scholarly journals The C2 domain of the Rsp5 ubiquitin ligase binds membrane phosphoinositides and directs ubiquitination of endosomal cargo

2004 ◽  
Vol 165 (1) ◽  
pp. 135-144 ◽  
Author(s):  
Rebecca Dunn ◽  
Deborah A. Klos ◽  
Adam S. Adler ◽  
Linda Hicke
Keyword(s):  
Ubiquitin Ligase ◽  
Protein Trafficking ◽  
C2 Domain ◽  
Intact Cells ◽  
Membrane Interaction ◽  
Cargo Protein ◽  
Membrane Protein Trafficking ◽  
Cargo Proteins

Ubiquitin ligases of the Nedd4 family regulate membrane protein trafficking by modifying both cargo proteins and the transport machinery with ubiquitin. Here, we investigate the role of the yeast Nedd4 homologue, Rsp5, in protein sorting into vesicles that bud into the multivesicular endosome (MVE) en route to the vacuole. A mutant lacking the Rsp5 C2 domain is unable to ubiquitinate or sort biosynthetic cargo into MVE vesicles, whereas endocytic cargo is ubiquitinated and sorted efficiently. The C2 domain binds specifically to phosphoinositides in vitro and is sufficient for localization to membranes in intact cells. Mutation of a lysine-rich patch on the surface of the C2 domain abolishes membrane interaction and disrupts sorting of biosynthetic cargo. Translational fusion of ubiquitin to a biosynthetic cargo protein alleviates the requirement for the C2 domain in its MVE sorting. These results demonstrate that the C2 domain specifies Rsp5-dependent ubiquitination of endosomal cargo and suggest that Rsp5 function is regulated by membrane phosphoinositides.

scholarly journals Structural Analysis of the Myo1c and Neph1 Complex Provides Insight into the Intracellular Movement of Neph1

2016 ◽  
Vol 36 (11) ◽  
pp. 1639-1654 ◽  
Author(s):  
Ehtesham Arif ◽  
Pankaj Sharma ◽  
Ashish Solanki ◽  
Leena Mallik ◽  
Yogendra S. Rathore ◽  
...  
Keyword(s):  
Shape Change ◽  
Live Cell ◽  
Event Analysis ◽  
Binding Assays ◽  
Cellular Events ◽  
Cargo Protein ◽  
Critical Residue ◽  
Cargo Proteins

The Myo1c motor functions as a cargo transporter supporting various cellular events, including vesicular trafficking, cell migration, and stereociliary movements of hair cells. Although its partial crystal structures were recently described, the structural details of its interaction with cargo proteins remain unknown. This study presents the first structural demonstration of a cargo protein, Neph1, attached to Myo1c, providing novel insights into the role of Myo1c in intracellular movements of this critical slit diaphragm protein. Using small angle X-ray scattering studies, models of predominant solution conformation of unliganded full-length Myo1c and Myo1c bound to Neph1 were constructed. The resulting structures show an extended S-shaped Myo1c with Neph1 attached to its C-terminal tail. Importantly, binding of Neph1 did not induce a significant shape change in Myo1c, indicating this as a spontaneous process or event. Analysis of interaction surfaces led to the identification of a critical residue in Neph1 involved in binding to Myo1c. Indeed, a point mutant from this site abolished interaction between Neph1 and Myo1c when tested in thein vitroand in live-cell binding assays. Live-cell imaging, including fluorescence recovery after photobleaching, provided further support for the role of Myo1c in intracellular vesicular movement of Neph1 and its turnover at the membrane.

Versatile role of the yeast ubiquitin ligase Rsp5p in intracellular trafficking

2008 ◽  
Vol 36 (5) ◽  
pp. 791-796 ◽  
Author(s):  
Naima Belgareh-Touzé ◽  
Sébastien Léon ◽  
Zoi Erpapazoglou ◽  
Marta Stawiecka-Mirota ◽  
Danièle Urban-Grimal ◽  
...  
Keyword(s):  
Plasma Membrane ◽  
Membrane Protein ◽  
Ubiquitin Ligase ◽  
Protein Trafficking ◽  
Adaptor Proteins ◽  
Binding Domains ◽  
Independent Functions ◽  
Membrane Protein Trafficking ◽  
Ubiquitin Ligase E3

