DNA Replication. Methods in Molecular Biology. Volume 7.Reed B. Wickner

1975 ◽  
Vol 50 (3) ◽  
pp. 309-309
Author(s):  
Waclaw Szybalski
2001 ◽  
Vol 114 (10) ◽  
pp. 1798-1799
Author(s):  
S.K. Evans ◽  
V. Lundblad

The Yeast Nucleus edited by P. Fantes and J. Beggs Oxford University Press (2000) 338 pages. ISBN 0–19-963772-5?32.50 Without question, numerous studies in yeast and mammals have revealed a striking commonality of underlying mechanisms that govern basic biological operations. Perhaps the most famous example from recent years has been the recognition that genes required for maintaining the yeast genome play a critical role in preventing cancer in humans. However, examining the molecular differences - the variations on a common theme, so to speak - can also be useful for understanding core biological processes. These ideas are the foundation for The Yeast Nucleus, a valuable contribution to Oxford University Press's ‘Frontiers in Molecular Biology’ series. The textbook compares and contrasts various nuclear processes in budding yeast (Saccharomyces cerevisiae) and fission yeast (Schizosaccharomyces pombe), pointing out the similarities - and differences - that make these two somewhat unrelated yeasts the dominant model systems for studying fundamental eukaryotic processes. Each of the nine chapters is an authoritative review written by experts in the field. The opening chapter surveys the technologies that have propelled efforts to elucidate the functions of the ~6000 predicted protein-encoding genes in S. cerevisiae; this chapter includes sections on bioinformatics, genome-wide transcription and proteome analysis. The next four chapters - covering DNA replication, the mitotic cell cycle, cell cycle checkpoints and nuclear division - form a well-integrated quartet that describes the complex molecular and genetic pathways governing faithful chromosome replication and segregation. The cell cycle chapter, in particular, is presented from a unique perspective: rather than focusing on the physiological changes that occur at each stage, it instead illustrates the molecular machines (i.e. the cyclin-dependent kinases) that propel the cell cycle. The fifth chapter provides a comprehensive discussion on RNA polymerase II transcription in S. cerevisiae that incorporates sections on general transcription factors, coactivators and repressors. It also includes a brief synopsis of the effects of chromatin on transcription, which creates a nice segue to the following chapter on the structure of chromatin at centromeres and telomeres. The final two chapters, on pre-mRNA splicing and nuclear transport of RNA and proteins, focus mainly on the mechanisms identified in budding yeast. The only obvious shortcoming with respect to the scope of this textbook is that it fails to include in-depth discussions of DNA repair and recombination. This publication has several attributes that make it an excellent reference source. First, it is a comprehensive review that weaves a great deal of supplementary information into each chapter. It not only is extensively referenced, but also frequently includes citations to reviews and to yeast database websites for further details. Second, the book is well written and readable. Each chapter is organized in a logical sequence - for example, the chapter on DNA replication starts with origin recognition and ends with Okazaki fragment processing. Furthermore, although the descriptions of genetic and molecular pathways are often encyclopedic, extensive summary tables and/or simple diagrams supplement the discussions and assist the reader in grasping the information. The value of such summary tables can be greatly appreciated when navigating through the maelstrom of mismatched S. cerevisiae and S. pombe CDC and RAD gene nomenclature. Lastly, there is an overall congruity that pulls together the topics of the separate chapters and relates them to one another. For instance, examples of genome-wide analyses are highlighted in several chapters to convey the practicality and usefulness of this approach, and the chapters on splicing and nuclear transport both include small sections that link these activities to other nuclear processes that have been discussed. It is important to note, however, that a complete understanding of many of the sections will require prior knowledge of fundamental genetic principles and molecular biology techniques; for this reason, the book may be better suited to the more advanced reader. The Yeast Nucleus is designed to stimulate thinking - not only about the similarities and differences between the budding and fission yeasts, but about whether comparable mechanisms might be used in other organisms as well. To achieve this goal, it goes beyond a comparative analysis of the two yeasts, and draws parallels with bacteriophage, viral and a variety of metazoan systems when applicable. The result is a well-integrated view that succeeds in providing a foundation for provoking thought about the unity of basic biological mechanisms. Moreover, each chapter concludes with an insightful look at the future direction of the field. In these regards, this publication will serve as a fabulous guidebook for experts as well as students.


2020 ◽  
Vol 82 (1) ◽  
pp. 49-51
Author(s):  
Ladislav Merta ◽  
Tomáš Pinkr ◽  
Vanda Janštová

Molecular biology topics tend to be abstract and hard to visualize, and consequently pupils form many misconceptions about genetics and molecular biology. We describe how to make a hands-on educational set that provides visual and tactile modeling of DNA replication, transcription, polymerase chain reaction (PCR), and random mutations so that students can examine these processes in detail. The set is inexpensive and easy to make, has been used successfully, and allows for modification to fit individual teachers' needs.


Biosemiotics ◽  
2021 ◽  
Author(s):  
Denis Noble

AbstractThe Modern Synthesis has dominated biology for 80 years. It was formulated in 1942, a decade before the major achievements of molecular biology, including the Double Helix and the Central Dogma. When first formulated in the 1950s these discoveries and concepts seemed initially to completely justify the central genetic assumptions of the Modern Synthesis. The Double Helix provided the basis for highly accurate DNA replication, while the Central Dogma was viewed as supporting the Weismann Barrier, so excluding the inheritance of acquired characteristics. This article examines the language of the Modern Synthesis and reveals that it is based on four important misinterpretations of what molecular biology had shown, so forming the basis of the four Illusions: 1. Natural Selection; 2. The Weismann Barrier; 3. The Rejection of Darwin’s Gemmules; 4. The Central Dogma. A multi-level organisation view of biology avoids these illusions through the principle of biological relativity. Molecular biology does not therefore confirm the assumptions of the Modern Synthesis.


Author(s):  
Cecil E. Hall

The visualization of organic macromolecules such as proteins, nucleic acids, viruses and virus components has reached its high degree of effectiveness owing to refinements and reliability of instruments and to the invention of methods for enhancing the structure of these materials within the electron image. The latter techniques have been most important because what can be seen depends upon the molecular and atomic character of the object as modified which is rarely evident in the pristine material. Structure may thus be displayed by the arts of positive and negative staining, shadow casting, replication and other techniques. Enhancement of contrast, which delineates bounds of isolated macromolecules has been effected progressively over the years as illustrated in Figs. 1, 2, 3 and 4 by these methods. We now look to the future wondering what other visions are waiting to be seen. The instrument designers will need to exact from the arts of fabrication the performance that theory has prescribed as well as methods for phase and interference contrast with explorations of the potentialities of very high and very low voltages. Chemistry must play an increasingly important part in future progress by providing specific stain molecules of high visibility, substrates of vanishing “noise” level and means for preservation of molecular structures that usually exist in a solvated condition.


Author(s):  
Dhruba K. Chattoraj ◽  
Ross B. Inman

Electron microscopy of replicating intermediates has been quite useful in understanding the mechanism of DNA replication in DNA molecules of bacteriophage, mitochondria and plasmids. The use of partial denaturation mapping has made the tool more powerful by providing a frame of reference by which the position of the replicating forks in bacteriophage DNA can be determined on the circular replicating molecules. This provided an easy means to find the origin and direction of replication in λ and P2 phage DNA molecules. DNA of temperate E. coli phage 186 was found to have an unique denaturation map and encouraged us to look into its mode of replication.


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