Critical assessment and performance improvement of plant–pathogen protein–protein interaction prediction methods

Shiping Yang; Hong Li; Huaqin He; Yuan Zhou; Ziding Zhang

doi:10.1093/bib/bbx123

Critical assessment and performance improvement of plant–pathogen protein–protein interaction prediction methods

Briefings in Bioinformatics ◽

10.1093/bib/bbx123 ◽

2017 ◽

Vol 20 (1) ◽

pp. 274-287 ◽

Cited By ~ 12

Author(s):

Shiping Yang ◽

Hong Li ◽

Huaqin He ◽

Yuan Zhou ◽

Ziding Zhang

Keyword(s):

Performance Improvement ◽

Protein Interaction ◽

Plant Pathogen ◽

Critical Assessment ◽

Prediction Methods ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Pathogen Protein ◽

Protein Interaction Prediction ◽

And Performance

Download Full-text

Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences

BMC Bioinformatics ◽

10.1186/1471-2105-10-419 ◽

2009 ◽

Vol 10 (1) ◽

Cited By ~ 35

Author(s):

Yungki Park

Keyword(s):

Protein Interaction ◽

Protein Sequences ◽

Critical Assessment ◽

Prediction Methods ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Homologous Protein ◽

Protein Interaction Prediction

Download Full-text

Evaluation of Physical and Functional Protein-Protein Interaction Prediction Methods for Detecting Biological Pathways

PLoS ONE ◽

10.1371/journal.pone.0054325 ◽

2013 ◽

Vol 8 (1) ◽

pp. e54325 ◽

Cited By ~ 7

Author(s):

Vijaykumar Yogesh Muley ◽

Akash Ranjan

Keyword(s):

Protein Interaction ◽

Biological Pathways ◽

Prediction Methods ◽

Functional Protein ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Protein Interaction Prediction

Download Full-text

Host-Pathogen Protein-Protein Interaction Prediction Using an in silico Model

10.31274/ans_air-180814-224 ◽

2016 ◽

Author(s):

John C. F. Hsieh ◽

Robert L. Jernigan ◽

Susan J. Lamont

Keyword(s):

Protein Interaction ◽

In Silico ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

In Silico Model ◽

Host Pathogen ◽

Pathogen Protein ◽

Protein Interaction Prediction

Download Full-text

Suitability of Sequence-Based Feature Vector for Classification Algorithm Improves Accuracy of Human Protein-Protein Interaction Prediction: A Red Blood Cell Case Study

Current Bioinformatics ◽

10.2174/1574893610666151026215233 ◽

2016 ◽

Vol 11 (2) ◽

pp. 291-300 ◽

Cited By ~ 2

Author(s):

Afsaneh Maali ◽

Mahmood A. Mahdavi ◽

Reza Gheshlaghi

Keyword(s):

Blood Cell ◽

Protein Interaction ◽

Red Blood Cell ◽

Feature Vector ◽

Classification Algorithm ◽

Human Protein ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Protein Interaction Prediction

Download Full-text

HIV1-Human Protein-Protein Interaction Prediction (HHPPIP) Methodology: An FP-Growth Based Association Rule Mining Approach

Current Bioinformatics ◽

10.2174/157489361004150922150233 ◽

2015 ◽

Vol 10 (4) ◽

pp. 441-455

Author(s):

R. Ramani ◽

Shomona Jacob

Keyword(s):

Protein Interaction ◽

Association Rule ◽

Association Rule Mining ◽

Human Protein ◽

Rule Mining ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Protein Interaction Prediction

Download Full-text

Protein–Protein Interaction Prediction Based on Spectral Radius and General Regression Neural Network

Journal of Proteome Research ◽

10.1021/acs.jproteome.0c00871 ◽

2021 ◽

Vol 20 (3) ◽

pp. 1657-1665

Author(s):

Hanxiao Xu ◽

Da Xu ◽

Naiqian Zhang ◽

Yusen Zhang ◽

Rui Gao

Keyword(s):

Neural Network ◽

Spectral Radius ◽

Protein Interaction ◽

General Regression Neural Network ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Protein Interaction Prediction ◽

General Regression

Download Full-text

A Review on Compound-Protein Interaction Prediction Methods: Data, Format, Representation and Model

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2021.03.004 ◽

2021 ◽

Author(s):

Sangsoo Lim ◽

Yijingxiu Lu ◽

Chang Yun Cho ◽

Inyoung Sung ◽

Jungwoo Kim ◽

...

Keyword(s):

Protein Interaction ◽

Prediction Methods ◽

Data Format ◽

Interaction Prediction ◽

Protein Interaction Prediction

Download Full-text

Protein-Protein Interaction: Prediction, Design, and Modulation

Acta Physico-Chimica Sinica ◽

10.3866/pku.whxb201209172 ◽

2012 ◽

Vol 28 (10) ◽

pp. 2363-2380 ◽

Cited By ~ 2

Author(s):

ZHANG Chang-Sheng ◽

◽

LAI Lu-Hua ◽

◽

Keyword(s):

Protein Interaction ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Protein Interaction Prediction

Download Full-text

Exploring Cost-Sensitive Learning in Domain Based Protein-Protein Interaction Prediction

Advances in Soft Computing - The Sixth International Symposium on Neural Networks (ISNN 2009) ◽

10.1007/978-3-642-01216-7_19 ◽

2009 ◽

pp. 175-184

Author(s):

Weizhao Guo ◽

Yong Hu ◽

Mei Liu ◽

Jian Yin ◽

Kang Xie ◽

...

Keyword(s):

Protein Interaction ◽

Cost Sensitive Learning ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Protein Interaction Prediction

Download Full-text

Improving Protein-protein Interaction Prediction by Incorporating 3D Genome Information

10.1007/978-3-030-91415-8_43 ◽

2021 ◽

pp. 511-520

Author(s):

Zehua Guo ◽

Kai Su ◽

Liangjie Liu ◽

Xianbin Su ◽

Mofan Feng ◽

...

Keyword(s):

Protein Interaction ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

3D Genome ◽

Protein Interaction Prediction ◽

Genome Information

Download Full-text