Characterization of copy number variants in a large multibreed population of beef and dairy cattle using high-density single nucleotide polymorphism genotype data1

Pierce Rafter; Deirdre C Purfield; Donagh P Berry; Andrew C Parnell; I Claire Gormley; J Francis Kearney; Mike P Coffey; Tara R Carthy

doi:10.1093/jas/sky302

Characterization of copy number variants in a large multibreed population of beef and dairy cattle using high-density single nucleotide polymorphism genotype data1

Journal of Animal Science ◽

10.1093/jas/sky302 ◽

2018 ◽

Vol 96 (10) ◽

pp. 4112-4124 ◽

Cited By ~ 3

Author(s):

Pierce Rafter ◽

Deirdre C Purfield ◽

Donagh P Berry ◽

Andrew C Parnell ◽

I Claire Gormley ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

Copy Number ◽

Copy Number Variants ◽

High Density ◽

Single Nucleotide Polymorphism Genotype ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

BMC Genomics ◽

10.1186/s12864-020-6627-8 ◽

2020 ◽

Vol 21 (1) ◽

Cited By ~ 1

Author(s):

Pierce Rafter ◽

Isobel Claire Gormley ◽

Andrew C. Parnell ◽

John Francis Kearney ◽

Donagh P. Berry

Keyword(s):

Single Nucleotide Polymorphism ◽

Copy Number ◽

Copy Number Variants ◽

High Density ◽

Concordance Rate ◽

Single Nucleotide Polymorphism Genotype ◽

Medium Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Genome-wide profiling of DNA copy number abnormalities in adult acute myeloid leukemia (AML) using high density single nucleotide polymorphism array

Journal of Clinical Oncology ◽

10.1200/jco.2008.26.15_suppl.7023 ◽

2008 ◽

Vol 26 (15_suppl) ◽

pp. 7023-7023

Author(s):

E. Ottaviani ◽

I. Iacobucci ◽

A. Astolfi ◽

F. Salmi ◽

N. Testoni ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Acute Myeloid Leukemia ◽

Copy Number ◽

Myeloid Leukemia ◽

Single Nucleotide Polymorphism Array ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide ◽

Acute Myeloid

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Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

Journal of Dairy Science ◽

10.3168/jds.2011-5019 ◽

2012 ◽

Vol 95 (7) ◽

pp. 4114-4129 ◽

Cited By ~ 329

Author(s):

M. Erbe ◽

B.J. Hayes ◽

L.K. Matukumalli ◽

S. Goswami ◽

P.J. Bowman ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Cattle Breeds ◽

Improving Accuracy ◽

Genomic Predictions

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Genome-Wide Loss of Heterozygosity and Copy Number Analysis in Melanoma Using High-Density Single-Nucleotide Polymorphism Arrays

Cancer Research ◽

10.1158/0008-5472.can-06-4152 ◽

2007 ◽

Vol 67 (6) ◽

pp. 2632-2642 ◽

Cited By ~ 166

Author(s):

Mitchell Stark ◽

Nicholas Hayward

Keyword(s):

Single Nucleotide Polymorphism ◽

Loss Of Heterozygosity ◽

Copy Number ◽

High Density ◽

Copy Number Analysis ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide

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Genome-wide analysis of copy number changes and loss of heterozygosity in myelodysplastic syndrome with del(5q) using high-density single nucleotide polymorphism arrays

Haematologica ◽

10.3324/haematol.12603 ◽

2008 ◽

Vol 93 (7) ◽

pp. 994-1000 ◽

Cited By ~ 30

Author(s):

L. Wang ◽

C. Fidler ◽

N. Nadig ◽

A. Giagounidis ◽

M. G. Della Porta ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Myelodysplastic Syndrome ◽

Loss Of Heterozygosity ◽

Copy Number ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide Analysis ◽

Genome Wide ◽

Copy Number Changes

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Characterization of an X-chromosomal non-mosaic monosomy (59, X0) dairy heifer detected using routinely available single nucleotide polymorphism genotype data1

Journal of Animal Science ◽

10.2527/jas.2016.1279 ◽

2017 ◽

Vol 95 (3) ◽

pp. 1042-1049 ◽

Cited By ~ 4

Author(s):

D. P. Berry ◽

A. Wolfe ◽

J. O'Donovan ◽

N. Byrne ◽

R. G. Sayers ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Single Nucleotide Polymorphism Genotype ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Dairy Heifer

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Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

BMC Genetics ◽

10.1186/s12863-016-0335-z ◽

2016 ◽

Vol 17 (1) ◽

Cited By ~ 16

Author(s):

Shinji Sasaki ◽

Toshio Watanabe ◽

Shota Nishimura ◽

Yoshikazu Sugimoto

Keyword(s):

Single Nucleotide Polymorphism ◽

Copy Number Variation ◽

Copy Number ◽

Single Nucleotide Polymorphism Array ◽

High Density ◽

Nucleotide Polymorphism ◽

Japanese Black Cattle ◽

Single Nucleotide ◽

Genome Wide ◽

Number Variation

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Characterization of an X-chromosomal non-mosaic monosomy (59, X0) dairy heifer detected using routinely available single nucleotide polymorphism genotype data

Journal of Animal Science ◽

10.2527/jas2016.1279 ◽

2017 ◽

Vol 95 (3) ◽

pp. 1042

Author(s):

D. P. Berry ◽

A. Wolfe ◽

J. O’Donovan ◽

N. Byrne ◽

R. G. Sayers ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Single Nucleotide Polymorphism Genotype ◽

Genotype Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Dairy Heifer

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Erratum to “Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels” (J. Dairy Sci. 95:4114–4129)

Journal of Dairy Science ◽

10.3168/jds.2014-97-10-6622 ◽

2014 ◽

Vol 97 (10) ◽

pp. 6622 ◽

Cited By ~ 5

Author(s):

M. Erbe ◽

B.J. Hayes ◽

L.K. Matukumalli ◽

S. Goswami ◽

P.J. Bowman ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Cattle Breeds ◽

Improving Accuracy ◽

Genomic Predictions

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Intracystic Papillary Carcinoma of Breast Harbors Significant Genomic Alteration Compared with Intracystic Papilloma: Genome-wide Copy Number and LOH Analysis Using High-Density Single-Nucleotide Polymorphism Microarrays

The Breast Journal ◽

10.1111/j.1524-4741.2011.01110.x ◽

2011 ◽

Vol 17 (4) ◽

pp. 427-430 ◽

Cited By ~ 6

Author(s):

Masahiro Oikawa ◽

Takeshi Nagayasu ◽

Hiroshi Yano ◽

Tomayoshi Hayashi ◽

Kuniko Abe ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Papillary Carcinoma ◽

Copy Number ◽

High Density ◽

Genomic Alteration ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide ◽

Intracystic Papillary Carcinoma ◽

Intracystic Papilloma

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