13 Genome scanning reveals regions with increased homozygosity negatively affecting fertility in Pura Raza Español mares

2022 ◽  
Vol 34 (2) ◽  
pp. 240
Author(s):  
N. Laseca ◽  
A. Molina ◽  
Y. Pirosanto ◽  
E. Terán ◽  
A. Encina-Martinez ◽  
...  
Keyword(s):  
Genome Scanning

scholarly journals Prognosis-Determinant Candidate Genes Identified by Whole Genome Scanning in Eyes with Pterygia

2007 ◽  
Vol 48 (8) ◽  
pp. 3566 ◽  
Author(s):  
Chuan-Hui Kuo ◽  
Dai Miyazaki ◽  
Nobuhiko Nawata ◽  
Takeshi Tominaga ◽  
Atsushi Yamasaki ◽  
...  
Keyword(s):  
Candidate Genes ◽  
Whole Genome ◽  
Genome Scanning

scholarly journals In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant

Oncogene ◽  
2005 ◽  
Vol 24 (40) ◽  
pp. 6133-6142 ◽  
Author(s):  
Abdel Aouacheria ◽  
Vincent Navratil ◽  
Wenyu Wen ◽  
Ming Jiang ◽  
Dominique Mouchiroud ◽  
...  
Keyword(s):  
Molecular Characterization ◽  
Light Chain ◽  
In Silico ◽  
Nonsynonymous Snps ◽  
Whole Genome ◽  
Dynein Light Chain ◽  
Genome Scanning

scholarly journals Identification of Common Subpopulations of Non-Sorbitol-Fermenting, β-Glucuronidase-Negative Escherichia coli O157:H7 from Bovine Production Environments and Human Clinical Samples

2004 ◽  
Vol 70 (11) ◽  
pp. 6846-6854 ◽  
Author(s):  
Zhijie Yang ◽  
Joy Kovar ◽  
Jaehyoung Kim ◽  
Joseph Nietfeldt ◽  
David R. Smith ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
High Resolution ◽  
Recent Common Ancestor ◽  
Clinical Samples ◽  
Genome Scanning ◽  
Large Sets ◽  
Marker Test ◽  
Production Environments ◽  
Different Populations ◽  
Phylogenetic Lineages

ABSTRACT Non-sorbitol-fermenting, β-glucuronidase-negative Escherichia coli O157:H7 strains are regarded as a clone complex, and populations from different geographical locations are believed to share a recent common ancestor. Despite their relatedness, high-resolution genotyping methods can detect significant genome variation among different populations. Phylogenetic analysis of high-resolution genotyping data from these strains has shown that subpopulations from geographically unlinked continents can be divided into two primary phylogenetic lineages, termed lineage I and lineage II, and limited studies of the distribution of these lineages suggest there could be differences in their propensity to cause disease in humans or to be transmitted to humans. Because the genotyping methods necessary to discriminate the two lineages are tedious and subjective, these methods are not particularly suited for studying the large sets of strains that are required to systematically evaluate the ecology and transmission characteristics of these lineages. To overcome this limitation, we have developed a lineage-specific polymorphism assay (LSPA) that can readily distinguish between the lineage I and lineage II subpopulations. In the studies reported here, we describe the development of a six-marker test (LSPA-6) and its validation in a side-by-side comparison with octamer-based genome scanning. Analysis of over 1,400 O157:H7 strains with the LSPA-6 demonstrated that five genotypes comprise over 91% of the strains, suggesting that these subpopulations may be widespread.

Restriction Landmark Genome Scanning

2003 ◽  
pp. 053-070 ◽  
Author(s):  
Joseph F. Costello ◽  
Christoph Plass ◽  
Webster K. Cavenee
Keyword(s):  
Genome Scanning ◽  
Restriction Landmark Genome Scanning

Restriction Landmark Genome Scanning

2011 ◽  
pp. 101-112 ◽  
Author(s):  
Hisato Okuizumi ◽  
Tomoko Takamiya ◽  
Yasushi Okazaki ◽  
Yoshihide Hayashizaki
Keyword(s):  
Genome Scanning ◽  
Restriction Landmark Genome Scanning

Restriction landmark genome scanning method using isoschizomers (MspI/HpaII) for DNA methylation analysis

2006 ◽  
Vol 27 (14) ◽  
pp. 2846-2856 ◽  
Author(s):  
Tomoko Takamiya ◽  
Saeko Hosobuchi ◽  
Kenji Asai ◽  
Eiji Nakamura ◽  
Keisuke Tomioka ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Methylation Analysis ◽  
Scanning Method ◽  
Genome Scanning ◽  
Restriction Landmark Genome Scanning ◽  
Dna Methylation Analysis

Novel automated three-dimensional genome scanning based on the nuclear architecture of telomeres

2010 ◽  
Vol 79A (2) ◽  
pp. 159-166 ◽  
Author(s):  
Ludger Klewes ◽  
Clemens Höbsch ◽  
Nir Katzir ◽  
David Rourke ◽  
Yuval Garini ◽  
...  
Keyword(s):  
Three Dimensional ◽  
Nuclear Architecture ◽  
Genome Scanning
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