scholarly journals Top–down effects of a grazing, omnivorous minnow (Campostoma anomalum) on stream microbial communities

2018 ◽  
Vol 37 (1) ◽  
pp. 121-133 ◽  
Author(s):  
Allison M. Veach ◽  
Matthew J. Troia ◽  
Ari Jumpponen ◽  
Walter K. Dodds
Keyword(s):  
Microbial Communities ◽  
Top Down ◽  
Campostoma Anomalum

Viewing soil systems from the top-down can make microbial ecology predictive for ecosystem functions

2020 ◽  
Author(s):  
Johannes Rousk ◽  
Lettice Hicks
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Communities ◽  
Functional Response ◽  
Community Composition ◽  
Ecosystem Function ◽  
Response Curve ◽  
Ecosystem Processes ◽  
Ecosystem Functions ◽  
Top Down

<p>Understanding the role of ecological communities in maintaining multiple ecosystem processes is a central challenge in ecology. Soil microbial communities perform vital ecosystem functions, such as the decomposition of organic matter to provide plant nutrition. However, despite the functional importance of soil microorganisms, attribution of ecosystem function to particular constituents of the microbial community has been impeded by a lack of information linking microbial processes to community structure.</p><p>Here, we propose a new conceptual framework to determine how microbial communities influence ecosystem processes, by applying a “top-down” approach. Looking from the “top”, we first view the microbial community associated with a specific function as a whole, and describe the dependence of microbial community processes on environmental factors (e.g. the intrinsic temperature dependence of bacterial growth rates), allowing us to define the aggregate functional response curve of the community. We then demonstrate that the whole community contribution to ecosystem function can be predicted, by parameterising the functional response curve with current environmental conditions. In a final step, we show how this functional information can be linked to the taxonomic community composition (amplicon assessments of microbial community composition) in order to identify “biomarker” taxa that capture microbial communities’ regulation of ecosystem processes and the susceptibility of microbial community structure and function to environmental change. Ultimately, these biomarkers may be used as a diagnostic tool, enabling predictions of ecosystem function from community composition information combined with environmental metadata.</p>

Cascading effects of larval Crucian carp introduction on phytoplankton and microbial communities in a paddy field: top-down and bottom-up controls

2011 ◽  
Vol 26 (3) ◽  
pp. 615-626 ◽  
Author(s):  
Yoko Nishimura ◽  
Taisuke Ohtsuka ◽  
Kohei Yoshiyama ◽  
Daisuke Nakai ◽  
Fujiyoshi Shibahara ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Paddy Field ◽  
Crucian Carp ◽  
Top Down ◽  
Bottom Up ◽  
Cascading Effects

An efficient and scalable top-down method for predicting structures of microbial communities

2021 ◽  
Vol 1 (9) ◽  
pp. 619-628
Author(s):  
Aamir Faisal Ansari ◽  
Yugandhar B. S. Reddy ◽  
Janhavi Raut ◽  
Narendra M. Dixit
Keyword(s):  
Microbial Communities ◽  
Top Down

scholarly journals Directed evolution of microbial communities

2020 ◽  
Author(s):  
Alvaro Sanchez ◽  
Jean C. C. Vila ◽  
Chang-Yu Chang ◽  
Juan Diaz-Colunga ◽  
Sylvie Estrela ◽  
...  
Keyword(s):  
Structure Function ◽  
Microbial Communities ◽  
Directed Evolution ◽  
Functional Traits ◽  
Artificial Selection ◽  
Genetic Variants ◽  
Top Down ◽  
Guided Exploration ◽  
Practical Guidelines ◽  
Genotype Space

Directed evolution is a form of artificial selection that has been used for decades to find biomolecules and organisms with new or enhanced functional traits. Directed evolution can be conceptualized as a guided exploration of the genotype-phenotype map, where genetic variants with desirable phenotypes are first selected and then mutagenized to search the genotype space for an even better mutant. In recent years, the idea of applying artificial selection to microbial communities has gained momentum. Here, we review the main limitations of artificial selection when applied to large and diverse collectives of asexually dividing microbes, and discuss how the tools of directed evolution may be deployed to engineer communities from the top-down. We conceptualize directed evolution of microbial communities as a guided exploration of an ecological structure-function landscape, and propose practical guidelines for navigating these ecological landscapes.

