scholarly journals MAPPING CHROMOSOMAL GENES OF SACCHAROMYCES CEREVISIAE USING AN IMPROVED GENETIC MAPPING METHOD

Genetics ◽  
1979 ◽  
Vol 92 (3) ◽  
pp. 803-821
Author(s):  
Reed B Wickner
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Genetic Mapping ◽  
Rapid Method ◽  
Genetic Map ◽  
Mapping Method ◽  
Single Chromosome ◽  
Meiotic Analysis ◽  
Chromosomal Genes ◽  
Killer Plasmid ◽  
Standard Marker

ABSTRACT A triploid (3n) strain of Saccharomyces cereuisiae was constructed carrying a standard marker on each of chromosomes I through XVII in the ——/+J+ configuration. This is called a "supertriploid." Meiotic spores from this strain (n + ∼ n/2) were mated with a haploid (n) carrying an unmapped mutation. Meiotic analysis of each zygote clone (2n + ∼ n/2) produced in this way resulted in elimination of an average of 4.2 chromosomes as the possible location of the unmapped marker. The distribution of extra chromosomes in the 2n + ∼ n/2) strains was nearly random. Meiotic segregrants of these crosses carrying the unmapped mutation in the -/+ configuration were then crossed with multiply marked haploid strains to further narrow the possible location of the unmapped mutation to a single chromosome. Scoring of markers by complemention tests was simplified by mating spore clones with mixtures of a and α strains, each pair carrying the same set of markers. Using this new, more rapid method ("supertriploid mapping"), eight genes required for the maintenance of the killer plasmid were located on the genetic map of S. cerevisiae.

scholarly journals TWO CHROMOSOMAL GENES REQUIRED FOR KILLING EXPRESSION IN KILLER STRAINS OF SACCHAROMYCES CEREVISIAE

Genetics ◽  
1976 ◽  
Vol 82 (3) ◽  
pp. 429-442
Author(s):  
Reed B Wickner ◽  
Michael J Leibowitz
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Molecular Weight ◽  
Mutant Phenotype ◽  
Wild Type ◽  
Double Stranded Rna ◽  
Killer Strain ◽  
Chromosomal Genes ◽  
Complementation Groups ◽  
Killer Plasmid ◽  
Type Strains

ABSTRACT The killer character of yeast is determined by a 1.4 × 106 molecular weight double-stranded RNA plasmid and at least 12 chromosomal genes. Wild-type strains of yeast that carry this plasmid (killers) secrete a toxin which is lethal only to strains not carrying this plasmid (sensitives). —— We have isolated 28 independent recessive chromosomal mutants of a killer strain that have lost the ability to secrete an active toxin but remain resistant to the effects of the toxin and continue to carry the complete cytoplasmic killer genome. These mutants define two complementation groups, kex1 and kex2. Kex1 is located on chromosome VII between ade5 and lys5. Kex2 is located on chromosome XIV, but it does not show meiotic linkage to any gene previously located on this chromosome. —— When the killer plasmid of kex1 or kex2 strains is eliminated by curing with heat or cycloheximide, the strains become sensitive to killing. The mutant phenotype reappears among the meiotic segregants in a cross with a normal killer. Thus, the kex phenotype does not require an alteration of the killer plasmid. —— Kex1 and kex2 strains each contain near-normal levels of the 1.4 × 106 molecular weight double-stranded RNA, whose presence is correlated with the presence of the killer genome.

scholarly journals Genetic mapping of Ty elements in Saccharomyces cerevisiae.

