Population Genetic Structure of Fagus japonica Revealed by Nuclear Microsatellite Markers

2009 ◽  
Vol 170 (6) ◽  
pp. 748-758 ◽  
Author(s):  
Koichi Hiraoka ◽  
Nobuhiro Tomaru
Keyword(s):  
Genetic Structure ◽  
Microsatellite Markers ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Nuclear Microsatellite ◽  
Fagus Japonica

scholarly journals Analysis of population genetic structure of Indian Anopheles culicifacies species A using microsatellite markers

2013 ◽  
Vol 6 (1) ◽  
pp. 166 ◽  
Author(s):  
Sujatha Sunil ◽  
Om P Singh ◽  
Nutan Nanda ◽  
Kamaraju Raghavendra ◽  
BP Niranjan Reddy ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Microsatellite Markers ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Anopheles Culicifacies

scholarly journals Characterization of Novel Genotyping-by-sequencing (GBS)-based Simple Sequence Repeats (SSRs) and Their Application for Population Genomics of Capoeta Aculeata (Valenciennes, 1844)

2021 ◽  
Author(s):  
Habibollah Gandomkar ◽  
Seyed Pezhman Hosseini Shekarabi ◽  
Hossein Ali Abdolhay ◽  
Sajad Nazari ◽  
Mehdi Shamsaei Mehrjan
Keyword(s):  
Genetic Structure ◽  
Microsatellite Markers ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Population Genomics ◽  
Freshwater Species ◽  
Zagros Basin ◽  
Next Generation Sequencing Technology ◽  
Ssr Loci ◽  
Polymorphic Microsatellite

Abstract The species Capoeta aculeata (Valenciennes, 1844) is one of the most important freshwater species endemic to Iran. However, the investigation of a population genetic structure of this species is limited by the low number of molecular markers currently described. In this study, we implemented next generation sequencing technology to identify polymorphic microsatellite markers and investigate the population genetic structure of C. aculeata sampled from three geographical sites in Iran. We sequenced 60 individuals from three populations occurring in the Zagros basin. We characterized and developed 36 novel polymorphic microsatellite markers and these loci were examined in 120 individuals from three populations occurring in the Zagros basin. The average number of alleles per locus varied from 1.7 to 16. (average = 7.89). The results showed that, the polymorphism information content (PCI) of these SSR loci varied from 0.254 to 0.888. The observed heterozygosity (Ho) per locus ranged from 0.170 to 0.881, while the expected heterozygosity (He) per locus was from 0.170 to 0.881. Among these SSR loci, 20 loci deviated significantly from the Hardy–Weinberg equilibrium after Bonferroni correction (p< 0.05). These microsatellite markers could provide a valuable tool for future population and conservation genetics studies of C. aculeate populations and other closely related species.

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