On the relationship between folding and chemical landscapes in enzyme catalysis

Abstract Human catechol-O-methyltransferase, a key enzyme related to neurotransmitter metabolism, catalyses a methyl transfer from S-adenosylmethionine to catechol. Although extensive studies aim to understand the enzyme mechanisms, the connection of protein dynamics and enzyme catalysis is still not clear. Here, W38in (Trp143Phe) and W38in/Y68A (Trp143Phe with Tyr68Ala) mutants were carried out to study the relationship of dynamics and catalysis in nano-second timescale using time-resolved fluorescence lifetimes and Stokes shifts in various solvents. The comprehensive data implied the mutant W38in/Y68A with lower activity is more rigid than the ‘WT’−W38in, suggesting the importance of flexibility at residue 38 to maintain the optimal catalysis.

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Uncovering the Relationship between the Change in Heat Capacity for Enzyme Catalysis and Vibrational Frequency through Isotope Effect Studies

ACS Catalysis ◽

10.1021/acscatal.8b01025 ◽

2018 ◽

Vol 8 (6) ◽

pp. 5340-5349 ◽

Cited By ~ 4

Author(s):

Hannah B. L. Jones ◽

Rory M. Crean ◽

Christopher Matthews ◽

Anna B. Troya ◽

Michael J. Danson ◽

...

Keyword(s):

Heat Capacity ◽

Isotope Effect ◽

Enzyme Catalysis ◽

Vibrational Frequency ◽

The Relationship

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Adjust the Reaction Conditions of Enzyme Catalysis to Product Fructooligosaccharides Containing Different Components Proportions

Advanced Materials Research ◽

10.4028/www.scientific.net/amr.343-344.403 ◽

2011 ◽

Vol 343-344 ◽

pp. 403-411

Author(s):

Ji Cheng Ding ◽

Xiao Ling Lv

Keyword(s):

Enzyme Catalysis ◽

Maximum Yield ◽

Reaction Parameters ◽

Reaction Conditions ◽

Food Ingredients ◽

Fermentation Time ◽

Beneficial Effects ◽

First Time ◽

The Relationship ◽

Basic Investigation

Fructooligosaccharides (FOSs), as a mixture of 1-kestose, nystose, and 1F-fructofuranosylnystose oligosaccharides, exhibit lots of beneficial effects on our health and have been used as food ingredients. There have been a lot of reports on how to raise FOSs yield in different ways, but almost nobody did any deeply studies on the composition of FOSs—proportion of each component. However, different components may have different functions and some even show side-effects. In this research, we employed immobilized fructosyltransferase to produce FOSs and got a maximum yield of 56.12 %. Then we successfully produced FOSs of different components proportions by adjusting the reaction parameters—pH, temperature, and fermentation time. We designed six groups to investigate the relationship between reaction parameters and components proportions, and the results showed that pH condition mainly affects the yield while reaction time mainly affects components proportions. It is the first time that the components proportions of FOSs are systemically investigated, and we finally figured out six protocols for producing different FOSs. This is a basic investigation on the relationship between FOSs components proportions and reaction conditions. We hope this research can be helpful for other researchers who are interested in this area.

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Interstellar gas in the central region of the Galaxy

Symposium - International Astronomical Union ◽

10.1017/s0074180900101032 ◽

1967 ◽

Vol 31 ◽

pp. 239-251 ◽

Cited By ~ 3

Author(s):

F. J. Kerr

Keyword(s):

Central Region ◽

Galactic Plane ◽

Neutral Hydrogen ◽

Continuum Emission ◽

Galactic Centre ◽

Interstellar Gas ◽

Hydrogen Recombination ◽

The Galaxy ◽

Centre Region ◽

The Relationship

A review is given of information on the galactic-centre region obtained from recent observations of the 21-cm line from neutral hydrogen, the 18-cm group of OH lines, a hydrogen recombination line at 6 cm wavelength, and the continuum emission from ionized hydrogen.Both inward and outward motions are important in this region, in addition to rotation. Several types of observation indicate the presence of material in features inclined to the galactic plane. The relationship between the H and OH concentrations is not yet clear, but a rough picture of the central region can be proposed.

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The relationship of the scleractinian corals to the rugose corals

Paleobiology ◽

10.1017/s0094837300025707 ◽

1980 ◽

Vol 6 (02) ◽

pp. 146-160 ◽

Cited By ~ 29

Author(s):

William A. Oliver

Keyword(s):