1984 ◽  
Vol 4 (2) ◽  
pp. 329-339 ◽  
Author(s):  
H L Klein ◽  
T D Petes
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Statistical Analysis ◽  
Genetic Mapping ◽  
Transposable Element ◽  
Genetic Map ◽  
Selectable Marker ◽  
Repeated Element ◽  
Ty Elements ◽  
Reciprocal Exchange ◽  
Leu2 Gene

We used transformation to insert a selectable marker at various sites in the Saccharomyces cerevisiae genome occupied by the transposable element Ty. The vector CV9 contains the LEU2+ gene and a portion of the repeated element Ty1-17. Transformation with this plasmid resulted in integration of the vector via a reciprocal exchange using homology at the LEU2 locus or at the various Ty elements that are dispersed throughout the S. cerevisiae genome. These transformants were used to map genetically sites of several Ty elements. The 24 transformants recovered at Ty sites define 19 distinct loci. Seven of these were placed on the genetic map. Two classes of Ty elements were identified in these experiments: a Ty1-17 class and Ty elements different from Ty1-17. Statistical analysis of the number of transformants at each class of Ty elements shows that there is preferential integration of the CV9 plasmid into the Ty1-17 class.

scholarly journals [HOK], A NEW YEAST NON-MENDELIAN TRAIT, ENABLES A REPLICATION-DEFECTIVE KILLER PLASMID TO BE MAINTAINED

Genetics ◽  
1982 ◽  
Vol 100 (2) ◽  
pp. 159-174
Author(s):  
Reed B Wickner ◽  
Akio Toh-E
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Copy Number ◽  
Double Stranded Rna ◽  
Protein Toxin ◽  
Defective Mutant ◽  
Chromosomal Genes ◽  
Killer Plasmid ◽  
New Yeast ◽  
Lower Copy ◽  
Host Strains

ABSTRACT The K1 killer plasmid, [KIL-k1], of Saccharomyces cerevisiae is a 1.25 × 106 dalton linear double-stranded RNA plasmid coding for a protein toxin and immunity to that toxin. The [KIL-sd1] plasmid is a replication-defective mutant of [KIL-k1] that depends on one of the recessive chromosomal superkiller (ski  -) mutations for its maintenance (Toh-e and Wickner 1979). This report concerns a means by which [KIL-sd1] can be stably maintained in a SKI  + host. Strains carrying a plasmid we call [HOK] (helper of killer) stably maintain [KIL-sd1]. [HOK] segregates 4 [HOK]:0 in meiotic crosses and is efficiently transferred by cytoplasmic mixing (heterokaryon formation). [HOK] depends for its maintenance on the products of PET18, MAK3, and MAK10, three chromosomal genes needed to maintain [KIL-k1], but is independent of 10 other MAK genes and of MKT1. [HOK] is not mitochondrial DNA and is unaffected by agents which convert ψ+ strains to ψ-. [HOK] is also distinct from the previously described plasmids [URE3], 20S RNA, 2 µ DNA, and [EXL]. Strains lacking [HOK] consistently have a four-fold lower copy number of L double-stranded RNA than strains carrying [HOK].

scholarly journals MUTANTS OF THE KILLER PLASMID OF SACCHAROMYCES CEREVISIAE DEPENDENT ON CHROMOSOMAL DIPLOIDY FOR EXPRESSION AND MAINTENANCE

Genetics ◽  
1976 ◽  
Vol 82 (2) ◽  
pp. 273-285
Author(s):  
Reed B Wickner
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Elevated Temperature ◽  
Mating Type ◽  
Chromosomal Gene ◽  
Wild Type ◽  
Opposite Mating Type ◽  
Diploid Clone ◽  
Wild Type Phenotype ◽  
Chromosomal Genes ◽  
Killer Plasmid

ABSTRACT Mutants of the killer plasmid of Saccharomyecs cerevisiaehave been isolated that depend upon chromosomal diploidy for the expression of plasmid functions and for replication or maintenance of the plasmid itself. These mutants are not defective in any chromosomal gene needed for expression or replication of the killer plasmid.—Haploids carrying these mutant plasmids (called d for diploid-dependent) are either unable to kill or unable to resist being killed or both and show frequent loss of the plasmid. The wild-type phenotype (K+R+) is restored by mating the d plasmid-carrying strain with either (a) a wild-type sensitive strain which apparently has no killer plasmid; (b) a strain which has been cured of the killer plasmid by growth at elevated temperature; (c) a strain which has been cured of the plasmid by growth in the presence of cycloheximide; (d) a strain which has lost the plasmid because it carries a mutation in a chromosomal mak gene; or (e) a strain of the opposite mating type which carries the same d plasmid and has the same defective phenotype, indicating that the restoration of the normal phenotype is not due to recombination between plasmid genomes or complementation of plasmid or chromosomal genes.—Sporulation of the phenotypically K+R+ diploids formed in matings between d and wild-type nonkiller strains yields tetrads, all four of whose haploid spores are defective for killing or resistance or maintenance of the plasmid or a combination of these. Every defective phenotype may be found among the segregants of a single diploid clone carrying a d plasmid. These defective segregants resume the normal killer phenotype in the diploids formed when a second round of mating is performed, and the segregants from a second round of meiosis and sporulation are again defective.

