scholarly journals Genetic Diversity Assessment of Ex Situ Collections of Endangered Quercus hinckleyi

2021 ◽  
Vol 182 (3) ◽  
pp. 220-228
Author(s):  
Janet Rizner Backs ◽  
Sean Hoban ◽  
Mary V. Ashley
Author(s):  
Paula Bramel ◽  

This chapter reviews the key issues and challenges facing genebanks in preserving crop genetic diversity ex situ. Local crop genetic diversity is challenged with changes in land use, urbanization, land degradation, changes in agricultural practises, availability of improved varieties, changes in market preference, and the impact of climate change. Efforts have been made to secure plant genetic resources ex situ for future use but there are significant issues related to cost effective, efficient, secure, rational, and sustainable long-term ex situ conservation. It begins by addressing issues for the composition of ex situ collections and moves on to discuss issues for routine operations for conservation. The chapter also highlights issues for the use of conserved genetic resources, before concluding with a summary of why the development of sustainable genebank systems is so important.


2016 ◽  
Vol 64 (4) ◽  
pp. 733-744 ◽  
Author(s):  
Maria Elizabeth Boncodin Naredo ◽  
Sheila Mae Quilloy Mercado ◽  
Maria Celeste Naynes Banaticla-Hilario ◽  
Myrricar Loren Berdos ◽  
Mario Alcantara Rodriguez ◽  
...  

Author(s):  
Linda Neaves

The rapid and extensive loss of biodiversity globally has resulted in an increased urgency to capture and conserve the diversity which is present, including genetic diversity within species. However, for many species there is currently no detailed genetic data available to inform the collection and use of material held in ex situ collections and this can hamper the consideration of genetic issues and reduce the likelihood collection represent the diversity present. Even in the absence of direct genetic data, however, it is possible to consider genetic issues using the existing theoretical and empirical evidence-based and biological, ecological and demographic data for a given species. Here a framework to facilitate the consideration of genetic diversity and genetic issues, even where genetic data is lacking, is presented.


Author(s):  
Innocenzo Muzzalupo ◽  
Antonella Muto, Giuliana Badolati ◽  
Aulona Veizi ◽  
Adriana Chiappetta

The increasing interest in olive varieties with high productivity and quality is the basis of modern olive growing. The molecular characterization of olive varieties is essential to maximize the genetic diversity in the in situ and ex situ collections of the olive germplasm. The importance of studies aimed at identification and selection of genotypes that meet the requirements for plant nursery certification, for oils traceability and to preserve genotypes that are not widespread from risks of extinction, is evident. In this context, DNA fingerprinting represents a valid tool because the productivity and quality of olive oil are intrinsic characteristics of the original varieties. To date, the Albanian olive-growing heritage has been little studied and the number of varieties has not yet been well defined. As a consequence, it doesn’t a precise characterization of the Albanian genetic entities. The aim of this work was to contribute in clarifying the identity of the Albanian olive cultivars, using the SSR molecular markers. We have genotyped olive trees at the level of nine nuclear microsatellite loci or SSR, pre-selected among those present in the literature and we have identified 38 unique genotypes. It has not been possible to establish a clear correlation between clustering of plants, depending on molecular profiles, and the geographical distribution of origin or maturation period or the intended use of drupes. However, our results show a high genetic diversity and a high discrimination capacity of the tested SSR markers.  


2021 ◽  
Vol 948 (1) ◽  
pp. 012001
Author(s):  
N A Devi ◽  
R Eprilurahman ◽  
D S Yudha ◽  
S Raharjo ◽  
M As-Singkily ◽  
...  

Abstract The endemic Chelodina mccordi is considered extinct in the wild; however, ex-situ populations are thriving and sampled for our genetic diversity assessment. We used three sequences resulting from blood and tissue samples of five individual turtles amplified for 650-bp cytochrome oxidase I (COI) fragment of the mitochondrial DNA. We analysed a total of 30 barcoding DNA sequences for phylogenetic relationships and genetic distances among Chelodina spp. Nucleotide diversity of eight C. mccordi samples is 0.007 ± 0.001 with a haplotype diversity of 0.893 ± 0.086. All these samples form a monophyletic clade that is sister to a clade of Australian and New Guinean long-necked turtles. Genetic distances calculated using Kimura 2-paramater model among C. mccordi sequences range between 0.2% and 1.5%, while a few others are without distance. The shortest genetic distance is between individuals from Rote Island, whereas the longest distance was found between individuals, each of which was derived from parental stocks originating in Rote and Timor islands. A genetic distance of 1.1% - 1.5% is likely to denote distinction at subspecies level. Results of this study could help in reintroducing captive individuals into their natural habitats. Thus, captive breeding programme of this species may help its conservation.


Crop Science ◽  
2010 ◽  
Vol 50 (6) ◽  
pp. 2440-2447 ◽  
Author(s):  
Christopher M. Richards ◽  
Dale R. Lockwood ◽  
Gayle M. Volk ◽  
Christina Walters

Author(s):  
Andreas Ensslin ◽  
Sandrine Godefroid

The discipline of horticulture, growing and propagating plants under artificial conditions, has a centuries-long tradition and has developed into a vital industry of breeding, propagating and trading ornamental and wild plants around the globe. Botanic gardens have always been at the centre of horticultural training and have provided excellence and advancements in the field. In recent decades, botanic gardens have also become an active part of ex situ conservation activities by storing seeds of endangered wild plants, growing living collections for conservation purposes, or propagating plants for direct reintroduction measures. While this shift in focus has been necessary and very important, ex situ collections of wild plants have been criticised for beinggenetically impoverished, potentially hybridised with congeners, or adapted to the artificial garden conditions and potentially having lost specific adaptations to their original wild habitat. In this review, we provide an overview of these potential threats to wild plants in ex situ living collections and outline examples of how ex situ cultivation can affect genetic diversity, trait expression and adaptive responses of the plants. We evaluate what these changes could mean for the conservation value of the collections, and discuss how they could be avoided by refining horticultural practices. 


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