scholarly journals ESCRT-III is required for scissioning new peroxisomes from the endoplasmic reticulum

2018 ◽  
Vol 217 (6) ◽  
pp. 2087-2102 ◽  
Author(s):  
Fred D. Mast ◽  
Thurston Herricks ◽  
Kathleen M. Strehler ◽  
Leslie R. Miller ◽  
Ramsey A. Saleem ◽  
...  
Keyword(s):  
Endoplasmic Reticulum ◽  
De Novo ◽  
Dynamic Control ◽  
Eukaryotic Cell ◽  
Peroxisome Proliferation ◽  
Peroxisome Biogenesis ◽  
Endosomal Sorting ◽  
Internal Membrane ◽  
A Cell

Dynamic control of peroxisome proliferation is integral to the peroxisome’s many functions. The endoplasmic reticulum (ER) serves as a source of preperoxisomal vesicles (PPVs) that mature into peroxisomes during de novo peroxisome biogenesis and support growth and division of existing peroxisomes. However, the mechanism of PPV formation and release from the ER remains poorly understood. In this study, we show that endosomal sorting complexes required for transport (ESCRT)-III are required to release PPVs budding from the ER into the cytosol. Absence of ESCRT-III proteins impedes de novo peroxisome formation and results in an aberrant peroxisome population in vivo. Using a cell-free PPV budding assay, we show that ESCRT-III proteins Vps20 and Snf7 are necessary to release PPVs from the ER. ESCRT-III is therefore a positive effector of membrane scission for vesicles budding both away from and toward the cytosol. These findings have important implications for the evolutionary timing of emergence of peroxisomes and the rest of the internal membrane architecture of the eukaryotic cell.

scholarly journals ESCRT-III acts in scissioning new peroxisomes from the ER

2017 ◽  
Author(s):  
Fred D. Mast ◽  
Thurston Herricks ◽  
Kathleen M. Strehler ◽  
Leslie R. Miller ◽  
Ramsey A. Saleem ◽  
...  
Keyword(s):  
De Novo ◽  
Genetic Disorders ◽  
Dynamic Control ◽  
Eukaryotic Cell ◽  
Peroxisome Biogenesis ◽  
Endosomal Sorting ◽  
Obesity And Diabetes ◽  
A Cell ◽  
And Function

AbstractDynamic control of peroxisome proliferation is integral to the peroxisome’s many functions. A breakdown in the ability of cells to form peroxisomes is linked to many human health issues, including defense against infectious agents, cancer, aging, heart disease, obesity and diabetes, and forms the basis of a spectrum of peroxisomal genetic disorders that cause severe neuropathologies. The ER serves as a source for preperoxisomal vesicles (PPVs) that mature into peroxisomes during de novo peroxisome biogenesis and to support growth and division of existing peroxisomes. However, the mechanism of PPV formation and release from the ER remains poorly understood. Here we show that the evolutionarily ancient endosomal sorting complexes required for transport (ESCRT)-III are peroxisome biogenesis factors that function to cleave PPVs budding from the ER into the cytosol. Using comprehensive morphological and genetic assays of peroxisome formation and function we find that absence of ESCRT-III proteins impedes de novo peroxisome formation and results in an aberrant peroxisome population in vivo. Using a cell-free PPV budding assay we show that ESCRT-III proteins Vps20 and Snf7 are required to release PPVs from the ER. ESCRT-III is therefore a positive effector of membrane scission for vesicles budding both away from and towards the cytosol, a finding that has important implications for the evolutionary timing of emergence of peroxisomes and the rest of the internal membrane architecture of the eukaryotic cell.

scholarly journals Targeted Esterase induced Dye loading supports Calcium Imaging in Eukaryotic Cell-Free Systems

2020 ◽  
Author(s):  
Priyavathi Dhandapani ◽  
Srujan Kumar Dondapati ◽  
Anne Zemella ◽  
Dennis Bräuer ◽  
Doreen Anja Wüstenhagen ◽  
...  
Keyword(s):  
Endoplasmic Reticulum ◽  
Calcium Imaging ◽  
Eukaryotic Cell ◽  
Translation System ◽  
Acetoxymethyl Ester ◽  
Imaging Tool ◽  
Dye Loading ◽  
Ester Moiety ◽  
A Cell ◽  
Model Channel

ABSTRACTCalcium imaging is an important functional tool for addressing ion channels, transporters and pumps for drug screening in living cells. Depicted eukaryotic cell-free systems utilize microsomes, derived from endoplasmic reticulum to incorporate the synthesized membrane proteins. Absence or inadequate amount of carboxylesterase in the endoplasmic reticulum of eukaryotic cells, which is necessary to cleave the acetoxymethyl ester moiety of the chemical calcium indicators, advocates the hindrance to perform calcium imaging in microsomes. In this work, we try to overcome this drawback and adapt the cell-based calcium imaging principle to a cell-free protein synthesis platform. Carboxylesterase synthesized in a Spodoptera frugiperda Sf21 lysate translation system is established as a viable calcium imaging tool and hTRPV1 is used as a model channel protein to demonstrate the realization of this concept.