The ubiquitin ligase (E3) Rsp5p is the only member of the Nedd (neural-precursor-cell-expressed, developmentally down-regulated) 4 family of E3s present in yeast. Rsp5p has several proteasome-independent functions in membrane protein trafficking, including a role in the ubiquitination of most plasma membrane proteins, leading to their endocytosis. Rsp5p is also required for the ubiquitination of endosomal proteins, leading to their sorting to the internal vesicles of MVBs (multivesicular bodies). Rsp5p catalyses the attachment of non-conventional ubiquitin chains, linked through ubiquitin Lys-63, to some endocytic and MVB cargoes. This modification appears to be required for efficient sorting, possibly because these chains have a greater affinity for the ubiquitin-binding domains present within endocytic or MVB sorting complexes. The mechanisms involved in the recognition of plasma membrane and MVB substrates by Rsp5p remain unclear. A subset of Rsp5/Nedd4 substrates have a ‘PY motif’ and are recognized directly by the WW (Trp-Trp) domains of Rsp5p. Most Rsp5p substrates do not carry PY motifs, but some may depend on PY-containing proteins for their ubiquitination by Rsp5p, consistent with the latter's acting as specificity factors or adaptors. As in other ubiquitin-conjugating systems, these adaptors are also Rsp5p substrates and undergo ubiquitin-dependent trafficking. In the present review, we discuss recent examples illustrating the role of Rsp5p in membrane protein trafficking and providing new insights into the regulation of this E3 by adaptor proteins.

scholarly journals In vivo reconstitution finds multivalent RNA-RNA interactions as drivers of mesh-like condensates

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
Weirui Ma ◽  
Gang Zheng ◽  
Wei Xie ◽  
Christine Mayr
Keyword(s):  
Surface Area ◽  
Protein Trafficking ◽  
Rna Binding ◽  
Interaction Network ◽  
Large Surface Area ◽  
High Propensity ◽  
Membrane Protein Trafficking ◽  
Protein Components

Liquid-like condensates have been thought to be sphere-like. Recently, various condensates with filamentous morphology have been observed in cells. One such condensate is the TIS granule network that shares a large surface area with the rough endoplasmic reticulum and is important for membrane protein trafficking. It has been unclear how condensates with mesh-like shapes, but dynamic protein components are formed. In vitro and in vivo reconstitution experiments revealed that the minimal components are a multivalent RNA-binding protein that concentrates RNAs that are able to form extensive intermolecular mRNA-mRNA interactions. mRNAs with large unstructured regions have a high propensity to form a pervasive intermolecular interaction network that acts as condensate skeleton. The underlying RNA matrix prevents full fusion of spherical liquid-like condensates, thus driving the formation of irregularly shaped membraneless organelles. The resulting large surface area may promote interactions at the condensate surface and at the interface with other organelles.

scholarly journals A shared pathway of exosome biogenesis operates at plasma and endosome membranes

2019 ◽  
Author(s):  
Francis K. Fordjour ◽  
George G. Daaboul ◽  
Stephen J. Gould
Keyword(s):  
Plasma Membrane ◽  
Protein Trafficking ◽  
Mechanistic Explanation ◽  
Simple Explanation ◽  
Common Pathway ◽  
Exosome Biogenesis ◽  
Cargo Protein ◽  
Cargo Proteins ◽  
Targeting Signal ◽  
Membrane Bound

AbstractEukaryotic cells secrete exosomes, which are small (~30-200 nm dia.), single membrane-bound organelles that transmit signals and molecules to other cells. Exosome-mediated signaling contributes to diverse physiological and disease processes, rendering their biogenesis of high biomedical importance. The prevailing hypothesis is that exosomes bud exclusively at endosome membranes and are released only upon endosome fusion with the plasma membrane. Here we tested this hypothesis by examining the intracellular sorting and exosomal secretion of the exosome cargo proteins CD63, CD9, and CD81. We report here that CD9 and CD81 are both localized to the plasma membrane and bud >5-fold more efficiently than endosome-localized CD63. Furthermore, we show that redirecting CD63 from endosomes to the plasma membrane by mutating its endocytosis signal (CD63/Y235A) increased its exosomal secretion ~6-fold, whereas redirecting CD9 to endosomes by adding an endosome targeting signal (CD9/YEVM) reduced its exosomal secretion ~5-fold. These data demonstrate that the plasma membrane is a major site of exosome biogenesis, and more importantly, that cells possess a common pathway for exosome protein budding that operates at both plasma and endosome membranes. Using a combination of single-particle interferometry reflectance (SPIR) imaging and immunofluorescence (IF) microscopy, we also show that variations in exosome composition are controlled by differential intracellular protein trafficking rather than by separate mechanisms of exosome biogenesis. This new view of exosome biogenesis offers a simple explanation for the pronounced compositional heterogeneity of exosomes and a validated roadmap for exosome engineering.SummaryThis study of exosome cargo protein budding reveals that cells use a common pathway for budding exosomes from plasma and endosome membranes, providing a new mechanistic explanation for exosome heterogeneity and a rational roadmap for exosome engineering.