Genetic mapping of Ty elements in Saccharomyces cerevisiae

1984 ◽  
Vol 4 (2) ◽  
pp. 329-339
Author(s):  
H L Klein ◽  
T D Petes
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Statistical Analysis ◽  
Genetic Mapping ◽  
Transposable Element ◽  
Genetic Map ◽  
Selectable Marker ◽  
Repeated Element ◽  
Ty Elements ◽  
Reciprocal Exchange ◽  
Leu2 Gene

We used transformation to insert a selectable marker at various sites in the Saccharomyces cerevisiae genome occupied by the transposable element Ty. The vector CV9 contains the LEU2+ gene and a portion of the repeated element Ty1-17. Transformation with this plasmid resulted in integration of the vector via a reciprocal exchange using homology at the LEU2 locus or at the various Ty elements that are dispersed throughout the S. cerevisiae genome. These transformants were used to map genetically sites of several Ty elements. The 24 transformants recovered at Ty sites define 19 distinct loci. Seven of these were placed on the genetic map. Two classes of Ty elements were identified in these experiments: a Ty1-17 class and Ty elements different from Ty1-17. Statistical analysis of the number of transformants at each class of Ty elements shows that there is preferential integration of the CV9 plasmid into the Ty1-17 class.

scholarly journals DELETION OF MITOCHONDRIAL DNA BYPASSING A CHROMOSOMAL GENE NEEDED FOR MAINTENANCE OF THE KILLER PLASMID OF YEAST

Genetics ◽  
1977 ◽  
Vol 87 (3) ◽  
pp. 441-452
Author(s):  
Reed B Wickner
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Mitochondrial Dna ◽  
Mitochondrial Genome ◽  
Antimycin A ◽  
Chromosomal Gene ◽  
Wild Type ◽  
Suppressor Mutations ◽  
Induced Mutants ◽  
Chromosomal Genes ◽  
Killer Plasmid

ABSTRACT Strains of Saccharomyces cerevisiae carrying a 1.4 × 106 dalton double-stranded (ds) RNA in virus-like particles (the killer plasmid or virus) secrete a toxin that is lethal to strains not carrying this plasmid (virus). The mak10 gene is one of 24 chromosomal genes (called pets, mak1, mak2,…) that are needed to maintain and replicate the killer plasmid. We report here isolation of spontaneous and induced mutants in which the killer plasmid is maintained and replicated in spite of a defect in the mak10 gene. The bypass (or suppressor) mutations in these strains are in the mitochondrial genome. Respiratory deficiency produced by various chromosomal pet mutations, by chloramphenicol, or by antimycin A, does not bypass the mak10-1 mutation. Several spontaneous mak10-1 killer strains have about 12-fold more of the killer plasmid ds RNA than do wild-type killers. Although the absence of mitochondrial DNA bypasses mak10-1, it does not bypass pets-1, mak1-1, mak3-1, mak4-1, mak5-1, mak6-1, mak7-1, or mak8-1.

scholarly journals TWENTY-SIX CHROMOSOMAL GENES NEEDED TO MAINTAIN THE KILLER DOUBLE-STRANDED RNA PLASMID OF SACCHAROMYCES CEREVISIAE

Genetics ◽  
1978 ◽  
Vol 88 (3) ◽  
pp. 419-425
Author(s):  
Reed B Wickner
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Gene Product ◽  
Double Stranded Rna ◽  
Plasmid Maintenance ◽  
Protein Toxin ◽  
Yeast Strains ◽  
Chromosomal Genes ◽  
Complementation Groups ◽  
Killer Plasmid

