scholarly journals CPSS: a computational platform for the analysis of small RNA deep sequencing data

2012 ◽  
Vol 28 (14) ◽  
pp. 1925-1927 ◽  
Author(s):  
Yuanwei Zhang ◽  
Bo Xu ◽  
Yifan Yang ◽  
Rongjun Ban ◽  
Huan Zhang ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Small Rna ◽  
Sequencing Data ◽  
Deep Sequencing Data ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing ◽  
Computational Platform

scholarly journals Biases in small RNA deep sequencing data

2013 ◽  
Vol 42 (3) ◽  
pp. 1414-1426 ◽  
Author(s):  
Carsten A. Raabe ◽  
Thean-Hock Tang ◽  
Juergen Brosius ◽  
Timofey S. Rozhdestvensky
Keyword(s):  
Deep Sequencing ◽  
Small Rna ◽  
Sequencing Data ◽  
Deep Sequencing Data ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing

scholarly journals Oasis: online analysis of small RNA deep sequencing data

2015 ◽  
Vol 31 (13) ◽  
pp. 2205-2207 ◽  
Author(s):  
Vincenzo Capece ◽  
Julio C. Garcia Vizcaino ◽  
Ramon Vidal ◽  
Raza-Ur Rahman ◽  
Tonatiuh Pena Centeno ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Small Rna ◽  
Sequencing Data ◽  
Online Analysis ◽  
Deep Sequencing Data ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing

scholarly journals Identification of Novel MicroRNAs in Primates by Using the Synteny Information and Small RNA Deep Sequencing Data

2013 ◽  
Vol 14 (10) ◽  
pp. 20820-20832 ◽  
Author(s):  
Zhidong Yuan ◽  
Hongde Liu ◽  
Yumin Nie ◽  
Suping Ding ◽  
Mingli Yan ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Small Rna ◽  
Sequencing Data ◽  
Deep Sequencing Data ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing

scholarly journals Oasis2.0: improved online analysis of small RNA-seq data

2017 ◽  
Author(s):  
Raza-Ur Rahman ◽  
Abhivyakti Gautam ◽  
Jörn Bethune ◽  
Abdul Sattar ◽  
Maksims Fiosins ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Small Rna ◽  
Small Rnas ◽  
Web Application ◽  
The Novel ◽  
Sequencing Data ◽  
Essential Information ◽  
Deep Sequencing Data ◽  
Small Rna Deep Sequencing ◽  
User Friendly

AbstractOasis 2 is a new main release of the Oasis web application for the detection, differential expression, and classification of small RNAs in deep sequencing data. Compared to its predecessor Oasis, Oasis 2 features a novel and speed-optimized sRNA detection module that supports the identification of small RNAs in any organism with higher accuracy. Next to the improved detection of small RNAs in a target organism, the software now also recognizes potential cross-species miRNAs and viral and bacterial sRNAs in infected samples. In addition, novel miRNAs can now be queried and visualized interactively, providing essential information for over 700 high-quality miRNA predictions across 14 organisms. Robust biomarker signatures can now be obtained using the novel enhanced classification module. Oasis 2 enables biologists and medical researchers to rapidly analyze and query small RNA deep sequencing data with improved precision, recall, and speed, in an interactive and user-friendly environment.Availability and Implementation: Oasis 2 is implemented in Java, J2EE, mysql, Python, R, PHP and JavaScript. It is freely available at http://oasis.dzne.de

Identification of viruses infecting sweet potato in southern China by small RNA deep sequencing and PCR detection

2018 ◽  
Vol 85 (2) ◽  
pp. 122-127 ◽  
Author(s):  
Siqi Ma ◽  
Qiufeng Zheng ◽  
Jiajie Ye ◽  
Wendi Feng ◽  
Guohui Zhou ◽  
...  
Keyword(s):  
Sweet Potato ◽  
Deep Sequencing ◽  
Small Rna ◽  
Southern China ◽  
Pcr Detection ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing

Small RNA Deep Sequencing and the Effects of microRNA408 on Root Gravitropic Bending in Arabidopsis

2015 ◽  
Vol 27 (6) ◽  
pp. 495-503 ◽  
Author(s):  
Huasheng Li ◽  
Jinying Lu ◽  
Qiao Sun ◽  
Yu Chen ◽  
Dacheng He ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Small Rna ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing
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