scholarly journals Directed Evolution of Microbial Communities

2021 ◽  
Vol 50 (1) ◽  
Author(s):  
Álvaro Sánchez ◽  
Jean C.C. Vila ◽  
Chang-Yu Chang ◽  
Juan Diaz-Colunga ◽  
Sylvie Estrela ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Directed Evolution ◽  
Artificial Selection ◽  
Genetic Variants ◽  
Annual Review ◽  
Publication Date ◽  
Top Down ◽  
Guided Exploration ◽  
Practical Guidelines ◽  
Genotype Space

Directed evolution is a form of artificial selection that has been used for decades to find biomolecules and organisms with new or enhanced functional traits. Directed evolution can be conceptualized as a guided exploration of the genotype–phenotype map, where genetic variants with desirable phenotypes are first selected and then mutagenized to search the genotype space for an even better mutant. In recent years, the idea of applying artificial selection to microbial communities has gained momentum. In this article, we review the main limitations of artificial selection when applied to large and diverse collectives of asexually dividing microbes and discuss how the tools of directed evolution may be deployed to engineer communities from the top down. We conceptualize directed evolution of microbial communities as a guided exploration of an ecological structure–function landscape and propose practical guidelines for navigating these ecological landscapes. Expected final online publication date for the Annual Review of Biophysics, Volume 50 is May 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

A peek in the micro-sized world: a review of design principles, engineering tools, and applications of engineered microbial community

2020 ◽  
Vol 48 (2) ◽  
pp. 399-409
Author(s):  
Baizhen Gao ◽  
Rushant Sabnis ◽  
Tommaso Costantini ◽  
Robert Jinkerson ◽  
Qing Sun
Keyword(s):  
Microbial Community ◽  
Microbial Communities ◽  
Environmental Remediation ◽  
Real Life ◽  
Design Principles ◽  
Microbial Interactions ◽  
Potential Applications ◽  
New Gene ◽  
Global Biogeochemical Cycles ◽  
Synthetic Microbial Communities

Microbial communities drive diverse processes that impact nearly everything on this planet, from global biogeochemical cycles to human health. Harnessing the power of these microorganisms could provide solutions to many of the challenges that face society. However, naturally occurring microbial communities are not optimized for anthropogenic use. An emerging area of research is focusing on engineering synthetic microbial communities to carry out predefined functions. Microbial community engineers are applying design principles like top-down and bottom-up approaches to create synthetic microbial communities having a myriad of real-life applications in health care, disease prevention, and environmental remediation. Multiple genetic engineering tools and delivery approaches can be used to ‘knock-in' new gene functions into microbial communities. A systematic study of the microbial interactions, community assembling principles, and engineering tools are necessary for us to understand the microbial community and to better utilize them. Continued analysis and effort are required to further the current and potential applications of synthetic microbial communities.

Top-Down Processing and Visual Reorientation Illusions in a Virtual Reality Environment

2004 ◽  
Vol 63 (3) ◽  
pp. 143-149 ◽  
Author(s):  
Fred W. Mast ◽  
Charles M. Oman
Keyword(s):  
Virtual Reality ◽  
Visual Processing ◽  
Line Length ◽  
Perceptual Cues ◽  
Virtual Reality Environment ◽  
Top Down ◽  
Test Conditions ◽  
The Subject ◽  
Processing Mechanisms

The role of top-down processing on the horizontal-vertical line length illusion was examined by means of an ambiguous room with dual visual verticals. In one of the test conditions, the subjects were cued to one of the two verticals and were instructed to cognitively reassign the apparent vertical to the cued orientation. When they have mentally adjusted their perception, two lines in a plus sign configuration appeared and the subjects had to evaluate which line was longer. The results showed that the line length appeared longer when it was aligned with the direction of the vertical currently perceived by the subject. This study provides a demonstration that top-down processing influences lower level visual processing mechanisms. In another test condition, the subjects had all perceptual cues available and the influence was even stronger.