Alternate promoters and variable splicing lead to hNedd4–2 isoforms with a C2 domain and varying number of WW domains

2003 ◽  
Vol 285 (5) ◽  
pp. F916-F929 ◽  
Author(s):  
Omar A. Itani ◽  
Jason R. Campbell ◽  
Juan Herrero ◽  
Peter M. Snyder ◽  
Christie P. Thomas
Keyword(s):  
Collecting Duct ◽  
Rnase Protection Assay ◽  
C2 Domain ◽  
Binding Studies ◽  
Specific Expression ◽  
Rnase Protection ◽  
Ww Domains ◽  
Rat Thyroid

Mutations that disrupt a PY motif in epithelial Na+ channel (ENaC) subunits increase surface expression of Na+ channels in the collecting duct, resulting in greater Na+ reabsorption. Recently, Nedd4 and Nedd4–2 have been identified as ubiquitin ligases that can interact with ENaC via its PY motifs to regulate channel activity. To further understand the role of human Nedd4–2 (hNedd4–2), we cloned its cDNAs and determined its genomic organization using a bioinformatic approach. The gene is present as a single copy, spans at least 400 kb, and contains >40 exons. Multiple 5′-exons were identified by 5′-rapid amplification of cDNA ends, and tissue-specific expression of these transcripts was noted by RT-PCR and RNase protection assay. Alternate polyadenylation signal sequences led to varying lengths of the 3′-untranslated region. Alternate splicing events within internal exons were also noted. Open reading frame analysis indicates that hNedd4–2 encode multiple protein variants with and without a C2 domain, and with a variable number of WW domains. Coexpression, in Fischer rat thyroid epithelia, of ENaC and Nedd4–2 cDNAs leads to a significant reduction in amiloride-sensitive currents, confirming a role in Na+ transport regulation. In vitro binding studies demonstrated that individual PY motifs of α-, β-, and γ-ENaC have strong affinity for WW domains 3 and 4 but not 1 and 2. These studies indicate that alternate transcripts of Nedd4–2 may interact with ENaC differently. Understanding the function of variant proteins will increase our knowledge of the role of hNedd4–2 in the regulation of ENaC and define protein domains important for Nedd4–2 function.

Notch Regulation by the Fbw7/hcdc4/Sel-10 Ubiquitin Ligase.

Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 1420-1420
Author(s):  
Jonathan E. Grim ◽  
Olga Sala ◽  
Nack Gyun Chung ◽  
Jerald Radich ◽  
Barbara J. Varnum-Finney ◽  
...  
Keyword(s):  
T Cell ◽  
Ubiquitin Ligase ◽  
Heterozygous Mutation ◽  
Candidate Peptide ◽  
Human T Cell ◽  
Notch Protein ◽  
Important Regulator

Abstract T-cell neoplasms frequently sustain mutations in the Notch1 gene, leading to the expression of constitutively active Notch proteins. Such mutations often target the C-terminal PEST domain, which is known to be involved in protein stability. The ubiquitin ligase Fbw7/hdcd4/Sel-10 is a tumor suppressor that negatively regulates Notch function by targeting the Notch protein for ubiquitination and proteasomal degradation. Although the PEST domain is known to be important for Fbw7/Notch interactions, the specific residues that regulate binding of Notch to Fbw7 have not been defined. Based on the structural motifs (known as phosphodegrons) common to known substrates of Fbw7, we have identified two candidate peptide sequences within the Notch protein and have generated a series of mutants in these regions. Using co-immunoprecipitation assays, we show that one potential phosphodegron that is outside of the PEST domain does not appear to influence Notch binding to Fbw7. However, a second potential phosphodegron is present within the PEST domain and contains a conserved threonine residue (T2512) which is central to binding of Fbw7 to Notch. A mutant in which this residue is replaced by alanine (T2512A) shows a prolonged half life when compared to wild type Notch ICD, supporting its role in Notch stability. To evaluate the role of Fbw7 mediated Notch degradation in vitro and in vivo, we used lentiviral vectors to transfect hematopoietic cells with shRNA targeting Fbw7. These studies demonstrate that Fbw7 knockdown leads to phenotypes consistent with increased Notch activity. Because Notch is commonly mutated in human leukemias, we hypothesized that Fbw7 may also sustain mutations that lead to loss of Notch regulation. We evaluated primary human T cell leukemias for mutations in Fbw7 and found that 1 of 23 samples contains a heterozygous mutation in the Fbw7 common region (R505C). We show that this mutant is deficient in binding to Notch, suggesting that Fbw7 mutation may contribute to the deregulation of Notch that is commonly seen in T-cell neoplasms. Together, this work shows that Fbw7 is an important regulator of Notch function whose mutation may be an important step in leukemogenesis.

