scholarly journals How the headpiece hinge angle is opened: new insights into the dynamics of integrin activation

2006 ◽  
Vol 175 (2) ◽  
pp. 349-360 ◽  
Author(s):  
Eileen Puklin-Faucher ◽  
Mu Gao ◽  
Klaus Schulten ◽  
Viola Vogel

How the integrin head transitions to the high-affinity conformation is debated. Although experiments link activation with the opening of the hinge angle between the βA and hybrid domains in the ligand-binding headpiece, this hinge is closed in the liganded αvβ3 integrin crystal structure. We replaced the RGD peptide ligand of this structure with the 10th type III fibronectin module (FnIII10) and discovered through molecular dynamics (MD) equilibrations that when the conformational constraints of the leg domains are lifted, the βA/hybrid hinge opens spontaneously. Together with additional equilibrations on the same nanosecond timescale in which small structural variations impeded hinge-angle opening, these simulations allowed us to identify the allosteric pathway along which ligand-induced strain propagates via elastic distortions of the α1 helix to the βA/hybrid domain hinge. Finally, we show with steered MD how force accelerates hinge-angle opening along the same allosteric pathway. Together with available experimental data, these predictions provide a novel framework for understanding integrin activation.

2014 ◽  
Vol 289 (28) ◽  
pp. 19810-19822 ◽  
Author(s):  
Fabian Kurth ◽  
Wilko Duprez ◽  
Lakshmanane Premkumar ◽  
Mark A. Schembri ◽  
David P. Fairlie ◽  
...  

1998 ◽  
Vol 330 (2) ◽  
pp. 861-869 ◽  
Author(s):  
J. Raj MEHTA ◽  
Beate DIEFENBACH ◽  
Alex BROWN ◽  
Eilish CULLEN ◽  
Alfred JONCZYK ◽  
...  

The molecular mechanisms of αvβ3 integrin affinity regulation have important biological implications in tumour development, wound repair and angiogenesis. We expressed, purified and characterized recombinant forms of human αvβ3 (r-αvβ3) and compared the activation state of these with αvβ3 in its cellular environment. The ligand specificity and selectivity of recombinant full-length and double transmembrane truncations of r-αvβ3 cloned in BacPAK6 vectors and expressed in Sf9 and High Five insect cells were compared with those of native placental αvβ3 and the receptor in situ on the cell surface. r-αvβ3 integrins were purified by affinity chromatography from detergent extracts of cells (full-length), and from the culture medium of cells expressing double-truncated r-αvβ3. r-αvβ3 had the same epitopes, ligand-binding specificities, bivalent cation requirements and susceptibility to RGD-containing peptides as native αvβ3. On M21-L4 melanoma cells, αvβ3 mediated binding to vitronectin, but not to fibrinogen unless activated with Mn2+. Non-activated αIIbβ3 integrin as control in M21-L-IIb cells had the opposite profile, mediating binding to fibrinogen, but not to vitronectin unless activated with Mn2+. Thus these receptors had moderate to low ligand affinity. In marked contrast, purified αvβ3 receptors, with or without transmembrane and cytoplasmic domains, were constitutively of high affinity and able to bind strongly to vitronectin, fibronectin and fibrinogen under physiological conditions. Our data suggest that, in contrast with the positive regulation of αIIbβ3 in situ, intracellular controls lower the affinity of αvβ3, and the cytoplasmic domains may act as a target for negative regulators of αvβ3 activity.


2011 ◽  
Vol 286 (47) ◽  
pp. 40608-40613 ◽  
Author(s):  
Jinghua Lu ◽  
Jeff L. Ellsworth ◽  
Nels Hamacher ◽  
Si Won Oak ◽  
Peter D. Sun

2020 ◽  
Vol 76 (9) ◽  
pp. 876-888
Author(s):  
Ravi K. Lokareddy ◽  
Ying-Hui Ko ◽  
Nathaniel Hong ◽  
Steven G. Doll ◽  
Marcin Paduch ◽  
...  

