Association analysis of mitochondrial DNA polymorphisms with oocyte number in pigs

2019 ◽  
Vol 31 (4) ◽  
pp. 805 ◽  
Author(s):  
Hao Liu ◽  
Wenshu Shi ◽  
Dan Wang ◽  
Xingbo Zhao
Keyword(s):  
Association Analysis ◽  
Dna Polymorphisms ◽  
Economic Traits ◽  
Mt Dna ◽  
Oocyte Number ◽  
Porcine Oocyte ◽  
D Loop ◽  
Highly Correlated ◽  
The Relationship ◽  
Mtdna Polymorphism

In pigs, correlations between mitochondrial (mt) DNA polymorphisms and economic traits have been widely reported across and within swine breeds. In fecundity studies, the number of oocytes within ovaries was highly correlated with litter size. However, the effect of mitochondrial polymorphisms on porcine oocyte number remained unclear. In this study, 181 porcine ovaries were collected to analyse the relationship between oocyte number and mtDNA polymorphisms. There were considerable differences in oocyte numbers among different ovaries from commercial pig breeds, ranging from 2.7×105 to 1.3×106. Mitochondrial D-loop sequencing discovered 53 polymorphic sites. Association analysis revealed that 13 variations were associated with the number of oocytes (P<0.05). A C323T polymorphism showed the largest value between the C and T carriers, which differed at 105 oocytes (P<0.05). The 53 polymorphic sites generated 45 haplotypes, which clustered into two haplogroups, A and B. Haplogroup A had a higher number of oocytes than Haplogroup B (P<0.05), whereas Haplotype H6 in Haplogroup A had the highest number of oocytes (~7.5×105) of all haplotypes studied (P<0.05). The results of this study highlight a correlation between mtDNA polymorphisms and oocyte number, and suggest the potential application of mtDNA polymorphism analyses in pig selection and breeding practices.

Do Extra-Platelet Sources Contribute to the Plasma Level of Thrombospondin?

1988 ◽  
Vol 59 (02) ◽  
pp. 273-276 ◽  
Author(s):  
J Dawes ◽  
D A Pratt ◽  
M S Dewar ◽  
F E Preston
Keyword(s):  
Platelet Count ◽  
Background Concentration ◽  
Serum Concentrations ◽  
Bone Marrow Depression ◽  
Serial Sampling ◽  
Control Serum ◽  
Platelet Release ◽  
Highly Correlated ◽  
The Relationship

SummaryThrombospondin, a trimeric glycoprotein contained in the platelet α-granules, has been proposed as a marker of in vivo platelet activation. However, it is also synthesised by a range of other cells. The extraplatelet contribution to plasma levels of thrombospondin was therefore estimated by investigating the relationship between plasma thrombospondin levels and platelet count in samples from profoundly thrombocytopenic patients with marrow hypoplasia, using the platelet-specific α-granule protein β-thromboglobulin as control. Serum concentrations of both proteins were highly correlated with platelet count, but while plasma β-thromboglobulin levels and platelet count also correlated, there was no relationship between the number of platelets and thrombospondin concentrations in plasma. Serial sampling of patients recovering from bone marrow depression indicated that the plasma thrombospondin contributed by platelets is superimposed on a background concentration of at least 50 ng/ml probably derived from a non-platelet source, and plasma thrombospondin levels do not simply reflect platelet release.

scholarly journals Investigating Health Equity and Healthcare Needs among Immigrant Women Using the Association Rule Mining Method

Healthcare ◽  
2021 ◽  
Vol 9 (2) ◽  
pp. 195
Author(s):  
Ming-Hseng Tseng ◽  
Hui-Ching Wu
Keyword(s):  
Association Analysis ◽  
Association Rule ◽  
Association Rule Mining ◽  
Immigrant Women ◽  
Parental Knowledge ◽  
Physical Factors ◽  
Rule Mining ◽  
Socioeconomic Characteristics ◽  
Healthcare Needs ◽  
The Relationship

Equitable access to healthcare services is a major concern among immigrant women. Thus, this study investigated the relationship between socioeconomic characteristics and healthcare needs among immigrant women in Taiwan. The secondary data was obtained from “Survey of Foreign and Chinese Spouses’ Living Requirements, 2008”, which was administered to 5848 immigrant women by the Ministry of the Interior, Taiwan. Additionally, descriptive statistics and significance tests were used to analyze the data, after which the association rule mining algorithm was applied to determine the relationship between socioeconomic characteristics and healthcare needs. According to the findings, the top three healthcare needs were providing medical allowances (52.53%), child health checkups (16.74%), and parental knowledge and pre- and post-natal guidance (8.31%). Based on the association analysis, the main barrier to the women’s healthcare needs was “financial pressure”. This study also found that nationality, socioeconomic status, and duration of residence were associated with such needs, while health inequality among aged immigrant women was due to economic and physical factors. Finally, the association analysis found that the women’s healthcare problems included economic, socio-cultural, and gender weakness, while “economic inequality” and “women’s health” were interrelated.

