non-linearity independent of cosmology. The accuracy of recovered BAO peak positions is far less than that caused by the difference in the cosmology models for training and testing, suggesting that different models can be distinguished efficiently in our scheme. It is very promising that our scheme provides a different new way to extract the cosmological information from the ongoing and future large galaxy surveys.

scholarly journals MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

BMC Genomics ◽  
2019 ◽  
Vol 20 (S9) ◽  
Author(s):  
Yang-Ming Lin ◽  
Ching-Tai Chen ◽  
Jia-Ming Chang
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Networks ◽  
Large Scale ◽  
Learning Algorithm ◽  
Pearson Correlation ◽  
Tandem Mass ◽  
Spectral Library ◽  
Deep Convolutional Neural Networks ◽  
Library Search

Abstract Background Tandem mass spectrometry allows biologists to identify and quantify protein samples in the form of digested peptide sequences. When performing peptide identification, spectral library search is more sensitive than traditional database search but is limited to peptides that have been previously identified. An accurate tandem mass spectrum prediction tool is thus crucial in expanding the peptide space and increasing the coverage of spectral library search. Results We propose MS2CNN, a non-linear regression model based on deep convolutional neural networks, a deep learning algorithm. The features for our model are amino acid composition, predicted secondary structure, and physical-chemical features such as isoelectric point, aromaticity, helicity, hydrophobicity, and basicity. MS2CNN was trained with five-fold cross validation on a three-way data split on the large-scale human HCD MS2 dataset of Orbitrap LC-MS/MS downloaded from the National Institute of Standards and Technology. It was then evaluated on a publicly available independent test dataset of human HeLa cell lysate from LC-MS experiments. On average, our model shows better cosine similarity and Pearson correlation coefficient (0.690 and 0.632) than MS2PIP (0.647 and 0.601) and is comparable with pDeep (0.692 and 0.642). Notably, for the more complex MS2 spectra of 3+ peptides, MS2PIP is significantly better than both MS2PIP and pDeep. Conclusions We showed that MS2CNN outperforms MS2PIP for 2+ and 3+ peptides and pDeep for 3+ peptides. This implies that MS2CNN, the proposed convolutional neural network model, generates highly accurate MS2 spectra for LC-MS/MS experiments using Orbitrap machines, which can be of great help in protein and peptide identifications. The results suggest that incorporating more data for deep learning model may improve performance.

scholarly journals Spatio–Temporal Image Representation of 3D Skeletal Movements for View-Invariant Action Recognition with Deep Convolutional Neural Networks

Sensors ◽  
2019 ◽  
Vol 19 (8) ◽  
pp. 1932 ◽  
Author(s):  
Huy Hieu Pham ◽  
Houssam Salmane ◽  
Louahdi Khoudour ◽  
Alain Crouzil ◽  
Pablo Zegers ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Action Recognition ◽  
Large Scale ◽  
Image Representation ◽  
Human Action ◽  
Computational Time ◽  
Deep Convolutional Neural Networks ◽  
Classification Tasks ◽  
Spatio Temporal

Designing motion representations for 3D human action recognition from skeleton sequences is an important yet challenging task. An effective representation should be robust to noise, invariant to viewpoint changes and result in a good performance with low-computational demand. Two main challenges in this task include how to efficiently represent spatio–temporal patterns of skeletal movements and how to learn their discriminative features for classification tasks. This paper presents a novel skeleton-based representation and a deep learning framework for 3D action recognition using RGB-D sensors. We propose to build an action map called SPMF (Skeleton Posture-Motion Feature), which is a compact image representation built from skeleton poses and their motions. An Adaptive Histogram Equalization (AHE) algorithm is then applied on the SPMF to enhance their local patterns and form an enhanced action map, namely Enhanced-SPMF. For learning and classification tasks, we exploit Deep Convolutional Neural Networks based on the DenseNet architecture to learn directly an end-to-end mapping between input skeleton sequences and their action labels via the Enhanced-SPMFs. The proposed method is evaluated on four challenging benchmark datasets, including both individual actions, interactions, multiview and large-scale datasets. The experimental results demonstrate that the proposed method outperforms previous state-of-the-art approaches on all benchmark tasks, whilst requiring low computational time for training and inference.

scholarly journals Facial Expressions Recognition for Human–Robot Interaction Using Deep Convolutional Neural Networks with Rectified Adam Optimizer

Sensors ◽  
2020 ◽  
Vol 20 (8) ◽  
pp. 2393 ◽  
Author(s):  
Daniel Octavian Melinte ◽  
Luige Vladareanu
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Convolutional Neural Network ◽  
Emotion Recognition ◽  
Convolutional Neural Networks ◽  
Human Robot Interaction ◽  
Fine Tuning ◽  
Visual Object ◽  
Single Shot ◽  
Deep Convolutional Neural Networks

