scholarly journals Role of Host-Driven Mutagenesis in Determining Genome Evolution of Sigma Virus (DMelSV; Rhabdoviridae) inDrosophila melanogaster

2016 ◽  
Vol 8 (9) ◽  
pp. 2952-2963 ◽  
Author(s):  
Helen Piontkivska ◽  
Luis F. Matos ◽  
Sinu Paul ◽  
Brian Scharfenberg ◽  
William G. Farmerie ◽  
...  
Keyword(s):  
2021 ◽  
pp. 1-8
Author(s):  
Naiara P. Araújo ◽  
Radarane S. Sena ◽  
Cibele R. Bonvicino ◽  
Gustavo C.S. Kuhn ◽  
Marta Svartman

<i>Proechimys</i> species are remarkable for their extensive chromosome rearrangements, representing a good model to understand genome evolution. Herein, we cytogenetically analyzed 3 different cytotypes of <i>Proechimys</i> gr. <i>goeldii</i> to assess their evolutionary relationship. We also mapped the transposable element SINE-B1 on the chromosomes of <i>P.</i> gr. <i>goeldii</i> in order to investigate its distribution among individuals and evaluate its possible contribution to karyotype remodeling in this species. SINE-B1 showed a dispersed distribution along chromosome arms and was also detected at the pericentromeric regions of some chromosomes, including pair 1 and the sex chromosomes, which are involved in chromosome rearrangements. In addition, we describe a new cytotype for <i>P.</i> gr. <i>goeldii</i>, reinforcing the significant role of gross chromosomal rearrangements during the evolution of the genus. The results of FISH with SINE-B1 suggest that this issue should be more deeply investigated for a better understanding of its role in the mechanisms involved in the wide variety of <i>Proechimys</i> karyotypes.


2004 ◽  
Vol 34 (1/2) ◽  
pp. 143-149 ◽  
Author(s):  
Claudio Anselmi ◽  
Pasquale de Santis ◽  
Raffaella Paparcone ◽  
Maria Savino ◽  
Anita Scipioni
Keyword(s):  

2009 ◽  
Vol 9 (1) ◽  
Author(s):  
Andrew M Schurko ◽  
John M Logsdon ◽  
Brian D Eads

2021 ◽  
Author(s):  
Tyrome Steven Sweet ◽  
Suzanne Sindi ◽  
Mark Sistrom

Prophages have important roles in virulence, antibiotic resistance and genome evolution in Staphylococcus aureus. Rapid growth in the number of sequenced S. aureus genomes allows for an investigation of prophage sequences in S. aureus at an unprecedented scale. We developed a computational pipeline to detect and analyze prophage sequences in nearly 10,011 S. aureus genomes, discovering thousands of putative prophage sequences with genes encoding virulence factors and antibiotic resistance.


Genome ◽  
2014 ◽  
Vol 57 (5) ◽  
pp. 279-288 ◽  
Author(s):  
Ali Soltani ◽  
Farhad Ghavami ◽  
Mohamed Mergoum ◽  
Justin Hegstad ◽  
Andrzej Noyszewski ◽  
...  

2013 ◽  
Vol 59 (5) ◽  
pp. 667-674 ◽  
Author(s):  
Fabrice Eroukhmanoff ◽  
Richard I. Bailey ◽  
Glenn-Peter Sætre

Abstract Homoploid hybrid speciation (HHS) involves the recombination of two differentiated genomes into a novel, functional one without a change in chromosome number. Theoretically, there are numerous ways for two parental genomes to recombine. Hence, chance may play a large role in the formation of a hybrid species. If these genome combinations can evolve rapidly following hybridization and sympatric situations are numerous, recurrent homoploid hybrid speciation is a possibility. We argue that three different, but not mutually exclusive, types of contingencies could influence this process. First, many of these “hopeful monsters” of recombinant parent genotypes would likely have low fitness. Only specific combinations of parental genomic contributions may produce viable, intra-fertile hybrid species able to accommodate potential constraints arising from intragenomic conflict. Second, ecological conditions (competition, geography of the contact zones or the initial frequency of both parent species) might favor different outcomes ranging from sympatric coexistence to the formation of hybrid swarms and ultimately hybrid speciation. Finally, history may also play an important role in promoting or constraining recurrent HHS if multiple hybridization events occur sequentially and parental divergence or isolation differs along this continuum. We discuss under which conditions HHS may occur multiple times in parallel and to what extent recombination and selection may fuse the parent genomes in the same or different ways. We conclude by examining different approaches that might help to solve this intriguing evolutionary puzzle.


2009 ◽  
Vol 3 (9) ◽  
pp. 1012-1035 ◽  
Author(s):  
Michelle A Allen ◽  
Federico M Lauro ◽  
Timothy J Williams ◽  
Dominic Burg ◽  
Khawar S Siddiqui ◽  
...  

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