The genome-packaging motor of tailed bacteriophages and herpesviruses is a multisubunit protein complex formed by several copies of a large (TerL) and a small (TerS) terminase subunit. The motor assembles transiently at the portal protein vertex of an empty precursor capsid to power the energy-dependent packaging of viral DNA. Both the ATPase and nuclease activities associated with genome packaging reside in TerL. Structural studies of TerL from bacteriophage P22 have been hindered by the conformational flexibility of this enzyme and its susceptibility to proteolysis. Here, an unbiased, synthetic phage-display Fab library was screened and a panel of high-affinity Fabs against P22 TerL were identified. This led to the discovery of a recombinant antibody fragment, Fab4, that binds a 33-amino-acid α-helical hairpin at the N-terminus of TerL with an equilibrium dissociation constant K d of 71.5 nM. A 1.51 Å resolution crystal structure of Fab4 bound to the TerL epitope (TLE) together with a 1.15 Å resolution crystal structure of the unliganded Fab4, which is the highest resolution ever achieved for a Fab, elucidate the principles governing the recognition of this novel helical epitope. TLE adopts two different conformations in the asymmetric unit and buries as much as 1250 Å2 of solvent-accessible surface in Fab4. TLE recognition is primarily mediated by conformational changes in the third complementarity-determining region of the Fab4 heavy chain (CDR H3) that take place upon epitope binding. It is demonstrated that TLE can be introduced genetically at the N-terminus of a target protein, where it retains high-affinity binding to Fab4.


2010 ◽  
Vol 391 (1) ◽  
Author(s):  
Renu Batra-Safferling ◽  
Joachim Granzin ◽  
Susanne Mödder ◽  
Silke Hoffmann ◽  
Dieter Willbold

Abstract Src homology 3 (SH3) domains are mediators of protein-protein interactions. They comprise approximately 60 amino acid residues and are found in many intracellular signaling proteins. Here, we present the crystal structure of the SH3 domain from phosphatidylinositol 3-kinase (PI3K) in complex with the 12-residue proline-rich peptide PD1R (HSKRPLPPLPSL). The crystal structure of the PI3K SH3-PD1R complex at a resolution of 1.7 Å reveals type I ligand orientation of the bound peptide with an extended conformation where the central portion forms a left-handed type II polyproline (PPII) helix. The overall structure of the SH3 domain shows minimal changes on ligand binding. In addition, we also attempted crystallization with another peptide ligand (PD1) where the residue at anchor position P-3 is a tyrosine. The crystals obtained did not contain the PD1 ligand; instead, the ligand binding site is partially occupied by residues Arg18 and Trp55 from the symmetry-related PI3K SH3 molecule. Considering these crystal structures of PI3K SH3 together with published reports, we provide a comparative analysis of protein-ligand interactions that has helped us identify the individual residues which play an important role in defining target specificity.


2013 ◽  
Vol 454 (2) ◽  
pp. 311-321 ◽  
Author(s):  
Steven M. Sine ◽  
Sun Huang ◽  
Shu-Xing Li ◽  
Corrie J. B. daCosta ◽  
Lin Chen

On the basis of the crystal structure of a pentameric α7 ligand-binding domain chimaera with bound α-bungarotoxin, mutagenesis and radioligand-binding measurements show that high-affinity target-selective binding depends on interactions between a single conserved tyrosine residue in α7 and nearby conserved and non-conserved residues.


2009 ◽  
pp. n/a-n/a ◽  
Author(s):  
Robert Cheng ◽  
Brunella Felicetti ◽  
Shilpa Palan ◽  
Ian Toogood-Johnson ◽  
Christoph Scheich ◽  
...  

1998 ◽  
Vol 188 (2) ◽  
pp. 277-286 ◽  
Author(s):  
Willem W. Overwijk ◽  
Allan Tsung ◽  
Kari R. Irvine ◽  
Maria R. Parkhurst ◽  
Theresa J. Goletz ◽  
...  

Many tumor-associated antigens are nonmutated, poorly immunogenic tissue differentiation antigens. Their weak immunogenicity may be due to “self”-tolerance. To induce autoreactive T cells, we studied immune responses to gp100/pmel 17, an antigen naturally expressed by both normal melanocytes and melanoma cells. Although a recombinant vaccinia virus (rVV) encoding the mouse homologue of gp100 was nonimmunogenic, immunization of normal C57BL/6 mice with the rVV encoding the human gp100 elicited a specific CD8+ T cell response. These lymphocytes were cross-reactive with mgp100 in vitro and treated established B16 melanoma upon adoptive transfer. To understand the mechanism of the greater immunogenicity of the human version of gp100, we characterized a 9-amino acid (AA) epitope, restricted by H-2Db, that was recognized by the T cells. The ability to induce specific T cells with human but not mouse gp100 resulted from differences within the major histocompatibility complex (MHC) class I–restricted epitope and not from differences elsewhere in the molecule, as was evidenced by experiments in which mice were immunized with rVV containing minigenes encoding these epitopes. Although the human (hgp10025–33) and mouse (mgp10025–33) epitopes were homologous, differences in the three NH2-terminal AAs resulted in a 2-log increase in the ability of the human peptide to stabilize “empty” Db on RMA-S cells and a 3-log increase in its ability to trigger interferon γ release by T cells. Thus, the fortuitous existence of a peptide homologue with significantly greater avidity for MHC class I resulted in the generation of self-reactive T cells. High-affinity, altered peptide ligands might be useful in the rational design of recombinant and synthetic vaccines that target tissue differentiation antigens expressed by tumors.