Development and in vivo evaluation of fused benzazole analogs of anti-melanoma agent HA15

2021 ◽  
Author(s):  
Antoine Millet ◽  
Mauro Safir Filho ◽  
Nedra Hamouda-Tekaya ◽  
Elisa Cavazza ◽  
Patricia Abbe ◽  
...  
Keyword(s):  
Endoplasmic Reticulum ◽  
Endoplasmic Reticulum Stress ◽  
Mode Of Action ◽  
Tumor Growth Inhibition ◽  
In Vivo Evaluation ◽  
Relationship Analysis ◽  
Structure Activity ◽  
New Directions ◽  
A Cell

Background: In line with our recent discovery of an efficient anticancer thiazolebenzenesulfonamide framework HA15 (1) based on a remarkable endoplasmic reticulum stress inducement mode of action, we report herein a series of innovative constrained HA15 analogs, featuring four types of bicylic derivatives. Results: The structure–activity relationship analysis, using a cell line assay, led us to identify a novel version of HA15: a new benzothiazole derivative (10b) exhibiting important anti-melanoma effect against sensitive and resistant melanoma cells. Meanwhile, compound 10b induced a significant tumor growth inhibition in vivo with no apparent signs of toxicity. Conclusion: These results consistently open new directions to improve and develop more powerful anticancer therapeutics harboring this type of fused framework.

scholarly journals Cholera Toxin Is Exported from Microsomes by the Sec61p Complex

2000 ◽  
Vol 148 (6) ◽  
pp. 1203-1212 ◽  
Author(s):  
Anton Schmitz ◽  
Helga Herrgen ◽  
Alexandra Winkeler ◽  
Volker Herzog
Keyword(s):  
Endoplasmic Reticulum ◽  
Cholera Toxin ◽  
De Novo ◽  
Bacterial Toxins ◽  
Protein Export ◽  
In Vitro Translation ◽  
Unknown Mechanism ◽  
A Cell ◽  
Er Export

After endocytosis cholera toxin is transported to the endoplasmic reticulum (ER), from where its A1 subunit (CTA1) is assumed to be transferred to the cytosol by an as-yet unknown mechanism. Here, export of CTA1 from the ER to the cytosol was investigated in a cell-free assay using either microsomes loaded with CTA1 by in vitro translation or reconstituted microsomes containing CTA1 purified from V. cholerae. Export of CTA1 from the microsomes was time- and adenosine triphosphate–dependent and required lumenal ER proteins. By coimmunoprecipitation CTA1 was shown to be associated during export with the Sec61p complex, which mediates import of proteins into the ER. Export of CTA1 was inhibited when the Sec61p complexes were blocked by nascent polypeptides arrested during import, demonstrating that the export of CTA1 depended on translocation-competent Sec61p complexes. Export of CTA1 from the reconstituted microsomes indicated the de novo insertion of the toxin into the Sec61p complex from the lumenal side. Our results suggest that Sec61p complex–mediated protein export from the ER is not restricted to ER-associated protein degradation but is also used by bacterial toxins, enabling their entry into the cytosol of the target cell.

scholarly journals MED1 is a lipogenesis coactivator required for postnatal adipose expansion

2020 ◽  
Author(s):  
Younghoon Jang ◽  
Young-Kwon Park ◽  
Ji-Eun Lee ◽  
Nhien Tran ◽  
Oksana Gavrilova ◽  
...  
Keyword(s):  
Transcription Factors ◽  
De Novo ◽  
Late Phase ◽  
High Fat ◽  
Maternal Milk ◽  
A Cell ◽  
Coactivator Complex

MED1 often serves as a surrogate of the general transcription coactivator complex Mediator for identifying active enhancers. MED1 is required for phenotypic conversion of fibroblasts to adipocytes in vitro but its role in adipose development and expansion in vivo has not been reported. Here we report that MED1 is dispensable for adipose development in mice. Instead, MED1 is required for postnatal adipose expansion and the induction of de novo lipogenesis (DNL) genes after pups switch diet from high-fat maternal milk to carbohydrate-based chow. During adipogenesis, MED1 is dispensable for induction of lineage-determining transcription factors (TFs) PPARγ and C/EBPα but is required for lipid accumulation in the late phase of differentiation. Mechanistically, MED1 controls the induction of DNL genes by facilitating lipogenic TF ChREBP-dependent recruitment of Mediator to active enhancers. Together, our findings identify a cell- and gene-specific regulatory role of MED1 as a lipogenesis coactivator required for postnatal adipose expansion.

scholarly journals Reconstitution of transport of vesicular stomatitis virus G protein from the endoplasmic reticulum to the Golgi complex using a cell-free system.