scholarly journals Pivotal Role of the C2 Domain of the Smurf1 Ubiquitin Ligase in Substrate Selection

2011 ◽  
Vol 286 (19) ◽  
pp. 16861-16870 ◽  
Author(s):  
Kefeng Lu ◽  
Ping Li ◽  
Minghua Zhang ◽  
Guichun Xing ◽  
Xin Li ◽  
...  
Keyword(s):  
Ubiquitin Ligase ◽  
Pivotal Role ◽  
C2 Domain ◽  
Substrate Selection

scholarly journals BLOC-1 is required for selective membrane protein trafficking from endosomes to primary cilia

2017 ◽  
Vol 216 (7) ◽  
pp. 2131-2150 ◽  
Author(s):  
William J. Monis ◽  
Victor Faundez ◽  
Gregory J. Pazour
Keyword(s):  
Protein Trafficking ◽  
Primary Cilia ◽  
Recycling Endosome ◽  
Ciliary Membrane ◽  
Membrane Protein Trafficking ◽  
Selective Membrane ◽  
Specific Proteins ◽  
Lysosome Related Organelles ◽  
Extracellular Environment

Primary cilia perceive the extracellular environment through receptors localized in the ciliary membrane, but mechanisms directing specific proteins to this domain are poorly understood. To address this question, we knocked down proteins potentially important for ciliary membrane targeting and determined how this affects the ciliary trafficking of fibrocystin, polycystin-2, and smoothened. Our analysis showed that fibrocystin and polycystin-2 are dependent on IFT20, GMAP210, and the exocyst complex, while smoothened delivery is largely independent of these components. In addition, we found that polycystin-2, but not smoothened or fibrocystin, requires the biogenesis of lysosome-related organelles complex-1 (BLOC-1) for ciliary delivery. Consistent with the role of BLOC-1 in sorting from the endosome, we find that disrupting the recycling endosome reduces ciliary polycystin-2 and causes its accumulation in the recycling endosome. This is the first demonstration of a role for BLOC-1 in ciliary assembly and highlights the complexity of pathways taken to the cilium.

scholarly journals Fluorescence analysis of the interaction of isometamidium with Trypanosoma congolense

1993 ◽  
Vol 292 (1) ◽  
pp. 31-35 ◽  
Author(s):  
D Zilberstein ◽  
J Wilkes ◽  
H Hirumi ◽  
A S Peregrine
Keyword(s):  
Time Course ◽  
Fluorescence Analysis ◽  
Trypanosoma Congolense ◽  
Sub Saharan Africa ◽  
Temperature Dependent ◽  
Intact Cells ◽  
Uptake Process ◽  
Sub Saharan

Isometamidium chloride (Samorin) is the only compound recommended for prophylaxis against bovine trypanosomiasis in sub-Saharan Africa. The fluorescence property of this compound was used to investigate the interaction of the molecule with in vitro-derived bloodstream forms of Trypanosoma congolense IL 1180. Incubation of isometamidium with trypanosomes at 37 degrees C for 180 min resulted in a gradual alteration of the lambda max. with time (from 600 to 584 nm) and an increase in the intensity of trypanosome-associated fluorescence of approx. 2-fold. The alteration in fluorescence was temperature-dependent and inhibited by the addition of N-ethylmaleimide. In contrast, with intact cells addition of digitonin caused a rapid increase in fluorescence intensity to approximately four times that observed with intact cells. Uptake of isometamidium was also determined using radiolabelled drug; the results indicated that the time course of the uptake process resembled the fluorescence profile and was temperature-dependent. The results therefore indicate that the alteration of fluorescence is due to interaction of isometamidium with an intracellular component(s) and that isometamidium is transported across the plasma membrane via a protein carrier. The data also indicate that the described fluorescence technique can be used to investigate the role of membrane transport in resistance to isometamidium.

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