The interaction between humans and an NAO robot using deep convolutional neural networks (CNN) is presented in this paper based on an innovative end-to-end pipeline method that applies two optimized CNNs, one for face recognition (FR) and another one for the facial expression recognition (FER) in order to obtain real-time inference speed for the entire process. Two different models for FR are considered, one known to be very accurate, but has low inference speed (faster region-based convolutional neural network), and one that is not as accurate but has high inference speed (single shot detector convolutional neural network). For emotion recognition transfer learning and fine-tuning of three CNN models (VGG, Inception V3 and ResNet) has been used. The overall results show that single shot detector convolutional neural network (SSD CNN) and faster region-based convolutional neural network (Faster R-CNN) models for face detection share almost the same accuracy: 97.8% for Faster R-CNN on PASCAL visual object classes (PASCAL VOCs) evaluation metrics and 97.42% for SSD Inception. In terms of FER, ResNet obtained the highest training accuracy (90.14%), while the visual geometry group (VGG) network had 87% accuracy and Inception V3 reached 81%. The results show improvements over 10% when using two serialized CNN, instead of using only the FER CNN, while the recent optimization model, called rectified adaptive moment optimization (RAdam), lead to a better generalization and accuracy improvement of 3%-4% on each emotion recognition CNN.

scholarly journals Deep Convolutional Neural Networks Capabilities for Binary Classification of Polar Mesocyclones in Satellite Mosaics

2018 ◽  
Author(s):  
Mikhail Krinitskiy ◽  
Polina Verezemskaya ◽  
Kirill Grashchenkov ◽  
Natalia Tilinina ◽  
Sergey Gulev ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Satellite Imagery ◽  
Binary Classification ◽  
Fine Tuning ◽  
Reference Database ◽  
Accuracy Score ◽  
Deep Convolutional Neural Networks ◽  
Deep Ocean Water

Polar mesocyclones (MCs) are small marine atmospheric vortices. The class of intense MCs, called polar lows, are accompanied by extremely strong surface winds and heat fluxes and thus largely influencing deep ocean water formation in the polar regions. Accurate detection of polar mesocyclones in high-resolution satellite data, while challenging, is a time-consuming task, when performed manually. Existing algorithms for the automatic detection of polar mesocyclones are based on the conventional analysis of patterns of cloudiness and involve different empirically defined thresholds of geophysical variables. As a result, various detection methods typically reveal very different results when applied to a single dataset. We develop a conceptually novel approach for the detection of MCs based on the use of deep convolutional neural networks (DCNNs). As a first step, we demonstrate that DCNN model is capable of performing binary classification of 500x500km patches of satellite images regarding MC patterns presence in it. The training dataset is based on the reference database of MCs manually tracked in the Southern Hemisphere from satellite mosaics. We use a subset of this database with MC diameters falling in the range of 200-400 km. This dataset is further used for testing several different DCNN setups, specifically, DCNN built “from scratch”, DCNN based on VGG16 pre-trained weights also engaging the Transfer Learning technique, and DCNN based on VGG16 with Fine Tuning technique. Each of these networks is further applied to both infrared (IR) and a combination of infrared and water vapor (IR+WV) satellite imagery. The best skills (97% in terms of the binary classification accuracy score) is achieved with the model that averages the estimates of the ensemble of different DCNNs. The algorithm can be further extended to the automatic identification and tracking numerical scheme and applied to other atmospheric phenomena characterized by a distinct signature in satellite imagery.

Small aircraft detection using deep learning

2021 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Emre Kiyak ◽  
Gulay Unal
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Transfer Learning ◽  
Convolutional Neural Networks ◽  
Fine Tuning ◽  
Deep Convolutional Neural Networks ◽  
Content Type ◽  
Training Time

Purpose The paper aims to address the tracking algorithm based on deep learning and four deep learning tracking models developed. They compared with each other to prevent collision and to obtain target tracking in autonomous aircraft. Design/methodology/approach First, to follow the visual target, the detection methods were used and then the tracking methods were examined. Here, four models (deep convolutional neural networks (DCNN), deep convolutional neural networks with fine-tuning (DCNNFN), transfer learning with deep convolutional neural network (TLDCNN) and fine-tuning deep convolutional neural network with transfer learning (FNDCNNTL)) were developed. Findings The training time of DCNN took 9 min 33 s, while the accuracy percentage was calculated as 84%. In DCNNFN, the training time of the network was calculated as 4 min 26 s and the accuracy percentage was 91%. The training of TLDCNN) took 34 min and 49 s and the accuracy percentage was calculated as 95%. With FNDCNNTL, the training time of the network was calculated as 34 min 33 s and the accuracy percentage was nearly 100%. Originality/value Compared to the results in the literature ranging from 89.4% to 95.6%, using FNDCNNTL, better results were found in the paper.

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