Blood ◽  
2011 ◽  
Vol 118 (21) ◽  
pp. 862-862
Author(s):  
Jun Ishihara ◽  
Terumasa Umemoto ◽  
Masayuki Yamato ◽  
Yoshiko Shiratsuchi ◽  
Brian G. Petrich ◽  
...  

Abstract Abstract 862 Hematopoietic stem cells (HSCs) govern hematopoiesis by giving rise to lymphoid, myeloid, and erythroid cells throughout adult life. HSCs reside in a specialized microenvironment termed “niche,” where their functions are regulated by several factors such as cytokines and extracellular matrix (ECM). Nov (CCN3), a member of the CCN family, is a well-known soluble factor that regulates several biological events by binding to integrin receptors, growth factors, and ECM. Recently, Nov has been reported to function as a positive regulator of HSCs, as evidenced by enhanced HSC activity in response to enforced Nov expression in HSCs (Gupta et al., Science, 2007). Furthermore, Nov has been identified as a target gene for Hoxb4, a transcription factor that governs the self-renewal capacity of HSCs (Ohshima et al., Blood, 2011). In addition, Nov expression in HSCs is upregulated by IL-3 via STAT5 activation (Kimura et al., J. Biol. Chem., 2010). Thus, models for the regulation of Nov expression in HSCs have been proposed; however, the mechanisms underlying the regulation of HSC functions by Nov remain unclear. Here, we present a novel mechanism for the enhancement of HSC activity by Nov. We first suspected that thrombopoietin (TPO), an essential cytokine for HSC maintenance, may promote Nov expression, given that TPO not only induces STAT5 activation in HSCs (Seita et al., PNAS, 2007) but also stimulates Hoxb4 expression (Kirito et al., Blood, 2003). Therefore, we examined the expression of Nov by real-time quantitative RT-PCR in CD150+ CD34− c-kit+ Sca-1+ lineage− (CD150+ CD34− KSL) HSCs that were treated with TPO. Similar to IL-3, TPO significantly enhanced Nov expression, compared to that in fresh unstimulated HSCs (p < 0.05). In contrast, stem cell factor (SCF), a critical cytokine for the maintenance of HSC functions, completely lost Nov expression. This strong link between Nov and TPO in HSCs suggests that TPO may play a key role in the regulation of HSCs by Nov. Therefore, we examined the long-term repopulating (LTR) activity of HSCs in transplantation assays following treatment with exogenous Nov in the presence of TPO or SCF. Interestingly, TPO stimulation supported the Nov-induced enhancement of HSC LTR activity (p < 0.05), whereas this positive effect was completely abolished in the presence of SCF. Furthermore, treatment with TPO, but not with SCF, increased the capture of Nov by HSCs, as measured by flow cytometry analyses using Alexa647-labeled Nov (p < 0.001), which strongly suggests that the positive effect of exogenous Nov on the LTR activity of HSCs is specifically dependent on TPO. More importantly, this TPO-mediated promotion of Nov binding to HSCs was blocked by antibodies against integrin αv or β3, indicating that integrin avβ3 is the primary receptor for Nov on HSCs. Previously, we demonstrated that outside-in signaling via phosphorylated Tyr747 of integrin 3 (β3PY747) is indispensable for the TPO-dependent maintenance of mouse HSCs, which requires the activation (conformational change for high affinity ligand binding) of αvβ3 integrin via TPO-induced inside-out signaling (Umemoto et al., Blood ASH abstract, 2009). Given our previous data, the results from the present study suggest that Nov regulates the LTR activity of HSCs through outside-in signaling especially via β3PY747, following its ligation to integrin αvβ3 that has been activated by TPO-induced inside-out signaling. Finally, we confirmed our hypothesis by using β3 integrin mutant mice that harbor an alanine substitution of tyrosine 747 in the cytoplasmic tail of β3 integrin (Y747A), which impairs integrin inside-out and outside-in signaling. Transplantation assays using Y747A-expressing HSCs revealed that inhibition of bidirectional integrin signaling by the Y747A mutation completely abolished the positive TPO-dependent effect of Nov, even when αvβ3 integrin activation was rescued by Mn2+, an external inducer of integrin activation that acts independently of inside-out signaling. Taken together, our findings demonstrate that Nov positively regulates HSC activity through outside-in signaling via β3PY747, following its TPO-dependent ligation to integrin αvβ3. Thus, we present a novel mechanistic link between Nov, β3 integrin, and TPO in HSCs. Disclosures: No relevant conflicts of interest to declare.


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