Prediction of Hearing Threshold in Infants Using Auditory Steady-State Evoked Potentials

2002 ◽  
Vol 13 (05) ◽  
pp. 236-245 ◽  
Author(s):  
Gary Rance ◽  
Field Rickards
Keyword(s):  
Hearing Loss ◽  
Steady State ◽  
Hearing Threshold ◽  
Normal Hearing ◽  
Older Children ◽  
Behavioral Thresholds ◽  
Similar Threshold ◽  
Highly Correlated ◽  
The Relationship ◽  
Audiometric Test

This retrospective study examines the relationship between auditory steady-state evoked potential (ASSEP) thresholds determined in infancy and subsequently obtained behavioral hearing levels in children with normal hearing or varying degrees of sensorineural hearing loss. Overall, the results from 211 subjects showed that the two test techniques were highly correlated, with Pearson r values exceeding .95 at each of the audiometric test frequencies between 500 and 4000 Hz. Analysis of the findings for babies with significant hearing loss (moderate to profound levels) showed similar threshold relationships to those obtained in previous studies involving adults and older children. The results for infants with normal or near-normal hearing did, however, differ from those reported for older subjects, with behavioral thresholds typically 10 to 15 dB better than would have been predicted from their ASSEP levels.

scholarly journals Genetic Diversities and Historical Dynamics of Native Ethiopian Horse Populations (Equus caballus) Inferred from Mitochondrial DNA Polymorphisms

Genes ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 155
Author(s):  
Kefena Effa ◽  
Sonia Rosenbom ◽  
Jianlin Han ◽  
Tadelle Dessie ◽  
Albano Beja-Pereira
Keyword(s):  
Genetic Diversity ◽  
Mitochondrial Dna ◽  
Genetic Differentiation ◽  
Sequence Divergence ◽  
Dna Polymorphisms ◽  
Base Pairs ◽  
Feral Horses ◽  
Domestic Horses ◽  
D Loop ◽  
Diversity Estimates

Matrilineal genetic diversity and relationship were investigated among eight morphologically identified native Ethiopian horse populations using polymorphisms in 46 mtDNA D-loop sequences (454 base pairs). The horse populations identified were Abyssinian, Bale, Borana, Horro, Kafa, Kundido feral horses, Ogaden and Selale. Mitochondrial DNA D-loop sequences were characterized by 15 variable sites that defined five different haplotypes. All genetic diversity estimates, including Reynolds’ linearized genetic distance, genetic differentiation (FST) and nucleotide sequence divergence (DA), revealed a low genetic differentiation in native Ethiopian horse populations. However, Kundido feral and Borana domestic horses were slightly diverged from the rest of the Ethiopian horse populations. We also tried to shed some light on the matrilineal genetic root of native Ethiopian horses from a network constructed by combining newly generated haplotypes and reference haplotypes deposited in the GenBank for Eurasian type Turkish Anatolian horses that were used as a genetic conduit between Eurasian and African horse populations. Ninety-two haplotypes were generated from the combined Ethio-Eurasian mtDNA D-loop sequences. A network reconstructed from the combined haplotypes using Median-Joining algorithm showed that haplotypes generated from native Ethiopian horses formed separate clusters. The present result encourages further investigation of the genetic origin of native African horses by retrieving additional mtDNA sequences deposited in the GenBank for African and Eurasian type horses.

scholarly journals Generation of an Isogenic Collection of Yeast Actin Mutants and Identification of Three Interrelated Phenotypes

Genetics ◽  
2001 ◽  
Vol 157 (2) ◽  
pp. 533-543
Author(s):  
Johanna L Whitacre ◽  
Dana A Davis ◽  
Kurt A Toenjes ◽  
Sharon M Brower ◽  
Alison E M Adams
Keyword(s):  
Crystal Structure ◽  
Growth Rates ◽  
Small Region ◽  
Wild Type ◽  
Large Collection ◽  
Growth Defects ◽  
Cytoskeletal Function ◽  
Highly Correlated ◽  
The Relationship ◽  
Mutant Cells

