scholarly journals Population connectivity of the crab Gandalfus yunohana (Takeda, Hashimoto & Ohta, 2000) (Decapoda: Brachyura: Bythograeidae) from deep-sea hydrothermal vents in the northwestern Pacific

2020 ◽  
Vol 40 (5) ◽  
pp. 556-562
Author(s):  
Hiromi K Watanabe ◽  
Chong Chen ◽  
Shigeaki Kojima ◽  
Shogo Kato ◽  
Hiroyuki Yamamoto
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vents ◽  
Okinawa Trough ◽  
Coi Gene ◽  
Genetic Connectivity ◽  
Reverse Direction ◽  
Northwestern Pacific ◽  
Brachyuran Crab ◽  
The Okinawa Trough ◽  
Mariana Arc

Abstract Genetic connectivity provides a basis for evaluating the resilience of animal communities by elucidating gene flow and serves as a proxy for realized dispersal through planktonic larval dispersal, settlement, and reproductive success. Gandalfus yunohana (Takeda, Hashimoto & Ohta, 2000) is a brachyuran crab endemic to deep-sea hydrothermal vents in the northwestern Pacific. Although an iconic and often dominant species, the connectivity among its populations is yet to be examined. We obtained barcoding sequences of the mitochondrial COI gene of G. yunohana from four vent fields including two on the Izu Arc, one on the northern Mariana Arc, and one in the Okinawa Trough. Genetic diversity of populations on the Izu and northern Mariana arcs were similar and shared the dominant haplotypes, showing no genetic subdivision regardless of the habitat depth. The Okinawa Trough population, for which only one specimen was available, was not genetically different from specimens from the Izu/Mariana arc populations. Estimation of the number of immigrants among populations suggests that the migration from north to south is higher than in the reverse direction. Our results resonate with previous laboratory-culture experiments, suggesting a high dispersal capability for G. yunohana. Visual observations and sampling, however, suggest that G. yunohana is exceedingly rare in the Okinawa Trough. This perhaps results from a lack of sufficient larval supply from the Izu-Bonin-Mariana Arc vents, and there may not be a reproductive population in the Okinawa Trough.

scholarly journals Draft Genome Sequence of Exiguobacterium sp. HVEsp1, a Thermophilic Bacterium Isolated from a Deep-Sea Hydrothermal Vent in the Okinawa Trough

2017 ◽  
Vol 5 (17) ◽  
Author(s):  
Chen Chen ◽  
Li Sun
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Hydrothermal Vents ◽  
Sequence Data ◽  
Okinawa Trough ◽  
Draft Genome ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
The Okinawa Trough

ABSTRACT We report here the draft genome sequence of Exiguobacterium sp. HVEsp1, a thermophilic bacterium isolated from a deep-sea hydrothermal vent. The estimated genome size of this strain is 2,838,499 bp with a G+C content of 48.2%. The genome sequence data provide valuable information that will facilitate studies on the adaptation mechanisms of bacteria living in deep-sea hydrothermal vents.

scholarly journals Occurrence and recent long-distance dispersal of deep-sea hydrothermal vent shrimps

2005 ◽  
Vol 2 (2) ◽  
pp. 257-260 ◽  
Author(s):  
Gaku Tokuda ◽  
Akinori Yamada ◽  
Kazuma Nakano ◽  
Nao Arita ◽  
Hideo Yamasaki
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
Hydrothermal Vents ◽  
Okinawa Trough ◽  
Rrna Gene ◽  
Cold Seeps ◽  
Long Distance Dispersal ◽  
High Concentration ◽  
Long Distance ◽  
The Okinawa Trough

Deep-sea hydrothermal vents and methane seeps are extreme environments that have a high concentration of hydrogen sulphide. However, abundant unique invertebrates including shrimps of the family Bresiliidae have been found in such environments. The bresiliid shrimps are believed to have radiated in the Miocene (less than 20 Myr); however, the period when and the mechanisms by which they dispersed across the hydrothermal vents and cold seeps in oceans worldwide have not been clarified. In the present study, we collected the deep-sea blind shrimp Alvinocaris longirostris from the hydrothermal vent site in the Okinawa Trough and carried out the first investigation of the 18S rRNA gene of a bresiliid shrimp. The phylogenetic analysis revealed that the bresiliid shrimp is situated at an intermediate lineage within the infraorder Caridea and shows monophyly with palaemonid shrimps, which live in shallow sea and freshwater. Furthermore, the mitochondrial cytochrome oxidase I ( COI ) gene sequences were analysed to determine the phylogenetic relationship with known bresiliid shrimps. A. longirostris of the Okinawa Trough had two haplotypes of the COI gene, one of which was identical to the Alvinocaris sp. of the cold seeps in Sagami Bay. These results indicate that a long-distance dispersal of A. longirostris occurred possibly within the last 100 000 years.

