The Molecular Relationships of Possum and Glider Families as Revealed by Dna-Dna Hybridizations

1995 ◽  
Vol 43 (3) ◽  
pp. 231 ◽  
Author(s):  
D Edwards ◽  
M Westerman
Keyword(s):  
Phylogenetic Analysis ◽  
Extant Species ◽  
The Family ◽  
Dna Hybridisation ◽  
Molecular Relationships ◽  
Dna Hybridizations

The extant species of possums and gliders (Marsupialia : Diprotodontia) can be classified into one or other of six families-Acrobatidae, Phalangeridae, Burramyidae, Petauridae, Pseudocheiridae or Tarsipedidae. On the basis of morphological and albumin serology studies, these families have been assigned to two superfamilies: the Phalangeroidea (Phalangeridae) and the Petauroidea (all five other families). It has been suggested, however, that the Burramyidae should be placed in the superfamily Phalangeroidea and not in the Petauroidea. We report here on DNA-DNA hybridisation comparisons using representatives from all six extant families of possums and gliders. Phylogenetic analysis of these data was unable to resolve the precise relationships of the Burramyidae viz a viz other families, but the family appeared to be no more closely related to the Phalangeridae than to the four other families. The Burramyidae would probably be best assigned, at present, to a third superfamily. The radiation of the possum and glider families appears to be linked to the change in vegetation associated with the separation of Australia from Antarctica in the early-to-mid Eocene.

DNA-DNA Hybridization and the Position of Leadbeater Possum (Gymnobelideus-Leadbeateri Mccoy) in the Family Petauridae (Marsupialia, Diprotodontia)

1992 ◽  
Vol 40 (6) ◽  
pp. 563 ◽  
Author(s):  
D Edwards ◽  
M Westerman
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Hybridization ◽  
Sister Group ◽  
Bootstrap Analysis ◽  
The Family ◽  
Branch Lengths ◽  
Dna Hybridisation ◽  
Optimal Tree ◽  
Microcomplement Fixation ◽  
Leadbeater's Possum

The diprotodontian family Petauridae is composed of two subfamilies: Petaurinae (gliders) and Dactylopsilinae (striped possums). Leadbeater's possum (Gymnobelideus leadbeateri) has generally been placed among the petaurines on the basis of morphological, particularly dental, characters. Recent microcomplement fixation data, however, suggest that G. leadbeateri is a sister group to the Dactylopsilinae. We report DNA-DNA hybridisation comparisons among Leadbeater's possum, two dactylopsilines, two petaurines, and an outgroup pseudocheirid. Phylogenetic analysis of these data support the basic dichotomy between petaurines and dactylopsilines, and suggest that G. leadbeateri is more closely related to dactylopsilines. Resolution of this relationship, assayed by bootstrap analysis, is limited, but branch lengths on the optimal tree suggest a rapid initial diversification of three lineages within the Petauridae: dactylopsilines, petaurines and G. leadbeateri.

scholarly journals A new member of fossil balaenid (Mysticeti, Cetacea) from the early Pliocene of Hokkaido, Japan

2020 ◽  
Vol 7 (4) ◽  
pp. 192182
Author(s):  
Yoshihiro Tanaka ◽  
Hitoshi Furusawa ◽  
Masaichi Kimura
Keyword(s):  
Phylogenetic Analysis ◽  
Dorsal View ◽  
Early Miocene ◽  
Early Pliocene ◽  
Zygomatic Process ◽  
Extant Species ◽  
The Family ◽  
Phylogenetic Hypotheses

