Characterization and analysis of soils using mid-infrared partial least-squares .2. Correlations with some laboratory data

Soil Research ◽  
1995 ◽  
Vol 33 (4) ◽  
pp. 637 ◽  
Author(s):  
LJ Janik ◽  
JO Skjemstad

Infrared partial least squares (PLS) analysis is shown to provide a simple, rapid chemometric technique for the simultaneous analysis of soil properties. The method is capable of extracting both qualitative and quantitative information from soil spectra. A number of the mineral and organic components which are responsible for certain soil properties have been identified and the prediction of these properties assessed. Diffuse reflectance infrared Fourier-transform (DRIFT) spectra of whole soils were recorded to form a large training data set. The spectral information from this set was compressed into a small number of subspectra (called weight loadings) which contained positive and negative peaks reflecting correlations between the soil mineral and organic components and corresponding analytical data. Positive peaks in the weight loadings corresponding to organic components including alkyl, carboxylic and amide species were highly correlated with OC and N. Likewise, smectite, kaolinite and gibbsite clay minerals, together with organic alkyl and carboxylic species, contributed either positively or negatively to pH, sum of cations and clay content. Positive peaks due to calcite were well resolved in the first carbonate weight loading. Quartz was identified as an 'interference' for all analyses, with a series of negative peaks in the weight loadings. Implications were that quartz exerted a strong spectral signal for the majority of soil spectra, although it was not directly related to particular analyses. The usual PLS method, in which there is assumed to be a linear relationship between the loading intensities and soil property values, was found to give nonlinear prediction regression. The nonlinearity was assumed to be due to the effects of nonlinear response of the DRIFT signal and to significant compositional variability between calibration samples with high and low analyte concentrations. An alternative strategy of using a locally linear PLS model was tested, where small subsets of the total span of analytical values were independently used for PLS analysis. This approach improved prediction linearity and precision improved significantly for most analyses. The PLS method was thus shown to provide a useful surrogate technique for the study of soils, with which the PLS analysis of a single spectrum could provide simultaneous qualitative and quantitative information on a number of widely different soil analyses.

2020 ◽  
Vol 12 (11) ◽  
pp. 4384
Author(s):  
Prapasiri Tongsiri ◽  
Wen-Yu Tseng ◽  
Yuan Shen ◽  
Hung-Yu Lai

The soil properties, climate, type of management, and fermentation process critically affect the productivity and quality of tea. In this study, tender tea leaves were collected from central Taiwan, and organic components in their infusions as well as physical and chemical soil properties differentiated using aerial photographs where good (G) and bad (B) growth exhibitions were determined. Eleven physical and chemical soil properties as well as five compounds in tea infusions were analyzed to determine the main factor that affects the growth of these tea trees. The Fleiss’ kappa statistic results revealed that the wet aggregate stability, pH, and exchangeable potassium content exhibit the most significant effect, with scores of 0.86, 0.64, and 0.62, respectively. Soil quality calculated using the mean weight diameter based on 11 soil properties revealed that ~67% of the total score of G is greater than that of B. Generally, contents of total polyphenols (51.67%) and catechins (51.76%) in the infusions of B were greater than those of G. In addition, significant positive correlations between the free amino acids content and soil properties, including pH and copper content, were observed. However, a negative correlation between the free amino acids and flavone contents and most of the soil properties was observed. The survey data set obtained from this study can provide useful information for the improved management of tea plantations.


2019 ◽  
Vol 11 (36) ◽  
pp. 4593-4599
Author(s):  
Shaohui Yu ◽  
Jing Liu

A weighted clustering and pruning of wavelength variables-partial least squares (WCPV-PLS) method was proposed.


2010 ◽  
Vol 09 (supp01) ◽  
pp. 9-22 ◽  
Author(s):  
GUI-NING LU ◽  
XUE-QIN TAO ◽  
ZHI DANG ◽  
WEILIN HUANG ◽  
ZHONG LI

The environmental fate of polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDD/Fs) has become a major issue in recent decades. Quantitative structure–property relationship (QSPR) modeling is a powerful approach for predicting the properties of environmental organic pollutants from their structure descriptors. In this study, QSPR models were established for estimating water solubility (- log S W ) and n-octanol/water partition coefficient ( log KOW) of PCDD/Fs. Quantum chemical descriptors computed with density functional theory at the B3LYP/6-31G(d) level and partial least squares (PLS) analysis with an optimizing procedure were used to generate QSPR models for - log S W and log K OW of PCDD/Fs. Optimized models with high correlation coefficients (R2 > 0.983) were obtained for estimating - log S W and log K OW of PCDD/Fs. Both the internal cross validation test [Formula: see text] and external validation test (R2 > 0.965) results showed that the obtained models had high-precision and good prediction capability. The - log S W } and log K OW values predicted by the obtained models are very close to those observed. The PLS analysis indicated that PCDD/Fs with larger electronic spatial extent (R e ), lower molecular total energy (E T ), and smaller energy gap between the lowest unoccupied and the highest occupied molecular orbitals (E LUMO -E HOMO ) tend to be less soluble in water but more lipophilic.


Symmetry ◽  
2020 ◽  
Vol 12 (12) ◽  
pp. 2099
Author(s):  
Divo Dharma Silalahi ◽  
Habshah Midi ◽  
Jayanthi Arasan ◽  
Mohd Shafie Mustafa ◽  
Jean-Pierre Caliman

With the complexity of Near Infrared (NIR) spectral data, the selection of the optimal number of Partial Least Squares (PLS) components in the fitted Partial Least Squares Regression (PLSR) model is very important. Selecting a small number of PLS components leads to under fitting, whereas selecting a large number of PLS components results in over fitting. Several methods exist in the selection procedure, and each yields a different result. However, so far no one has been able to determine the more superior method. In addition, the current methods are susceptible to the presence of outliers and High Leverage Points (HLP) in a dataset. In this study, a new automated fitting process method on PLSR model is introduced. The method is called the Robust Reliable Weighted Average—PLS (RRWA-PLS), and it is less sensitive to the optimum number of PLS components. The RRWA-PLS uses the weighted average strategy from multiple PLSR models generated by the different complexities of the PLS components. The method assigns robust procedures in the weighing schemes as an improvement to the existing Weighted Average—PLS (WA-PLS) method. The weighing schemes in the proposed method are resistant to outliers and HLP and thus, preserve the contribution of the most relevant variables in the fitted model. The evaluation was done by utilizing artificial data with the Monte Carlo simulation and NIR spectral data of oil palm (Elaeis guineensis Jacq.) fruit mesocarp. Based on the results, the method claims to have shown its superiority in the improvement of the weight and variable selection procedures in the WA-PLS. It is also resistant to the influence of outliers and HLP in the dataset. The RRWA-PLS method provides a promising robust solution for the automated fitting process in the PLSR model as unlike the classical PLS, it does not require the selection of an optimal number of PLS components.


2016 ◽  
Vol 8 (41) ◽  
pp. 7522-7530 ◽  
Author(s):  
David Douglas de Sousa Fernandes ◽  
Valber Elias Almeida ◽  
Licarion Pinto ◽  
Germano Véras ◽  
Roberto Kawakami Harrop Galvão ◽  
...  

This paper proposes a new interval selection approach for PLS-DA modelling, which is developed as an extension of the recently introduced iSPA-PLS method for multivariate calibration.


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