Characteristics of four novel recombinant strains from the backbone of CRF55_01B and CRF65_cpx in Beijing by near full-length genome

2021 ◽  
Author(s):  
yaping yao ◽  
Yuhong Zeng ◽  
Huihuang Huang ◽  
Jia Li ◽  
Jie Li ◽  
...  
Keyword(s):  
Full Length ◽  
Recombinant Strains ◽  
Full Length Genome

scholarly journals Emergence of Salmonid Alphavirus Genotype 2 in Norway—Molecular Characterization of Viral Strains Circulating in Norway and Scotland

Viruses ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 1556
Author(s):  
Monika J. Hjortaas ◽  
Elena Fringuelli ◽  
Adérito L. Monjane ◽  
Aase B. Mikalsen ◽  
Christine M. Jonassen ◽  
...  
Keyword(s):  
Full Length ◽  
Genomic Diversity ◽  
Last Common Ancestor ◽  
Source Of Infection ◽  
New Variant ◽  
Genotype 2 ◽  
Boat Traffic ◽  
Horizontal Spread ◽  
Full Length Genome

Pancreas disease (PD) and sleeping disease (SD), caused by an alphavirus, are endemic in European salmonid aquaculture, causing significant mortality, reduced growth and poor flesh quality. In 2010, a new variant of salmonid alphavirus emerged in Norway, marine salmonid alphavirus genotype 2 (SAV2). As this genotype is highly prevalent in Scotland, transmission through well boat traffic was hypothesized as one possible source of infection. In this study, we performed full-length genome sequencing of SAV2 sampled between 2006 and 2012 in Norway and Scotland, and present the first comprehensive full-length characterization of Norwegian marine SAV2 strains. We analyze their relationship with selected Scottish SAV2 strains and explore the genetic diversity of SAV. Our results show that all Norwegian marine SAV2 share a recent last common ancestor with marine SAV2 circulating in Scotland and a higher level of genomic diversity among the Scottish marine SAV2 strains compared to strains from Norway. These findings support the hypothesis of a single introduction of SAV2 to Norway sometime from 2006–2010, followed by horizontal spread along the coast.

Tracing the origin and history of HIV-1 subtype B′ epidemic by near full-length genome analyses

AIDS ◽  
2012 ◽  
Vol 26 (7) ◽  
pp. 877-884 ◽  
Author(s):  
Zhe Li ◽  
Xiang He ◽  
Zhe Wang ◽  
Hui Xing ◽  
Fan Li ◽  
...  
Keyword(s):  
Full Length ◽  
Subtype B ◽  
History Of ◽  
Genome Analyses ◽  
Full Length Genome ◽  
Hiv 1

Full-length genome sequence of the tospovirus melon severe mosaic virus

2017 ◽  
Vol 162 (5) ◽  
pp. 1419-1422 ◽  
Author(s):  
M. Ciuffo ◽  
L. Nerva ◽  
M. Turina
Keyword(s):  
Mosaic Virus ◽  
Genome Sequence ◽  
Full Length ◽  
Full Length Genome

Near full-length genome analysis of HCV genotype 5 strains from South Africa

2014 ◽  
Vol 21 ◽  
pp. 118-123 ◽  
Author(s):  
Maemu P. Gededzha ◽  
Selokela G. Selabe ◽  
Jason T. Blackard ◽  
Thanda Kyaw ◽  
M. Jeffrey Mphahlele
Keyword(s):  
South Africa ◽  
Genome Analysis ◽  
Full Length ◽  
Hcv Genotype ◽  
Genotype 5 ◽  
Full Length Genome

Full-length genome of a novel genotype 3 hepatitis E virus strain obtained from domestic pigs in Japan

2017 ◽  
Vol 240 ◽  
pp. 147-153 ◽  
Author(s):  
Putu Prathiwi Primadharsini ◽  
Masao Miyake ◽  
Satoshi Kunita ◽  
Tsutomu Nishizawa ◽  
Masaharu Takahashi ◽  
...  
Keyword(s):  
Virus Strain ◽  
Hepatitis E Virus ◽  
Hepatitis E ◽  
Full Length ◽  
Genotype 3 ◽  
Domestic Pigs ◽  
Novel Genotype ◽  
Full Length Genome
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