ABSTRACT The double-stranded RNA killer plasmid gives yeast strains carrying it both the ability to secrete a protein toxin and immunity to that toxin. This report describes a new series of mutants in chromsomal genes needed for killer plasmid maintenance (mak genes). These mutants comprise 12 complementation groups. There are a total of at least 26 mak genes. Each mak gene product is needed for plasmid maintenance in diploids as well as in haploids. None of these mak mutations prevent the killer plasmid from entering the mak  - spores in the process of meiotic sporulation. Complementation between mak mutants can be performed by mating meiotic spores from a makx/α plasmid-carrying diploid with a maky haploid. If x = y, about half the diploid clones formed lose the killer plasmid. If x # y, complementation occurs, and all of the diploid clones are killers.

Genetic map of Saccharomyces cerevisiae.

1980 ◽  
Vol 44 (4) ◽  
pp. 519-571 ◽  
Author(s):  
R K Mortimer ◽  
D Schild
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Genetic Map

scholarly journals Fast genetic mapping using insertion-deletion polymorphisms in Caenorhabditis elegans

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Ho-Yon Hwang ◽  
Jiou Wang
Keyword(s):  
Caenorhabditis Elegans ◽  
Genetic Mapping ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genetic Material ◽  
Mapping Method ◽  
Forward Genetics ◽  
Whole Genome ◽  
Nucleotide Polymorphisms ◽  
Large Populations

AbstractGenetic mapping is used in forward genetics to narrow the list of candidate mutations and genes corresponding to the mutant phenotype of interest. Even with modern advances in biology such as efficient identification of candidate mutations by whole-genome sequencing, mapping remains critical in pinpointing the responsible mutation. Here we describe a simple, fast, and affordable mapping toolkit that is particularly suitable for mapping in Caenorhabditis elegans. This mapping method uses insertion-deletion polymorphisms or indels that could be easily detected instead of single nucleotide polymorphisms in commonly used Hawaiian CB4856 mapping strain. The materials and methods were optimized so that mapping could be performed using tiny amount of genetic material without growing many large populations of mutants for DNA purification. We performed mapping of previously known and unknown mutations to show strengths and weaknesses of this method and to present examples of completed mapping. For situations where Hawaiian CB4856 is unsuitable, we provide an annotated list of indels as a basis for fast and easy mapping using other wild isolates. Finally, we provide rationale for using this mapping method over other alternatives as a part of a comprehensive strategy also involving whole-genome sequencing and other methods.

Cloning and genetic mapping of SNF1, a gene required for expression of glucose-repressible genes in Saccharomyces cerevisiae

1984 ◽  
Vol 4 (1) ◽  
pp. 49-53
Author(s):  
J L Celenza ◽  
M Carlson
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Genetic Mapping ◽  
Gene Product ◽  
Structural Gene ◽  
Glucose Repression ◽  
Carbon Sources ◽  
Recombinant Plasmids ◽  
The Right ◽  
Integrating Vector

A functional SNF1 gene product is required to derepress expression of many glucose-repressible genes in Saccharomyces cerevisiae. Strains carrying a snf1 mutation are unable to grow on sucrose, galactose, maltose, melibiose, or nonfermentable carbon sources; utilization of these carbon sources is regulated by glucose repression. The inability of snf1 mutants to utilize sucrose results from failure to derepress expression of the structural gene for invertase at the RNA level. We isolated recombinant plasmids carrying the SNF1 gene by complementation of the snf1 defect in S. cerevisiae. A 3.5-kilobase region is common to the DNA segments cloned in five different plasmids. Transformation of S. cerevisiae with an integrating vector carrying a segment of the cloned DNA resulted in integration of the plasmid at the SNF1 locus. This result indicates that the cloned DNA is homologous to sequences at the SNF1 locus. By mapping a plasmid marker linked to SNF1 in this transformant, we showed that the SNF1 gene is located on chromosome IV. We then mapped snf1 to a position 5.6 centimorgans distal to rna3 on the right arm; snf1 is not extremely closely linked to any previously mapped mutation.

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