scholarly journals The ATR-mediated S phase checkpoint prevents rereplication in mammalian cells when licensing control is disrupted

2007 ◽  
Vol 179 (4) ◽  
pp. 643-657 ◽  
Author(s):  
Enbo Liu ◽  
Alan Yueh-Luen Lee ◽  
Takuya Chiba ◽  
Erin Olson ◽  
Peiqing Sun ◽  
...  
Keyword(s):  
Mammalian Cells ◽  
Molecular Mechanisms ◽  
Protein A ◽  
S Phase ◽  
Minichromosome Maintenance ◽  
Checkpoint Activation ◽  
Checkpoint Pathway ◽  
Surveillance Mechanism ◽  
Dna Rereplication ◽  
S Phase Checkpoint

DNA replication in eukaryotic cells is tightly controlled by a licensing mechanism, ensuring that each origin fires once and only once per cell cycle. We demonstrate that the ataxia telangiectasia and Rad3 related (ATR)–mediated S phase checkpoint acts as a surveillance mechanism to prevent rereplication. Thus, disruption of licensing control will not induce significant rereplication in mammalian cells when the ATR checkpoint is intact. We also demonstrate that single-stranded DNA (ssDNA) is the initial signal that activates the checkpoint when licensing control is compromised in mammalian cells. We demonstrate that uncontrolled DNA unwinding by minichromosome maintenance proteins upon Cdt1 overexpression is an important mechanism that leads to ssDNA accumulation and checkpoint activation. Furthermore, we show that replication protein A 2 and retinoblastoma protein are both downstream targets for ATR that are important for the inhibition of DNA rereplication. We reveal the molecular mechanisms by which the ATR-mediated S phase checkpoint pathway prevents DNA rereplication and thus significantly improve our understanding of how rereplication is prevented in mammalian cells.

scholarly journals Intra-S-Phase Checkpoint Activation by Direct CDK2 Inhibition

2004 ◽  
Vol 24 (14) ◽  
pp. 6268-6277 ◽  
Author(s):  
Yonghong Zhu ◽  
Carmen Alvarez ◽  
Ronald Doll ◽  
Hirokazu Kurata ◽  
Xiao Min Schebye ◽  
...  
Keyword(s):  
Genomic Stability ◽  
S Phase ◽  
Cell Cycle Checkpoints ◽  
Minichromosome Maintenance ◽  
Checkpoint Activation ◽  
Cdk2 Activity ◽  
A Cell ◽  
Dependent Pathway ◽  
Number Of Cells ◽  
S Phase Checkpoint

ABSTRACT To ensure proper progression through a cell cycle, checkpoints have evolved to play a surveillance role in maintaining genomic integrity. In this study, we demonstrate that loss of CDK2 activity activates an intra-S-phase checkpoint. CDK2 inhibition triggers a p53-p21 response via ATM- and ATR-dependent p53 phosphorylation at serine 15. Phosphorylation of other ATM and ATR downstream substrates, such as H2AX, NBS1, CHK1, and CHK2 is also increased. We show that during S phase when CDK2 activity is inhibited, there is an unexpected loading of the minichromosome maintenance complex onto chromatin. In addition, there is an increased number of cells with more than 4N DNA content, detected in the absence of p53, suggesting that rereplication can occur as a result of CDK2 disruption. Our findings identify an important role for CDK2 in the maintenance of genomic stability, acting via an ATM- and ATR-dependent pathway.

scholarly journals The Mre11 Complex Mediates the S-Phase Checkpoint through an Interaction with Replication Protein A

2007 ◽  
Vol 27 (17) ◽  
pp. 6053-6067 ◽  
Author(s):  
Erin Olson ◽  
Christian J. Nievera ◽  
Enbo Liu ◽  
Alan Yueh-Luen Lee ◽  
Longchuan Chen ◽  
...  
Keyword(s):  
Dna Replication ◽  
Mammalian Cells ◽  
Protein A ◽  
Replication Protein A ◽  
S Phase ◽  
Replication Initiation ◽  
Replication Protein ◽  
Direct Role ◽  
Origin Firing ◽  
S Phase Checkpoint