The family Balaenidae includes two genus and four extant species. Extinct balaenids are known for at least four genus and 10 species. The oldest known record of members of the Balaenidae is known from the early Miocene, but still need more early members of the family to provide better phylogenetic hypotheses. FCCP 1049 from the lower part of the Chippubetsu Formation, Fukagawa Group (3.5–5.2 Ma, Zanclean, early Pliocene) was preliminary described and identified as Balaenula sp. by Furusawa and Kimura in 1982. Later works discussed that FCCP 1049 is different from the genus, and is placed in different clade from Balaenula astensis . The result of our phylogenetic analysis places FCCP 1049 basal to Balaenella brachyrhynus , and is again separated from B. astensis. In this study, FCCP 1049 is re-described and named as Archaeobalaena dosanko gen. et sp. nov. Archaeobalaena dosanko is distinguishable from other balaenids by having a deep promontorial groove of the pars cochlearis of the periotic. Archaeobalaena dosanko can be differentiated from other balaenids, except Morenocetus parvus by having a slender zygomatic process, and posteriorly oriented postorbital process in dorsal view. Archaeobalaena dosanko adds detailed skull, periotic and bulla morphologies for the earlier balaenids.

Early Eocene Ripogonum (Liliales: Ripogonaceae) leaf macrofossils from southern Australia

2009 ◽  
Vol 22 (3) ◽  
pp. 219 ◽  
Author(s):  
John G. Conran ◽  
Raymond J. Carpenter ◽  
Gregory J. Jordan
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Evolutionary History ◽  
Early Eocene ◽  
Present Evidence ◽  
Fossil Leaves ◽  
Extant Species ◽  
The Family ◽  
Papua New Guinean ◽  
A New Species

We present evidence that fossil leaves from an early Eocene estuarine mudstone deposit at Lowana Road in western Tasmania include the oldest records of the extant monocot genus, Ripogonum (Ripogonaceae). These fossils are similar to the extant eastern Australian and Papua New Guinean R. album R.Br. and New Zealand R. scandens J.R. et G.Forst., and are described as a new species, R. tasmanicum Conran, R.J.Carp. & G.J.Jord. The venation, cuticular and other leaf features of this fossil are included in a morphology-based phylogenetic analysis for the genus, and character evolution is discussed in relation to the ecology of the extant species and the palaeoenvironments of known Ripogonaceae fossil sites. The fossil (albeit on leaf characters) was placed close to the base of a black-fruited, Australian endemic Ripogonum clade. This suggests that the family have a long and conservative evolutionary history in association with moist forests, with the fossil locality showing palaeoclimate similar to the environments that most Ripogonum species still occupy today.

scholarly journals Extensive Phylogenetic Analysis of Piscine Orthoreovirus Genomic Sequences Shows the Robustness of Subgenotype Classification

Pathogens ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 41
Author(s):  
Marcos Godoy ◽  
Daniel A. Medina ◽  
Rudy Suarez ◽  
Sandro Valenzuela ◽  
Jaime Romero ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Genetic Variation ◽  
Sequence Analysis ◽  
Molecular Phylogeny ◽  
Phylogenetic Trees ◽  
Genomic Segment ◽  
Double Stranded Rna ◽  
The Family ◽  
Original Classification

Piscine orthoreovirus (PRV) belongs to the family Reoviridae and has been described mainly in association with salmonid infections. The genome of PRV consists of about 23,600 bp, with 10 segments of double-stranded RNA, classified as small (S1 to S4), medium (M1, M2 and M3) and large (L1, L2 and L3); these range approximately from 1000 bp (segment S4) to 4000 bp (segment L1). How the genetic variation among PRV strains affects the virulence for salmonids is still poorly understood. The aim of this study was to describe the molecular phylogeny of PRV based on an extensive sequence analysis of the S1 and M2 segments of PRV available in the GenBank database to date (May 2020). The analysis was extended to include new PRV sequences for S1 and M2 segments. In addition, subgenotype classifications were assigned to previously published unclassified sequences. It was concluded that the phylogenetic trees are consistent with the original classification using the PRV genomic segment S1, which differentiates PRV into two major genotypes, I and II, and each of these into two subgenotypes, designated as Ia and Ib, and IIa and IIb, respectively. Moreover, some clusters of country- and host-specific PRV subgenotypes were observed in the subset of sequences used. This work strengthens the subgenotype classification of PRV based on the S1 segment and can be used to enhance research on the virulence of PRV.