EXPRESS: A Piecewise Model for In Situ Raman Measurement of the Chlorinity of Deep-Sea High-Temperature Hydrothermal Fluids

2021 ◽  
pp. 000370282199911
Author(s):  
meng ge ◽  
Lianfu Li ◽  
Xin Zhang ◽  
Zhendong Luan ◽  
Zengfeng Du ◽  
...  
Keyword(s):  
High Temperature ◽  
Deep Sea ◽  
Okinawa Trough ◽  
Peak Position ◽  
Hydrothermal Fluids ◽  
Calibration Model ◽  
The Okinawa Trough ◽  
Temperature Ranges ◽  
Piecewise Model ◽  
C 50

The chlorinity of deep-sea hydrothermal fluids, representing one of the crucial deep-sea hydrothermal indicators, indicates the degree of deep phase separation of hydrothermal fluids and water/rock reactions. However, accurately measuring the chlorinity of high-temperature hydrothermal fluids is still a significant challenge. In this paper, a piecewise chlorinity model to measure the chlorinity of high-temperature hydrothermal fluids was developed based on the OH stretching band of water, exhibiting an accuracy of 96.20%. The peak position, peak area ratio and F value were selected to establish the chlorinity piecewise calibration model within the temperature ranges of 0-50°C, 50-200°C and 200-300°C. Compared with that of the chlorinity calibration model built based on a single parameter, the accuracy of this piecewise model increased by approximately 4.83-12.33%. This chlorinity calibration model was applied to determine the concentrations of Cl for high-temperature hydrothermal fluids in the Okinawa Trough hydrothermal field.

Records of species of the hippolytid genus Lebbeus White, 1847 (Crustacea: Decapoda: Caridea) from hydrothermal vents in the Pacific Ocean, with descriptions of three new species

Zootaxa ◽  
2012 ◽  
Vol 3241 (1) ◽  
pp. 35 ◽  
Author(s):  
TOMOYUKI KOMAI ◽  
SHINJI TSUCHIDA ◽  
MICHEL SEGONZAC
Keyword(s):  
New Species ◽  
Pacific Ocean ◽  
Hydrothermal Vents ◽  
Okinawa Trough ◽  
East Pacific Rise ◽  
East Pacific ◽  
The Okinawa Trough ◽  
The Pacific ◽  
The Pacific Ocean ◽  
Three New Species

Five species of the hippolytid shrimp genus Lebbeus White, 1847 are reported from various deep-water hydrothermal ventsites in the Pacific Ocean: L. laurentae Wicksten, 2010 from the East Pacific Rise 13°N; L. wera Ahyong, 2009 from theBrothers Seamount, Kermadec Ridge, New Zealand; L. pacmanus sp. nov. from the Manus Basin, Bismarck Sea; L.shinkaiae sp. nov. from the Okinawa Trough, Japan; and L. thermophilus sp. nov. from the Manus and Lau basins, south-western Pacific. Lebbeus laurentae is fully redescribed because the original and subsequent descriptions are not totallydetailed. Differentiating characters among the three new species and close allies are discussed. Previous records of Lebbeus species from hydrothermal vents are reviewed.

Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)

2020 ◽  
Author(s):  
Chong Chen ◽  
Ting Xu ◽  
Koen Fraussen ◽  
Jian-Wen Qiu
Keyword(s):  
South China Sea ◽  
South China ◽  
Okinawa Trough ◽  
Morphological Variability ◽  
The South China Sea ◽  
Coi Gene ◽  
The South ◽  
China Sea ◽  
The Okinawa Trough ◽  
New Findings

Abstract Whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae) commonly inhabit deep-water hydrothermal vents and hydrocarbon seeps. Thermosipho desbruyeresi, originally described from the Lau Basin, was thought to occur in vents across the western Pacific, with Eosipho desbruyeresi nipponensis described from the Okinawa Trough treated as its junior synonym. However, new material collected from vents in the Okinawa Trough and seeps in the South China Sea exhibit key characteristics of Enigmaticolus. Re-examination of the types revealed that Eosipho d. nipponensis is actually morphologically distinct from Thermosipho desbruyeresi. A molecular phylogeny reconstructed using the cytochrome c oxidase subunit I (COI) gene confirmed the placement of both taxa in Enigmaticolus and supported their distinctiveness at the species level. We, therefore, rehabilitate E. d. nipponensis as Enigmaticolus nipponensis comb. nov. and transfer T. desbruyeresi to the same genus, as Enigmaticolus desbruyeresi comb. nov. Our results also revealed that Enigmaticolus monnieri described from east Africa and E. inflatus described from the South China Sea are in fact conspecific with E. nipponensis. We discuss the distribution and biogeography, as well as morphological variability, of Enigmaticolus in the light of these new findings. Thermosipho is then left with only its type species, T. auzendei from the East Pacific vents. We have revised the diagnosis for the two genera, as well as the species included in them.