ABSTRACT The Mre11/Rad50/Nbs1 complex (MRN) plays an essential role in the S-phase checkpoint. Cells derived from patients with Nijmegen breakage syndrome and ataxia telangiectasia-like disorder undergo radioresistant DNA synthesis (RDS), failing to suppress DNA replication in response to ionizing radiation (IR). How MRN affects DNA replication to control the S-phase checkpoint, however, remains unclear. We demonstrate that MRN directly interacts with replication protein A (RPA) in unperturbed cells and that the interaction is regulated by cyclin-dependent kinases. We also show that this interaction is needed for MRN to correctly localize to replication centers. Abolishing the interaction of Mre11 with RPA leads to pronounced RDS without affecting phosphorylation of Nbs1 or SMC1 following IR. Moreover, MRN is recruited to sites at or adjacent to replication origins by RPA and acts there to inhibit new origin firing upon IR. These studies suggest a direct role of MRN at origin-proximal sites to control DNA replication initiation in response to DNA damage, thereby providing an important mechanism underlying the intra-S-phase checkpoint in mammalian cells.

scholarly journals Divergent S Phase Checkpoint Activation Arising from Prereplicative Complex Deficiency Controls Cell Survival

2009 ◽  
Vol 20 (17) ◽  
pp. 3953-3964 ◽  
Author(s):  
Eric Lau ◽  
Gary G. Chiang ◽  
Robert T. Abraham ◽  
Wei Jiang
Keyword(s):  
Dna Replication ◽  
Cancer Cells ◽  
S Phase ◽  
Checkpoint Control ◽  
Multiple Cancer ◽  
Checkpoint Activation ◽  
Diploid Cells ◽  
Prereplicative Complex ◽  
Stress Damage ◽  
S Phase Checkpoint

The DNA replication machinery plays additional roles in S phase checkpoint control, although the identities of the replication proteins involved in checkpoint activation remain elusive. Here, we report that depletion of the prereplicative complex (pre-RC) protein Cdc6 causes human nontransformed diploid cells to arrest nonlethally in G1-G1/S and S phase, whereas multiple cancer cell lines undergo G1-G1/S arrest and cell death. These divergent phenotypes are dependent on the activation, or lack thereof, of an ataxia telangiectasia and Rad3-related (ATR)-dependent S phase checkpoint that inhibits replication fork progression. Although pre-RC deficiency induces chromatin structural alterations in both nontransformed and cancer cells that normally lead to ATR checkpoint activation, the sensor mechanisms in cancer cells seem to be compromised such that higher levels of DNA replication stress/damage are required to trigger checkpoint response. Our results suggest that therapy-induced disruption of pre-RC function might exert selective cytotoxic effects on tumor cells in human patients.

scholarly journals Excess Mcm2–7 license dormant origins of replication that can be used under conditions of replicative stress

2006 ◽  
Vol 173 (5) ◽  
pp. 673-683 ◽  
Author(s):  
Anna M. Woodward ◽  
Thomas Göhler ◽  
M. Gloria Luciani ◽  
Maren Oehlmann ◽  
Xinquan Ge ◽  
...  
Keyword(s):  
Complete Genome ◽  
S Phase ◽  
Genome Replication ◽  
Replication Origins ◽  
Observable Effect ◽  
Minichromosome Maintenance ◽  
Replicative Stress ◽  
Origins Of Replication ◽  
Checkpoint Pathway ◽  
Egg Extracts

