scholarly journals gVolante for standardizing completeness assessment of genome and transcriptome assemblies

2017 ◽  
Vol 33 (22) ◽  
pp. 3635-3637 ◽  
Author(s):  
Osamu Nishimura ◽  
Yuichiro Hara ◽  
Shigehiro Kuraku
Keyword(s):  
Completeness Assessment

scholarly journals Exploration of association rule mining for coding consistency and completeness assessment in inpatient administrative health data

2018 ◽  
Vol 79 ◽  
pp. 41-47 ◽  
Author(s):  
Mingkai Peng ◽  
Vijaya Sundararajan ◽  
Tyler Williamson ◽  
Evan P. Minty ◽  
Tony C. Smith ◽  
...  
Keyword(s):  
Association Rule ◽  
Association Rule Mining ◽  
Health Data ◽  
Rule Mining ◽  
Administrative Health Data ◽  
Completeness Assessment

scholarly journals An open-source framework for pulmonary fissure completeness assessment

2020 ◽  
Vol 83 ◽  
pp. 101712
Author(s):  
James C. Ross ◽  
Pietro Nardelli ◽  
Jorge Onieva ◽  
Sarah E. Gerard ◽  
Rola Harmouche ◽  
...  
Keyword(s):  
Open Source ◽  
Open Source Framework ◽  
Completeness Assessment

scholarly journals Practical guide for obtaining and validating chromosome-scale genome assemblies with Hi-C scaffolding

2021 ◽  
Author(s):  
Kazuaki Yamaguchi ◽  
Mitsutaka Kadota ◽  
Osamu Nishimura ◽  
Yuta Ohishi ◽  
Yuki Naito ◽  
...  
Keyword(s):  
Single Copy ◽  
Test Case ◽  
Range Interaction ◽  
Chromosome Conformation ◽  
Genome Sequence Assembly ◽  
Genome Wide ◽  
Reptile Species ◽  
Genome Assemblies ◽  
Massive Information ◽  
Completeness Assessment

Recent development of ecological studies has been fueled by the introduction of massive information based on chromosome-scale genome sequences, even for species whose genetic linkage was previously not accessible. This was enabled mainly by the application of Hi-C, a method for genome-wide chromosome conformation capture which was originally developed for investigating long-range interaction of chromatins. Performing genomic scaffolding using Hi-C data is highly resource-demanding in elaborate laboratory steps for sequencing sample preparation, building primary genome sequence assembly as an input, and computation for genome scaffolding using Hi-C data, followed by careful validation. This article summarizes existing solutions for these steps and provides a test case of its application to a reptile species, the Madagascar ground gecko (Paroedura picta). Among frequently exerted metrics for evaluating scaffolding results, we investigate the validity of completeness assessment using single-copy reference orthologs and report problems with the widely used program pipeline BUSCO.

scholarly journals A Research on Completeness Assessment of Blocks using DOF Restriction

2014 ◽  
Vol 51 (5) ◽  
pp. 356-361
Author(s):  
Chan Suk Kim ◽  
Jong Gye Shin ◽  
Jack You Noh
Keyword(s):  
Completeness Assessment

scholarly journals Surgical Motion-Based Automatic Objective Surgical Completeness Assessment in Endoscopic Skull Base and Sinus Surgery

2018 ◽  
Vol 79 (S 01) ◽  
pp. S1-S188
Author(s):  
Yangming Li ◽  
Randall Bly ◽  
Mark Whipple ◽  
Ian Humphreys ◽  
Blake Hannaford ◽  
...  
Keyword(s):  
Skull Base ◽  
Sinus Surgery ◽  
Surgical Motion ◽  
Completeness Assessment

scholarly journals Completeness Check of Experimental Fission Product Yield Data in EXFOR Database

2020 ◽  
Vol 242 ◽  
pp. 02002
Author(s):  
Shin Okumura
Keyword(s):  
Fission Product ◽  
Product Yield ◽  
Yield Data ◽  
Fission Product Yield ◽  
Exfor Database ◽  
Completeness Assessment ◽  
New Entry

The IAEA conducted the completeness assessment of fission product yield (FPY) data in EXFOR database against two bibliographies that were used in ENDF/B-VI and UKFY3.0 library evaluations. We found that 194 articles are found to be relevant for new entry.

scholarly journals Enabling Fine-Grained RDF Data Completeness Assessment

2016 ◽  
pp. 170-187 ◽  
Author(s):  
Fariz Darari ◽  
Simon Razniewski ◽  
Radityo Eko Prasojo ◽  
Werner Nutt
Keyword(s):  
Data Completeness ◽  
Fine Grained ◽  
Rdf Data ◽  
Completeness Assessment

scholarly journals Real-world data in retinal diseases treated with anti-vascular endothelial growth factor (anti-VEGF) therapy – a systematic approach to identify and characterize data sources

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Vincent Daien ◽  
Bora M. Eldem ◽  
James S. Talks ◽  
Jean-Francois Korobelnik ◽  
Paul Mitchell ◽  
...  
Keyword(s):  
Clinical Outcomes ◽  
Real World ◽  
Retinal Disease ◽  
Retinal Diseases ◽  
Real World Data ◽  
Patient Reported ◽  
Baseline Status ◽  
Data Source ◽  
Areas Of Interest ◽  
Completeness Assessment

Abstract Background Real-world data (RWD) has been a valuable addition to the scientific literature regarding treatment pathways, clinical outcomes and characteristics of patients with retinal diseases in recent years. Registries, observational studies and patient databases are often used for real-world research. However, there is limited information for each data source on the design, consistency, data captured, limitations and usability for assessing research questions. Using a systematic approach, we identified RWD sources for patients with retinal diseases and assessed them for completeness of data relating to different outcomes. Methods A systematic literature review was carried out to identify RWD sources for patients with retinal disease. Potentially relevant articles published between 2006 and 2016 were screened following electronic searches in Embase and MEDLINE. Congress and supplementary searches were undertaken to identify RWD sources that may not be referenced in full publications. For each data source, availability and quantity of data on baseline status, clinical outcomes, treatment and management, safety, and patient-reported and economic burden were assessed using a bespoke completeness assessment tool based on International Consortium for Health Outcomes Measurement guidelines for macular degeneration. Completeness of data for each area of interest in each data source was assessed and rated using a ‘good–moderate–poor’ rating system based on availability and quantity of available data. Each data source was then given an overall score based on its score for each of the 7 areas of interest. Results A total of 128 RWD sources from 32 countries were identified. Of the identified sources, 64 sources from 16 countries of interest were analyzed. Most of these sources provided information on baseline status and clinical outcomes and treatment, but few collected data on economic and patient-reported burden. Of the RWD sources analyzed, 10 scored highly in the overall completeness assessment, collecting data on most or all of the areas of interest; these sources are considered to be robust data sources for performing ophthalmology real-world studies. Conclusions The study provides a comprehensive list of RWD sources for patients with retinal disease, many of which will be useful for conducting real-world studies in the field of ophthalmology.

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