New ways for research and development using a deep-sea hydrothermal vent system in the Okinawa Trough

2015 ◽  
Author(s):  
Tomokazu Saruhashi ◽  
Masanori Kyo ◽  
Ikuo Sawada ◽  
Takahiro Yokoyama ◽  
Noriaki Sakurai ◽  
...  
Keyword(s):  
Research And Development ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Okinawa Trough ◽  
The Okinawa Trough

scholarly journals Host-symbiont population genomics provide insights into partner fidelity, transmission mode and habitat adaptation in deep-sea hydrothermal vent snails

2021 ◽  
Author(s):  
Corinna Breusing ◽  
Maximilian Genetti ◽  
Shelbi Russell ◽  
Russell Corbett-Detig ◽  
Roxanne Beinart
Keyword(s):  
Environmental Factors ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Hydrothermal Vents ◽  
Population Genomics ◽  
Horizontal Transmission ◽  
Ecological Resilience ◽  
Genetic Connectivity ◽  
Genetic Structuring ◽  
Habitat Adaptation

Symbiont specificity, both at the phylotype and strain level, can have profound consequences for host ecology and evolution. However, except for insights from a few model symbiosis systems, the degree of partner fidelity and the influence of host versus environmental factors on symbiont composition are still poorly understood. Nutritional symbioses between invertebrate animals and chemosynthetic bacteria at deep-sea hydrothermal vents are examples of relatively selective associations, where hosts affiliate only with particular phylotypes of gammaproteobacterial or campylobacterial symbionts. In hydrothermal vent snails of the sister genera Alviniconcha and Ifremeria this phylotype specificity has been shown to play a role in habitat distribution and partitioning among different holobiont species. However, it is currently unknown if fidelity goes beyond species level associations that might influence genetic structuring, connectivity and habitat adaptation of holobiont populations. We used metagenomic analyses to assess sequence variation in hosts and symbionts and identify correlations with geographic and environmental factors. Our analyses indicate that host populations are not differentiated across a ~800 km gradient, while symbiont populations are clearly structured between vent locations due to a combination of neutral and selective processes. Overall, these results suggest that host individuals flexibly associate with local strains of their specific symbiont phylotypes, which confirms a model of horizontal transmission in both Ifremeria and Alviniconcha. Strain flexibility in these snails likely enables host populations to exploit a range of habitat conditions, which might favor wide-spread genetic connectivity and ecological resilience unless physical dispersal barriers are present.

scholarly journals Combining Multiple Markers in Environmental DNA Metabarcoding to Assess Deep-Sea Benthic Biodiversity

2021 ◽  
Vol 8 ◽  
Author(s):  
Jun Liu ◽  
Haibin Zhang
Keyword(s):  
Deep Sea ◽  
Okinawa Trough ◽  
Environmental Dna ◽  
Rrna Gene ◽  
28S Rrna ◽  
Eukaryotic Diversity ◽  
The Okinawa Trough ◽  
Marine Diversity ◽  
Deep Sea Sediments ◽  
Reference Databases

Environmental DNA (eDNA) metabarcoding is an emerging tool to estimate diversity by combining DNA from the environmental samples and the high-throughput sequencing. Despite its wide use in estimating eukaryotic diversity, many factors may bias the results. Maker choice and reference databases are among the key issues in metabarcoding analyses. In the present study, we compared the performance of a novel 28S rRNA gene marker designed in this study and two commonly used 18S rRNA gene markers (V1-2 and V9) in estimating the eukaryotic diversity in the deep-sea sediments. The metabarcoding analyses based on the sediment surveys of the Okinawa Trough found that more eukaryotic taxa were discovered by 18S V9 than 28S and 18S V1-2, and that 18S V9 also performed better in metazoan recovery than the other two markers. Although a broad range of taxa were detected by the three metabarcoding markers, only a small proportion of taxa were shared between them even at the phylum level. The non-metric multidimensional scaling (NMDS) analysis also supported that communities detected by the three markers were distinct from each other. In addition, different communities were resolved by different reference databases (NCBI nt vs. SILVA) for the two 18S markers. Combining the three markers, annelids were found to be the most abundant (44.9%) and diverse [179 operational taxonomic units (OTUs)] metazoan group in the sediments of the Okinawa Trough. Therefore, multiple independent markers are recommended to be used in metabarcoding analyses during marine diversity surveys, especially for the poorly understood deep-sea sediments.

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