Critical Points ◽

Scleractinian Corals ◽

Convincing Evidence ◽

Early Triassic ◽

Rugose Corals ◽

History Of ◽

The Subject ◽

Relationship Of ◽

The Relationship ◽

Biologic Factors

The Mesozoic-Cenozoic coral Order Scleractinia has been suggested to have originated or evolved (1) by direct descent from the Paleozoic Order Rugosa or (2) by the development of a skeleton in members of one of the anemone groups that probably have existed throughout Phanerozoic time. In spite of much work on the subject, advocates of the direct descent hypothesis have failed to find convincing evidence of this relationship. Critical points are:(1) Rugosan septal insertion is serial; Scleractinian insertion is cyclic; no intermediate stages have been demonstrated. Apparent intermediates are Scleractinia having bilateral cyclic insertion or teratological Rugosa.(2) There is convincing evidence that the skeletons of many Rugosa were calcitic and none are known to be or to have been aragonitic. In contrast, the skeletons of all living Scleractinia are aragonitic and there is evidence that fossil Scleractinia were aragonitic also. The mineralogic difference is almost certainly due to intrinsic biologic factors.(3) No early Triassic corals of either group are known. This fact is not compelling (by itself) but is important in connection with points 1 and 2, because, given direct descent, both changes took place during this only stage in the history of the two groups in which there are no known corals.

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Choosing a Markov blanket

Behavioral and Brain Sciences ◽

10.1017/s0140525x19002632 ◽

2020 ◽

Vol 43 ◽

Author(s):

Thomas Parr

Keyword(s):

Markov Blanket ◽

Target Article ◽

The Relationship

Abstract This commentary focuses upon the relationship between two themes in the target article: the ways in which a Markov blanket may be defined and the role of precision and salience in mediating the interactions between what is internal and external to a system. These each rest upon the different perspectives we might take while “choosing” a Markov blanket.

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Tinkering with cognitive gadgets: Cultural evolutionary psychology meets active inference

Behavioral and Brain Sciences ◽

10.1017/s0140525x19001018 ◽

2019 ◽

Vol 42 ◽

Author(s):

Paul Benjamin Badcock ◽

Axel Constant ◽

Maxwell James Désormeau Ramstead

Keyword(s):

Evolutionary Psychology ◽

Research Program ◽

Active Inference ◽

Innovative Research ◽

Cognitive Faculties ◽

Cultural Evolutionary ◽

The Relationship

Abstract Cognitive Gadgets offers a new, convincing perspective on the origins of our distinctive cognitive faculties, coupled with a clear, innovative research program. Although we broadly endorse Heyes’ ideas, we raise some concerns about her characterisation of evolutionary psychology and the relationship between biology and culture, before discussing the potential fruits of examining cognitive gadgets through the lens of active inference.

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Radiation Damage, Contrast and Statistics in High Resolution Biological Electron Microscopy

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100068291 ◽

1970 ◽

Vol 28 ◽

pp. 260-261

Author(s):

Robert M. Glaeser

Keyword(s):

High Resolution ◽

Particle Flux ◽

Unit Area ◽

Signal To Noise ◽

Resolution Image ◽

High Resolution Image ◽

Pass Through ◽

Counting Statistics ◽

The Relationship ◽

Picture Element

It is well known that a large flux of electrons must pass through a specimen in order to obtain a high resolution image while a smaller particle flux is satisfactory for a low resolution image. The minimum particle flux that is required depends upon the contrast in the image and the signal-to-noise (S/N) ratio at which the data are considered acceptable. For a given S/N associated with statistical fluxtuations, the relationship between contrast and “counting statistics” is s131_eqn1, where C = contrast; r2 is the area of a picture element corresponding to the resolution, r; N is the number of electrons incident per unit area of the specimen; f is the fraction of electrons that contribute to formation of the image, relative to the total number of electrons incident upon the object.

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Skeletal elements of crinoid echinoderms: High-resolution structural and microanalytical results

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100074768 ◽

1983 ◽

Vol 41 ◽

pp. 194-195

Author(s):

D. F. Blake ◽

L. F. Allard ◽

D. R. Peacor

Keyword(s):

High Resolution ◽

Marine Invertebrates ◽

Sea Urchins ◽

Structural Features ◽

Sea Stars ◽

High Resolution Tem ◽

Relationship Of ◽

The Relationship ◽

Insight Into

Echinodermata is a phylum of marine invertebrates which has been extant since Cambrian time (c.a. 500 m.y. before the present). Modern examples of echinoderms include sea urchins, sea stars, and sea lilies (crinoids). The endoskeletons of echinoderms are composed of plates or ossicles (Fig. 1) which are with few exceptions, porous, single crystals of high-magnesian calcite. Despite their single crystal nature, fracture surfaces do not exhibit the near-perfect {10.4} cleavage characteristic of inorganic calcite. This paradoxical mix of biogenic and inorganic features has prompted much recent work on echinoderm skeletal crystallography. Furthermore, fossil echinoderm hard parts comprise a volumetrically significant portion of some marine limestones sequences. The ultrastructural and microchemical characterization of modern skeletal material should lend insight into: 1). The nature of the biogenic processes involved, for example, the relationship of Mg heterogeneity to morphological and structural features in modern echinoderm material, and 2). The nature of the diagenetic changes undergone by their ancient, fossilized counterparts. In this study, high resolution TEM (HRTEM), high voltage TEM (HVTEM), and STEM microanalysis are used to characterize tha ultrastructural and microchemical composition of skeletal elements of the modern crinoid Neocrinus blakei.

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