A REVISED GENERIC SYNOPSIS OF HYACINTHACEAE IN SUB-SAHARAN AFRICA, BASED ON MOLECULAR EVIDENCE, INCLUDING NEW COMBINATIONS AND THE NEW TRIBE PSEUDOPROSPEREAE

2003 ◽  
Vol 60 (3) ◽  
pp. 533-568 ◽  
Author(s):  
J. C. MANNING ◽  
P. GOLDBLATT ◽  
M. F. FAY
Keyword(s):  
Phylogenetic Analysis ◽  
Sub Saharan Africa ◽  
Molecular Evidence ◽  
New Combinations ◽  
Generic Level ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Single Genus ◽  
New Tribe ◽  
Sub Saharan

A revised generic synopsis of sub-Saharan Hyacinthaceae is presented, based on a molecular phylogenetic analysis of the family. Generic rank is accorded only to reciprocally monophyletic clades that can be distinguished by recognizable morphological discontinuities, thereby permitting an appropriate generic assignment of species not included in the analysis. Three subfamilies are recognized within the region. Subfamily Ornithogaloideae, characterized by flattened or angular seeds with tightly adhering testa, is considered to include the single genus Ornithogalum, which is expanded to include the genera Albuca, Dipcadi, Galtonia, Neopatersonia and Pseudogaltonia. Recognizing any of these segregates at generic level renders the genus Ornithogalum polyphyletic, while subdivision of Ornithogalum into smaller, morphologically distinguishable segregates in order to preserve the monophyly of each is not possible. Subfamily Urgineoideae, characterized by flattened or winged seeds with brittle, loosely adhering testa, comprises the two mainland African genera Bowiea and Drimia. The latter is well circumscribed by its deciduous, short-lived perianth and includes the previously recognized genera Litanthus, Rhadamanthus, Schizobasis and Tenicroa. The monotypic Madagascan Igidia is provisionally included in the subfamily as a third genus on the basis of its seeds, pending molecular confirmation of its relationships. Subfamily Hyacinthoideae resolves into three clades, distinguished as tribes Hyacintheae (strictly northern hemisphere and not treated further), Massonieae and Pseudoprospereae tribus nov. Full descriptions and a key to their identification are provided for all genera. New combinations reflecting the generic circumscriptions adopted here are made for most African and all Indian and Madagascan species.

A Family of Genes Clustered at the Triplo-lethal Locus of Drosophila melanogaster Has an Unusual Evolutionary History and Significant Synteny With Anopheles gambiae

Genetics ◽  
2003 ◽  
Vol 165 (2) ◽  
pp. 613-621 ◽  
Author(s):  
Douglas R Dorer ◽  
Jamie A Rudnick ◽  
Etsuko N Moriyama ◽  
Alan C Christensen
Keyword(s):  
Phylogenetic Analysis ◽  
Drosophila Melanogaster ◽  
Anopheles Gambiae ◽  
Evolutionary History ◽  
Codon Bias ◽  
Good Target ◽  
The Family ◽  
Genes Encoding ◽  
And Function ◽  
Gambiae Genome

Abstract Within the unique Triplo-lethal region (Tpl) of the Drosophila melanogaster genome we have found a cluster of 20 genes encoding a novel family of proteins. This family is also present in the Anopheles gambiae genome and displays remarkable synteny and sequence conservation with the Drosophila cluster. The family is also present in the sequenced genome of D. pseudoobscura, and homologs have been found in Aedes aegypti mosquitoes and in four other insect orders, but it is not present in the sequenced genome of any noninsect species. Phylogenetic analysis suggests that the cluster evolved prior to the divergence of Drosophila and Anopheles (250 MYA) and has been highly conserved since. The ratio of synonymous to nonsynonymous substitutions and the high codon bias suggest that there has been selection on this family both for expression level and function. We hypothesize that this gene family is Tpl, name it the Osiris family, and consider possible functions. We also predict that this family of proteins, due to the unique dosage sensitivity and the lack of homologs in noninsect species, would be a good target for genetic engineering or novel insecticides.

