Modeling Virus Self-Assembly Pathways: Avoiding Dynamics Using Geometric Constraint Decomposition

2006 ◽  
Vol 13 (6) ◽  
pp. 1232-1265 ◽  
Author(s):  
Meera Sitharam ◽  
Mavis Agbandje-Mckenna
Keyword(s):  
Self Assembly ◽  
Geometric Constraint ◽  
Constraint Decomposition ◽  
Assembly Pathways

Geometric Constraint Decomposition

1998 ◽  
pp. 170-195 ◽  
Author(s):  
Christoph M. Hoffmann ◽  
Andrew Lomonosov ◽  
Meera Sitharam
Keyword(s):  
Geometric Constraint ◽  
Constraint Decomposition

Hierarchical Self-Assembly Pathways of Peptoid Helices and Sheets

2022 ◽  
Author(s):  
Mingfei Zhao ◽  
Kacper J. Lachowski ◽  
Shuai Zhang ◽  
Sarah Alamdari ◽  
Janani Sampath ◽  
...  
Keyword(s):  
Self Assembly ◽  
Assembly Pathways

Divergent Self-Assembly Pathways to Hierarchically Organized Networks of Isopeptide-Modified Discotics under Kinetic Control

ACS Nano ◽  
2020 ◽  
Vol 14 (5) ◽  
pp. 5491-5505 ◽  
Author(s):  
Michael A. VandenBerg ◽  
Jugal Kishore Sahoo ◽  
Lei Zou ◽  
William McCarthy ◽  
Matthew J. Webber
Keyword(s):  
Self Assembly ◽  
Kinetic Control ◽  
Assembly Pathways

scholarly journals Kinetic Control of Parallel versus Antiparallel Amyloid Aggregation via Shape of the Growing Aggregate

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Ali Asghar Hakami Zanjani ◽  
Nicholas P. Reynolds ◽  
Afang Zhang ◽  
Tanja Schilling ◽  
Raffaele Mezzenga ◽  
...  
Keyword(s):  
Self Assembly ◽  
Small Scale ◽  
Kinetic Control ◽  
Amyloid Aggregation ◽  
X Ray Diffraction ◽  
Human Lysozyme ◽  
X Ray ◽  
Contact Topology ◽  
Future Design ◽  
Assembly Pathways

Abstract By combining atomistic and higher-level modelling with solution X-ray diffraction we analyse self-assembly pathways for the IFQINS hexapeptide, a bio-relevant amyloid former derived from human lysozyme. We verify that (at least) two metastable polymorphic structures exist for this system which are substantially different at the atomistic scale, and compare the conditions under which they are kinetically accessible. We further examine the higher-level polymorphism for these systems at the nanometre to micrometre scales, which is manifested in kinetic differences and in shape differences between structures instead of or as well as differences in the small-scale contact topology. Any future design of structure based inhibitors of the IFQINS steric zipper, or of close homologues such as TFQINS which are likely to have similar structures, should take account of this polymorphic assembly.

scholarly journals Leveraging Hierarchical Self-Assembly Pathways for Realizing Colloidal Photonic Crystals

ACS Nano ◽  
2020 ◽  
Vol 14 (5) ◽  
pp. 5348-5359 ◽  
Author(s):  
Abhishek B. Rao ◽  
James Shaw ◽  
Andreas Neophytou ◽  
Daniel Morphew ◽  
Francesco Sciortino ◽  
...  
Keyword(s):  
Photonic Crystals ◽  
Self Assembly ◽  
Colloidal Photonic Crystals ◽  
Assembly Pathways

Biphasic Self-Assembly Pathways and Size-Dependent Photophysical Properties of Perylene Bisimide Dye Aggregates

2013 ◽  
Vol 135 (50) ◽  
pp. 18722-18725 ◽  
Author(s):  
Franziska Fennel ◽  
Steffen Wolter ◽  
Zengqi Xie ◽  
Per-Arno Plötz ◽  
Oliver Kühn ◽  
...  
Keyword(s):  
Self Assembly ◽  
Photophysical Properties ◽  
Perylene Bisimide ◽  
Size Dependent ◽  
Assembly Pathways

Photoresponsive Nanosheets of Polyoxometalates Formed by Controlled Self-Assembly Pathways

2017 ◽  
Vol 56 (11) ◽  
pp. 2974-2978 ◽  
Author(s):  
Keita Ishiba ◽  
Takao Noguchi ◽  
Hiroaki Iguchi ◽  
Masa-aki Morikawa ◽  
Kenji Kaneko ◽  
...  
Keyword(s):  
Self Assembly ◽  
Assembly Pathways

Directed self-assembly pathways of three-dimensional Pt/Pd nanocrystal superlattice electrocatalysts for enhanced methanol oxidation reaction

2018 ◽  
Vol 6 (26) ◽  
pp. 12759-12767 ◽  
Author(s):  
Guangran Xu ◽  
Rui Si ◽  
Jiayin Liu ◽  
Luyao Zhang ◽  
Xia Gong ◽  
...  
Keyword(s):  
Methanol Oxidation ◽  
Self Assembly ◽  
Oxidation Reaction ◽  
Active Sites ◽  
Nitrogen Doping ◽  
Three Dimensional ◽  
Methanol Oxidation Reaction ◽  
Assembly Strategy ◽  
Nanocrystal Superlattices ◽  
Assembly Pathways

A new directed self-assembly strategy is developed to achieve 3D Pt/Pd nanocrystal superlattices with enhanced electrocatalytic performance for methanol oxidation reaction due to the enriched metallic Pt active sites by appropriate Pd alloying and surface nitrogen doping.

scholarly journals High-fidelity self-assembly pathways for hydrogen-bonding molecular semiconductors

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Xu Lin ◽  
Mika Suzuki ◽  
Marina Gushiken ◽  
Mitsuaki Yamauchi ◽  
Takashi Karatsu ◽  
...  
Keyword(s):  
Hydrogen Bonding ◽  
Self Assembly ◽  
High Fidelity ◽  
Molecular Semiconductors ◽  
Assembly Pathways
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