In late mitosis and early G1, replication origins are licensed for subsequent use by loading complexes of the minichromosome maintenance proteins 2–7 (Mcm2–7). The number of Mcm2–7 complexes loaded onto DNA greatly exceeds the number of replication origins used during S phase, but the function of the excess Mcm2–7 is unknown. Using Xenopus laevis egg extracts, we show that these excess Mcm2–7 complexes license additional dormant origins that do not fire during unperturbed S phases because of suppression by a caffeine-sensitive checkpoint pathway. Use of these additional origins can allow complete genome replication in the presence of replication inhibitors. These results suggest that metazoan replication origins are actually comprised of several candidate origins, most of which normally remain dormant unless cells experience replicative stress. Consistent with this model, using Caenorhabditis elegans, we show that partial RNAi-based knockdown of MCMs that has no observable effect under normal conditions causes lethality upon treatment with low, otherwise nontoxic, levels of the replication inhibitor hydroxyurea.

scholarly journals A Role for Saccharomyces cerevisiae Chk1p in the Response to Replication Blocks

2004 ◽  
Vol 15 (9) ◽  
pp. 4051-4063 ◽  
Author(s):  
Kaila L. Schollaert ◽  
Julie M. Poisson ◽  
Jennifer S. Searle ◽  
Jennifer A. Schwanekamp ◽  
Craig R. Tomlinson ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Dna Damage ◽  
Transcriptional Response ◽  
S Phase ◽  
Yeast Cells ◽  
Dna Damage Checkpoint ◽  
Checkpoint Kinases ◽  
Checkpoint Pathway ◽  
Dna Replication And Repair ◽  
S Phase Checkpoint

Replication blocks and DNA damage incurred during S phase activate the S-phase and intra-S-phase checkpoint responses, respectively, regulated by the Atrp and Chk1p checkpoint kinases in metazoans. In Saccharomyces cerevisiae, these checkpoints are regulated by the Atrp homologue Mec1p and the kinase Rad53p. A conserved role of these checkpoints is to block mitotic progression until DNA replication and repair are completed. In S. cerevisiae, these checkpoints include a transcriptional response regulated by the kinase Dun1p; however, dun1Δ cells are proficient for the S-phase-checkpoint-induced anaphase block. Yeast Chk1p kinase regulates the metaphase-to-anaphase transition in the DNA-damage checkpoint pathway via securin (Pds1p) phosphorylation. However, like Dun1p, yeast Chk1p is not required for the S-phase-checkpoint-induced anaphase block. Here we report that Chk1p has a role in the intra-S-phase checkpoint activated when yeast cells replicate their DNA in the presence of low concentrations of hydroxyurea (HU). Chk1p was modified and Pds1p was transiently phosphorylated in this response. Cells lacking Dun1p were dependent on Chk1p for survival in HU, and chk1Δ dun1Δ cells were defective in the recovery from replication interference caused by transient HU exposure. These studies establish a relationship between the S-phase and DNA-damage checkpoint pathways in S. cerevisiae and suggest that at least in some genetic backgrounds, the Chk1p/securin pathway is required for the recovery from stalled or collapsed replication forks.

scholarly journals The histone methyltransferase SET8 is required for S-phase progression

2007 ◽  
Vol 179 (7) ◽  
pp. 1337-1345 ◽  
Author(s):  
Stine Jørgensen ◽  
Ingegerd Elvers ◽  
Morten Beck Trelle ◽  
Tobias Menzel ◽  
Morten Eskildsen ◽  
...  
Keyword(s):  
Cell Proliferation ◽  
Dna Damage ◽  
Posttranslational Modifications ◽  
Mammalian Cells ◽  
Protein A ◽  
Strand Break ◽  
Histone Methyltransferase ◽  
S Phase ◽  
Nuclear Antigen ◽  
And Function