1987 ◽  
Vol 104 (3) ◽  
pp. 749-760 ◽  
Author(s):  
W E Balch ◽  
K R Wagner ◽  
D S Keller
Keyword(s):  
Endoplasmic Reticulum ◽  
G Protein ◽  
Vesicular Stomatitis Virus ◽  
Golgi Complex ◽  
Free System ◽  
A Cell ◽  
Vesicular Stomatitis ◽  
High Mannose

Transport of the vesicular stomatitis virus-encoded glycoprotein (G protein) between the endoplasmic reticulum (ER) and the cis Golgi compartment has been reconstituted in a cell-free system. Transfer is measured by the processing of the high mannose (man GlcNAc2) ER form of G protein to the man5GlcNAc5 form by the cis Golgi enzyme alpha-mannosidase I. G protein is rapidly and efficiently transported to the Golgi complex by a process resembling that observed in vivo. G protein is trimmed from the high mannose form to the man5GlcNAc2 form without the appearance of the intermediate man GlcNAc2 oligosaccharide species, as is observed in vivo. G protein is found in a sealed membrane-bound compartment before and after incubation. Processing in vitro is sensitive to detergent, and the Golgi alpha-mannosidase I inhibitor 1-deoxymannorjirimycin. Transport between the ER and Golgi complex in vitro requires the addition of a high speed supernatant (cytosol) of cell homogenates, and requires energy in the form of ATP. Efficient reconstitution of export of protein from the ER requires the preparation of homogenates from mitotic cell populations in which the nuclear envelope, ER, and Golgi compartments have been physiologically disassembled before cell homogenization. These results suggest that the high efficiency of transport observed here may require reassembly of functional organelles in vitro.

scholarly journals Peroxisome Biogenesis Occurs in an Unsynchronized Manner in Close Association with the Endoplasmic Reticulum in Temperature-sensitiveYarrowia lipolyticaPex3p Mutants

2003 ◽  
Vol 14 (3) ◽  
pp. 939-957 ◽  
Author(s):  
Roger A. Bascom ◽  
Honey Chan ◽  
Richard A. Rachubinski
Keyword(s):  
Endoplasmic Reticulum ◽  
Matrix Protein ◽  
De Novo ◽  
Close Association ◽  
Integral Membrane Protein ◽  
Matrix Proteins ◽  
Temperature Sensitive ◽  
Tubular Structures ◽  
Peroxisome Biogenesis

Pex3p is a peroxisomal integral membrane protein required early in peroxisome biogenesis, and Pex3p-deficient cells lack identifiable peroxisomes. Two temperature-sensitive pex3 mutant strains of the yeast Yarrowia lipolytica were made to investigate the role of Pex3p in the early stages of peroxisome biogenesis. In glucose medium at 16°C, these mutants underwent de novo peroxisome biogenesis and exhibited early matrix protein sequestration into peroxisome-like structures found at the endoplasmic reticulum-rich periphery of cells or sometimes associated with nuclei. The de novo peroxisome biogenesis seemed unsynchronized, with peroxisomes occurring at different stages of development both within cells and between cells. Cells with peripheral nascent peroxisomes and cells with structures morphologically distinct from peroxisomes, such as semi/circular tubular structures that immunostained with antibodies to peroxisomal matrix proteins and to the endoplasmic reticulum-resident protein Kar2p, and that surrounded lipid droplets, were observed during up-regulation of peroxisome biogenesis in cells incubated in oleic acid medium at 16°C. These structures were not detected in wild-type or Pex3p-deficient cells. Their role in peroxisome biogenesis remains unclear. Targeting of peroxisomal matrix proteins to these structures suggests that Pex3p directly or indirectly sequesters components of the peroxisome biogenesis machinery. Such a role is consistent with Pex3p overexpression producing cells with fewer, larger, and clustered peroxisomes.

scholarly journals Bi-allelic variants in CHKA cause a neurodevelopmental disorder with epilepsy and microcephaly

