PolyprOnline: polyproline helix II and secondary structure assignment database

R. Chebrek; S. Leonard; A. G. de Brevern; J.-C. Gelly

doi:10.1093/database/bau102

PolyprOnline: polyproline helix II and secondary structure assignment database

Database ◽

10.1093/database/bau102 ◽

2014 ◽

Vol 2014 (0) ◽

pp. bau102-bau102 ◽

Cited By ~ 20

Author(s):

R. Chebrek ◽

S. Leonard ◽

A. G. de Brevern ◽

J.-C. Gelly

Keyword(s):

Secondary Structure ◽

Secondary Structure Assignment ◽

Structure Assignment

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Secondary Structure Assignment of Amyloid-β Peptide Using Chemical Shifts

Journal of Chemical Theory and Computation ◽

10.1021/ct200156e ◽

2011 ◽

Vol 7 (5) ◽

pp. 1552-1563 ◽

Cited By ~ 12

Author(s):

Geoffrey P. F. Wood ◽

Ursula Rothlisberger

Keyword(s):

Secondary Structure ◽

Chemical Shifts ◽

Amyloid Β ◽

Amyloid Β Peptide ◽

Secondary Structure Assignment ◽

Structure Assignment

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New method for protein secondary structure assignment based on a simple topological descriptor

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.20471 ◽

2005 ◽

Vol 60 (3) ◽

pp. 513-524 ◽

Cited By ~ 17

Author(s):

Todd Taylor ◽

Margarita Rivera ◽

Glenda Wilson ◽

Iosif I. Vaisman

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

New Method ◽

Topological Descriptor ◽

Secondary Structure Assignment ◽

Structure Assignment

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STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

Nucleic Acids Research ◽

10.1093/nar/gkh429 ◽

2004 ◽

Vol 32 (Web Server) ◽

pp. W500-W502 ◽

Cited By ~ 538

Author(s):

M. Heinig ◽

D. Frishman

Keyword(s):

Secondary Structure ◽

Web Server ◽

Secondary Structure Assignment ◽

Structure Assignment ◽

Atomic Coordinates

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Protein secondary structure assignment using pc-polyline and convolutional neuron network

10.22541/au.160266787.79641281/v1 ◽

2020 ◽

Author(s):

Lincong Wang ◽

Chen Cao ◽

Shuxue Zuo

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

Neuron Network ◽

Secondary Structure Assignment ◽

Structure Assignment

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Secondary Structure Assignment

Structural Bioinformatics - Methods of Biochemical Analysis ◽

10.1002/0471721204.ch17 ◽

2005 ◽

pp. 339-363 ◽

Cited By ~ 3

Author(s):

Claus A. F. Andersen ◽

Burkhard Rost

Keyword(s):

Secondary Structure ◽

Secondary Structure Assignment ◽

Structure Assignment

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SABA (secondary structure assignment program based on only alpha carbons): a novel pseudo center geometrical criterion for accurate assignment of protein secondary structures

BMB Reports ◽

10.5483/bmbrep.2011.44.2.118 ◽

2011 ◽

Vol 44 (2) ◽

pp. 118-122 ◽

Cited By ~ 10

Author(s):

Sang-Youn Park ◽

Min-Jae Yoo ◽

Jae-Min Shin ◽

Kwang-Hwi Cho

Keyword(s):

Secondary Structure ◽

Secondary Structures ◽

Protein Secondary Structures ◽

Secondary Structure Assignment ◽

Structure Assignment

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A protein short motif search tool using amino acid sequence and their secondary structure assignment

Bioinformation ◽

10.6026/007/97320630007304 ◽

2011 ◽

Vol 7 (6) ◽

pp. 304-306 ◽

Cited By ~ 2

Author(s):

Arun Venkataraman ◽

Teong Han Chew ◽

Zeti Azura Mohamed Hussein ◽

Mohd Shahir Shamsir

Keyword(s):

Amino Acid ◽

Secondary Structure ◽

Amino Acid Sequence ◽

Motif Search ◽

Search Tool ◽

Secondary Structure Assignment ◽

Structure Assignment

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2P002 Secondary structure assignment by consecutive pattern of main chain dihedral angles, and its estimation for beta strand structure

Seibutsu Butsuri ◽

10.2142/biophys.45.s120_2 ◽

2005 ◽

Vol 45 (supplement) ◽

pp. S120

Author(s):

S. Ohuchi ◽

H. Osoegawa ◽

K. Konko

Keyword(s):

Secondary Structure ◽

Main Chain ◽

Dihedral Angles ◽

Beta Strand ◽

Secondary Structure Assignment ◽

Structure Assignment

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Knowledge-based protein secondary structure assignment

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340230412 ◽

1995 ◽

Vol 23 (4) ◽

pp. 566-579 ◽

Cited By ~ 1652

Author(s):

Dmitrij Frishman ◽

Patrick Argos

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

Knowledge Based ◽

Secondary Structure Assignment ◽

Structure Assignment

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Toward a better understanding of structural divergences in proteins using different secondary structure assignment methods

Journal of Molecular Structure ◽

10.1016/j.molstruc.2014.01.060 ◽

2014 ◽

Vol 1063 ◽

pp. 242-250 ◽

Cited By ~ 2

Author(s):

L.F.O. Rocha

Keyword(s):

Secondary Structure ◽

Secondary Structure Assignment ◽

Structure Assignment

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