Chromatin structure and function is influenced by histone posttranslational modifications. SET8 (also known as PR-Set7 and SETD8) is a histone methyltransferase that monomethylates histonfe H4-K20. However, a function for SET8 in mammalian cell proliferation has not been determined. We show that small interfering RNA inhibition of SET8 expression leads to decreased cell proliferation and accumulation of cells in S phase. This is accompanied by DNA double-strand break (DSB) induction and recruitment of the DNA repair proteins replication protein A, Rad51, and 53BP1 to damaged regions. SET8 depletion causes DNA damage specifically during replication, which induces a Chk1-mediated S-phase checkpoint. Furthermore, we find that SET8 interacts with proliferating cell nuclear antigen through a conserved motif, and SET8 is required for DNA replication fork progression. Finally, codepletion of Rad51, an important homologous recombination repair protein, abrogates the DNA damage after SET8 depletion. Overall, we show that SET8 is essential for genomic stability in mammalian cells and that decreased expression of SET8 results in DNA damage and Chk1-dependent S-phase arrest.

Phosphorylation of replication protein A by S-phase checkpoint kinases

DNA Repair ◽  
2006 ◽  
Vol 5 (3) ◽  
pp. 369-380 ◽  
Author(s):  
Jen-Sing Liu ◽  
Shu-Ru Kuo ◽  
Thomas Melendy
Keyword(s):  
Protein A ◽  
Replication Protein A ◽  
S Phase ◽  
Replication Protein ◽  
Checkpoint Kinases ◽  
S Phase Checkpoint

scholarly journals Recovery from DNA replicational stress is the essential function of the S-phase checkpoint pathway

1998 ◽  
Vol 12 (18) ◽  
pp. 2956-2970 ◽  
Author(s):  
B. A. Desany ◽  
A. A. Alcasabas ◽  
J. B. Bachant ◽  
S. J. Elledge
Keyword(s):  
S Phase ◽  
Checkpoint Pathway ◽  
Essential Function ◽  
S Phase Checkpoint

scholarly journals S-Phase Checkpoint Pathways Stimulate the Mobility of the Retrovirus-Like Transposon Ty1

2007 ◽  
Vol 27 (24) ◽  
pp. 8874-8885 ◽  
Author(s):  
M. Joan Curcio ◽  
Alison E. Kenny ◽  
Sharon Moore ◽  
David J. Garfinkel ◽  
Matthew Weintraub ◽  
...  
Keyword(s):  
Dna Damage ◽  
Reverse Transcriptase ◽  
Reverse Transcriptase Activity ◽  
S Phase ◽  
Dna Lesions ◽  
Restriction Factors ◽  
Transcriptase Activity ◽  
Checkpoint Pathway ◽  
Ty1 Mobility ◽  
S Phase Checkpoint

ABSTRACT The mobility of the Ty1 retrotransposon in the yeast Saccharomyces cerevisiae is restricted by a large collection of proteins that preserve the integrity of the genome during replication. Several of these repressors of Ty1 transposition (Rtt)/genome caretakers are orthologs of mammalian retroviral restriction factors. In rtt/genome caretaker mutants, levels of Ty1 cDNA and mobility are increased; however, the mechanisms underlying Ty1 hypermobility in most rtt mutants are poorly characterized. Here, we show that either or both of two S-phase checkpoint pathways, the replication stress pathway and the DNA damage pathway, partially or strongly stimulate Ty1 mobility in 19 rtt/genome caretaker mutants. In contrast, neither checkpoint pathway is required for Ty1 hypermobility in two rtt mutants that are competent for genome maintenance. In rtt101Δ mutants, hypermobility is stimulated through the DNA damage pathway components Rad9, Rad24, Mec1, Rad53, and Dun1 but not Chk1. We provide evidence that Ty1 cDNA is not the direct target of the DNA damage pathway in rtt101Δ mutants; instead, levels of Ty1 integrase and reverse transcriptase proteins, as well as reverse transcriptase activity, are significantly elevated. We propose that DNA lesions created in the absence of Rtt/genome caretakers trigger S-phase checkpoint pathways to stimulate Ty1 reverse transcriptase activity.

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