Functional Anatomy of Intensity Aspects of Attention

2003 ◽  
Vol 14 (3) ◽  
pp. 181-190 ◽  
Author(s):  
Walter Sturm
Keyword(s):  
Right Hemisphere ◽  
Functional Anatomy ◽  
Fmri Data ◽  
Functional Networks ◽  
Top Down ◽  
Stimulus Modality ◽  
Spatial Orienting ◽  
Phasic Alertness ◽  
Co Activation ◽  
Attention System

Abstract: Behavioral and PET/fMRI-data are presented to delineate the functional networks subserving alertness, sustained attention, and vigilance as different aspects of attention intensity. The data suggest that a mostly right-hemisphere frontal, parietal, thalamic, and brainstem network plays an important role in the regulation of attention intensity, irrespective of stimulus modality. Under conditions of phasic alertness there is less right frontal activation reflecting a diminished need for top-down regulation with phasic extrinsic stimulation. Furthermore, a high overlap between the functional networks for alerting and spatial orienting of attention is demonstrated. These findings support the hypothesis of a co-activation of the posterior attention system involved in spatial orienting by the anterior alerting network. Possible implications of these findings for the therapy of neglect are proposed.

Auswirkungen eines Aufmerksamkeitstrainings auf die aphasische Symptomatik bei Schlaganfallpatienten

2011 ◽  
Vol 22 (1) ◽  
pp. 21-32 ◽  
Author(s):  
Julia Graf ◽  
Hartwig Kulke ◽  
Christa Sous-Kulke ◽  
Wilfried Schupp ◽  
Stefan Lautenbacher
Keyword(s):  
Top Down

Aufmerksamkeit kann als Kontrollsystem neuronaler Aktivität verstanden werden, welches Neuroplastizität top-down modulieren hilft. Bisher wurde selten versucht, durch deren gezielte Förderung Funktionswiederherstellungen nach Hirnschädigung zu begünstigen. In vorliegender Studie wurde dies am Beispiel der Aphasie erprobt. 15 Schlaganfallpatienten erhielten ein dreiwöchiges Training der selektiven Aufmerksamkeit mit den PC-Programmen CogniPlus und „Konzentration“ bei fünf Sitzungen pro Woche zusätzlich zur Standardtherapie, 13 weitere bildeten eine Kontrollgruppe ohne Aufmerksamkeitstraining. Zur Effektivitätskontrolle dienten zwei Versionen des Untertests Go/Nogo (Testbatterie zur Aufmerksamkeitsprüfung) und die Kurze Aphasieprüfung. Nach dem Training manifestierte sich zwischen den Untersuchungsgruppen kein Unterschied in Aufmerksamkeits- und Sprachfunktionen; das zusätzliche Aufmerksamkeitstraining war also wirkungslos. Allerdings zeigten Patienten mit deutlichen Aufmerksamkeitsverbesserungen tendenziell weniger Aphasie-Symptome, was die Hypothese aufmerksamkeitsvermittelter Plastizitätsmodulation nach Hirnschädigung partiell stützt.

Aufmerksamkeitswechsel und Konzentration: Von den Funktionen zum Mechanismus

2001 ◽  
Vol 209 (1) ◽  
pp. 34-53 ◽  
Author(s):  
Rainer Bösel
Keyword(s):  
Top Down ◽  
Eeg Alpha

Zusammenfassung. Aufmerksamkeit wird sowohl als Selektivität in der bewußter Verarbeitung oder auch als selektive neuronale Aktivierung verstanden. Die neuronalen Strukturen, die Objektdiskrimination ermöglichen, erlauben eine Interaktion von datengetriebenen und endogenen top-down Prozessen, die zu einer selektiven Bereitstellung von Verarbeitungs-Ressourcen führen. Zielgerichtetes Verhalten erfordert manchmal einen Wechsel in der Ressourcen-Bereitstellung und eine Konzentration von mentaler Aktivität. Aufmerksamkeitswechsel kann als ein zweiphasiger Prozeß verstanden werden, der aus einer breiten Mobilisierung von Gedächtnis-Ressourcen besteht (angezeigt durch EEG-Theta), gefolgt von einer re-organisierenden Einengung neuronaler Aktivität (angezeigt durch langsames EEG-Alpha). Dieser Beitrag unterstützt die Annahme, daß die Analyse des gekoppelten Wechselspiels aus Mobilisierung und Konzentration in bestimmten Teilen der posterioren und anterioren Rindenregionen ein Schlüssel für das Verständnis von Aufmerksamkeitswechsel sein könnte.

Sign in / Sign up

Export Citation Format

Share Document