Three new cribrimorph bryozoans (order Cheilostomatida) from the early Miocene of Argentina, with a discussion on spinocystal shield morphologies

2021 ◽  
pp. 1-15
Author(s):  
Juan López-Gappa ◽  
Leandro M. Pérez ◽  
Ana C.S. Almeida ◽  
Débora Iturra ◽  
Dennis P. Gordon ◽  
...  
Keyword(s):  
Type Species ◽  
Systematic Position ◽  
Early Miocene ◽  
Morphological Data ◽  
Fossil Species ◽  
Extant Species ◽  
The Family ◽  
Subjective Synonym

Abstract Bryozoans with calcified frontal shields formed by the fusion of costae, collectively constituting a spinocyst, are traditionally assigned to the family Cribrilinidae. Today, this family is regarded as nonmonophyletic. In the Argentine Cenozoic, cribrilinids were until recently represented by only two fossil species from the Paleocene of Patagonia. This study describes the first fossil representatives of Jolietina and Parafigularia: J. victoria n. sp. and P. pigafettai n. sp., respectively. A fossil species of Figularia, F. elcanoi n. sp., is also described. The material comes from the early Miocene of the Monte León and Chenque formations (Patagonia, Argentina). For comparison, we also provide redescriptions of the remaining extant species of Jolietina: J. latimarginata (Busk, 1884) and J. pulchra Canu and Bassler, 1928a. The systematic position of some species previously assigned to Figularia is here discussed. Costafigularia n. gen. is erected, with Figularia pulcherrima Tilbrook, Hayward, and Gordon, 2001 as type species. Two species previously assigned to Figularia are here transferred to Costafigularia, resulting in C. jucunda n. comb. and C. tahitiensis n. comb. One species of Figularia is reassigned to Vitrimurella, resulting in V. ampla n. comb. The family Vitrimurellidae is here reassigned to the superfamily Cribrilinoidea. The subgenus Juxtacribrilina is elevated to genus rank. Inferusia is regarded as a subjective synonym of Parafigularia. Parafigularia darwini Moyano, 2011 is synonymized with I. taylori Kuklinski and Barnes, 2009, resulting in Parafigularia taylori n. comb. Morphological data suggest that these genera comprise different lineages, and a discussion on the disparities among cribrilinid (sensu lato) spinocysts is provided. UUID: http://zoobank.org/215957d3-064b-47e2-9090-d0309f6c9cd8

Description of a new species of Auriculostoma (Digenea: Allocreadiidae) from Characidium heirmostigmata (Characiformes: Crenuchidae) from Argentina, using morphological and molecular data

2021 ◽  
Vol 95 ◽  
Author(s):  
M.M. Montes ◽  
J. Barneche ◽  
Y. Croci ◽  
D. Balcazar ◽  
A. Almirón ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
National Park ◽  
Molecular Data ◽  
Rrna Gene ◽  
28S Rrna ◽  
The Family ◽  
Parasitological Survey ◽  
Morphological And Molecular Data ◽  
A New Species

Abstract During a parasitological survey of fishes at Iguazu National Park, Argentina, specimens belonging to the allocreadiid genus Auriculostoma were collected from the intestine of Characidium heirmostigmata. The erection of the new species is based on a unique combination of morphological traits as well as on phylogenetic analysis. Auriculostoma guacurarii n. sp. resembles four congeneric species – Auriculostoma diagonale, Auriculostoma platense, Auriculostoma tica and Auriculostoma totonacapanensis – in having smooth and oblique testes, but can be distinguished by a combination of several morphological features, hosts association and geographic distribution. Morphologically, the new species can be distinguished from both A. diagonale and A. platense by the egg size (bigger in the first and smaller in the last); from A. tica by a shorter body length, the genital pore position and the extension of the caeca; and from A. totonacapanensis by the size of the oral and ventral sucker and the post-testicular space. Additionally, one specimen of Auriculostoma cf. stenopteri from the characid Charax stenopterus (Characiformes) from La Plata River, Argentina, was sampled and the partial 28S rRNA gene was sequenced. The phylogenetic analysis revealed that A. guacurarii n. sp. clustered with A. tica and these two as sister taxa to A. cf. stenopteri. The new species described herein is the tenth species in the genus and the first one parasitizing a member of the family Crenuchidae.