2021 ◽  
Author(s):  
Chiara Kloeckner ◽  
J. Pedro Fernandez Murray ◽  
Mahtab Tavasoli ◽  
Heinrich Sticht ◽  
Gisela Stoltenburg-Didinger ◽  
...  
Keyword(s):  
Autosomal Recessive ◽  
De Novo ◽  
Neurodevelopmental Disorder ◽  
Recessive Gene ◽  
Eukaryotic Cell ◽  
Global Developmental Delay ◽  
Allelic Variants ◽  
Kennedy Pathway ◽  
Significant Impairment ◽  
A Cell

The Kennedy pathways catalyze the de novo synthesis of phosphatidylcholine and phosphatidylethanolamine, the most abundant components of eukaryotic cell membranes. In recent years, these pathways have moved into clinical focus since four out of ten genes involved have been associated with a range of autosomal recessive rare diseases such as a neurodevelopmental disorder with muscular dystrophy (CHKB), bone abnormalities and cone-rod dystrophy (PCYT1A), and spastic paraplegia (PCYT2, SELENOI). We identified six individuals from five families with bi-allelic variants in CHKA presenting with severe global developmental delay, epilepsy, movement disorders, and microcephaly. Using structural molecular modeling and functional testing of the variants in a in a cell-based S. cerevisiae model, we determined that these variants reduce the enzymatic activity of CHKA and confer a significant impairment of the first enzymatic step of the Kennedy pathway. In summary, we present CHKA as a novel autosomal recessive gene for a neurodevelopmental disorder with epilepsy and microcephaly.

scholarly journals lncRNA requirements for mouse acute myeloid leukemia and normal differentiation

eLife ◽  
2017 ◽  
Vol 6 ◽  
Author(s):  
M Joaquina Delás ◽  
Leah R Sabin ◽  
Egor Dolzhenko ◽  
Simon RV Knott ◽  
Ester Munera Maravilla ◽  
...  
Keyword(s):  
Acute Myeloid Leukemia ◽  
Myeloid Leukemia ◽  
De Novo ◽  
Protein Coding ◽  
Myc Oncogene ◽  
Transcriptional Dynamics ◽  
A Cell ◽  
Normal Differentiation ◽  
Acute Myeloid

A substantial fraction of the genome is transcribed in a cell-type-specific manner, producing long non-coding RNAs (lncRNAs), rather than protein-coding transcripts. Here, we systematically characterize transcriptional dynamics during hematopoiesis and in hematological malignancies. Our analysis of annotated and de novo assembled lncRNAs showed many are regulated during differentiation and mis-regulated in disease. We assessed lncRNA function via an in vivo RNAi screen in a model of acute myeloid leukemia. This identified several lncRNAs essential for leukemia maintenance, and found that a number act by promoting leukemia stem cell signatures. Leukemia blasts show a myeloid differentiation phenotype when these lncRNAs were depleted, and our data indicates that this effect is mediated via effects on the MYC oncogene. Bone marrow reconstitutions showed that a lncRNA expressed across all progenitors was required for the myeloid lineage, whereas the other leukemia-induced lncRNAs were dispensable in the normal setting.

scholarly journals A Multistep, ATP-dependent Pathway for Assembly of Human Immunodeficiency Virus Capsids in a Cell-free System

1997 ◽  
Vol 136 (3) ◽  
pp. 567-581 ◽  
Author(s):  
Jaisri R. Lingappa ◽  
Rebecca L. Hill ◽  
Mei Lie Wong ◽  
Ramanujan S. Hegde
Keyword(s):  
Human Immunodeficiency Virus ◽  
De Novo ◽  
Atp Depletion ◽  
Assembly Process ◽  
Free System ◽  
Cell Free System ◽  
Virus Capsids ◽  
Immunodeficiency Virus ◽  
A Cell

To understand the mechanism by which human immunodeficiency virus type 1 (HIV) capsids are formed, we have reconstituted the assembly of immature HIV capsids de novo in a cell-free system. Capsid authenticity is established by multiple biochemical and morphologic criteria. Known features of the assembly process are closely reproduced, indicating the fidelity of the cell-free reaction. Assembly is separated into co- and posttranslational phases, and three independent posttranslational requirements are demonstrated: (a) ATP, (b) a detergent-sensitive host factor, and (c) a detergent-insensitive host subcellular fraction that can be depleted and reconstituted. Assembly appears to proceed by way of multiple intermediates whose conversion to completed capsids can be blocked by either ATP depletion or treatment with nondenaturing detergent. Specific subsets of these intermediates accumulate upon expression of various assembly-defective Gag mutants in the cell-free system, suggesting that each mutant is blocked at a particular step in assembly. Furthermore, the accumulation of complexes of similar sizes in cells expressing the corresponding mutants suggests that comparable intermediates may exist in vivo. From these data, we propose a multi-step pathway for the biogenesis of HIV capsids, in which the assembly process can be disrupted at a number of discrete points.

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