Review of Eohiodon (Teleostei: Osteoglossomorpha) from western North America, with a phylogenetic reassessment of Hiodontidae

1997 ◽  
Vol 71 (6) ◽  
pp. 1109-1124 ◽  
Author(s):  
Li Guo-Qing ◽  
Mark V. H. Wilson ◽  
Lance Grande
Keyword(s):  
North America ◽  
Sister Group ◽  
Sensu Stricto ◽  
Valid Species ◽  
Western North America ◽  
Extant Species ◽  
The Family ◽  
Fossil Records ◽  
Fossil Genus ◽  
Freshwater Teleosts

Review of recently collected material of Eohiodon from North America suggests that there are two valid species, E. rosei (Hussakof) and E. woodroffi Wilson. Eohiodon falcatus Grande is identical to E. woodruffi in known skeletal features and nearly all meristic features and is treated as a junior synonym of the latter. The fossil genus Eohiodon Cavender differs from Hiodon Lesueur, which is known from both fossil and extant species, in numerous meristic and osteological features. The caudal skeleton in Eohiodon is nearly identical to that in Hiodon.The traditionally accepted Notopteroidei, containing Lycopteridae, Hiodontidae, and Notopteridae, is a polypheletic group. The Asian fossil family Lycopteridae is not more closely related to Hiodontidae than it is to other taxa in the Osteoglossomorpha, but is sister to all other Osteoglossomorpha. The Hiodontiformes sensu stricto, including only the family Hiodontidae, is the sister-group of the Osteoglossiformes. This family is not more closely related to notopterids than to other taxa in Osteoglossiformes. The Notopteridae are most closely related to the Mormyroidea; together they and the fossil family Ostariostomidae constitute the sister-group of the Osteoglossoidei.Fossil records of Hiodontiformes sensu stricto and Notopteroidei indicate a widespread pre-Neogene biogeographic range of these freshwater teleosts, suggesting that extinction must have been involved in the Cenozoic evolution of these two osteoglossomorph sublineages.

Phylogeny accurately predicts behaviour in Indian Ocean Clitaetra spiders (Araneae:Nephilidae)

2009 ◽  
Vol 23 (3) ◽  
pp. 193 ◽  
Author(s):  
Matjaž Kuntner ◽  
Ingi Agnarsson
Keyword(s):  
South Africa ◽  
Phylogenetic Analysis ◽  
Indian Ocean ◽  
Species Level ◽  
Web Architecture ◽  
Evolutionarily Conserved ◽  
The Family ◽  
Behavioural Biology

Phylogenies are underutilised, powerful predictors of traits in unstudied species. We tested phylogenetic predictions of web-related behaviour in Clitaetra Simon, 1889, an Afro-Indian spider genus of the family Nephilidae. Clitaetra is phylogenetically sister to all other nephilids and thus important for understanding ancestral traits. Behavioural information on Clitaetra has been limited to only C. irenae Kuntner, 2006 from South Africa which constructs ladder webs. A resolved species-level phylogeny unambiguously optimised Clitaetra behavioural biology and predicted web traits in five unstudied species and a uniform intrageneric nephilid web biology. We tested these predictions by studying the ecology and web biology of C. perroti Simon, 1894 on Madagascar and C. episinoides Simon, 1889 on Mayotte. We confirm predicted arboricolous web architecture in these species. The expected ontogenetic allometric transition from orbs in juveniles to elongate ladder webs in adults was statistically significant in C. perroti, whereas marginally not significant in C. episinoides. We demonstrate the persistence of the temporary spiral in finished Clitaetra webs. A morphological and behavioural phylogenetic analysis resulted in unchanged topology and persisting unambiguous behavioural synapomorphies. Our results support the homology of Clitaetra hub reinforcement with the nephilid hub-cup. In Clitaetra, behaviour was highly predictable and remained consistent with new observations. Our results confirm that nephilid web biology is evolutionarily conserved within genera.

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