Abstract A large collection of yeast actin mutations has been previously isolated and used in numerous studies of actin cytoskeletal function. However, the various mutations have been in congenic, rather than isogenic, backgrounds, making it difficult to compare the subtle phenotypes that are characteristic of these mutants. We have therefore placed 27 mutations in an isogenic background. We used a subset of these mutants to compare the degree to which different actin alleles are defective in sporulation, endocytosis, and growth on NaCl-containing media. We found that the three phenotypes are highly correlated. The correlations are specific and not merely a reflection of general growth defects, because the phenotypes are not correlated with growth rates under normal conditions. Significantly, those actin mutants exhibiting the most severe phenotypes in all three processes have altered residues that cluster to a small region of the actin crystal structure previously defined as the fimbrin (Sac6p)-binding site. We examined the relationship between endocytosis and growth on salt and found that shifting wild-type or actin mutant cells to high salt reduces the rate of α-factor internalization. These results suggest that actin mutants may be unable to grow on salt because of additive endocytic defects (due to mutation and salt).

Visualisation of different harmonisations varying in mode, consonance & dissonance

2021 ◽  
Author(s):  
Konstantinos Giannos ◽  
George Athanasopoulos ◽  
Emilios Cambouropoulos
Keyword(s):  
Past Research ◽  
Auditory Stimuli ◽  
Modal Interaction ◽  
Variable Roughness ◽  
The Subject ◽  
Highly Correlated ◽  
Listening Task ◽  
The Relationship ◽  
Tonal Stimuli ◽  
Musical Elements

Visual associations with auditory stimuli have been the subject of numerous studies. Colour, shape, size, and several other parameters have been linked to musical elements like timbre and pitch. In this paper we aim to examine the relationship between harmonisations with varying degrees of dissonance and visual roughness. Based on past research in which high sensory dissonance was associated with angular shapes, we argued that non-tonal and highly dissonant harmonisations will be associated with angular and rough images, while more consonant stimuli will be associated with images of low visual roughness. A fixed melody was harmonised in 7 different styles, including highly tonal, non-tonal, and random variations. Through a listening task, musically trained participants rated the stimuli in terms of enjoyment, familiarity, and matched them to images of variable roughness. The overall consonance of the stimuli was calculated using two distinct models (Wang et al., 2013; Harrison & Pearce, 2020) and a variant of the aggregate dyadic consonance index (Huron, 1994). Our results demonstrate that dissonance, as calculated by all models, was highly correlated with visual roughness, and enjoyment and familiarity followed expected patterns compared to tonal and non-tonal stimuli. In addition to sensory dissonance, however, it appears that other factors, such as the typicality of chord progressions and the sense of tonality may also influence this cross-modal interaction.

Threshold for muscle lactate accumulation during progressive exercise

1989 ◽  
Vol 66 (6) ◽  
pp. 2710-2716 ◽  
Author(s):  
J. Chwalbinska-Moneta ◽  
R. A. Robergs ◽  
D. L. Costill ◽  
W. J. Fink
Keyword(s):  
Blood Lactate ◽  
Bicycle Ergometer ◽  
Exercise Tests ◽  
Muscle Lactate ◽  
Lactate Accumulation ◽  
Ergometer Exercise ◽  
Progressive Exercise ◽  
Blood Lactate Accumulation ◽  
Highly Correlated ◽  
The Relationship

The purpose of this study was to investigate the relationship between muscle and blood lactate concentrations during progressive exercise. Seven endurance-trained male college students performed three incremental bicycle ergometer exercise tests. The first two tests (tests I and II) were identical and consisted of 3-min stage durations with 2-min rest intervals and increased by 50-W increments until exhaustion. During these tests, blood was sampled from a hyperemized earlobe for lactate and pH measurement (and from an antecubital vein during test I), and the exercise intensities corresponding to the lactate threshold (LT), individual anaerobic threshold (IAT), and onset of blood lactate accumulation (OBLA) were determined. The test III was performed at predetermined work loads (50 W below OBLA, at OBLA, and 50 W above OBLA), with the same stage and rest interval durations of tests I and II. Muscle biopsies for lactate and pH determination were taken at rest and immediately after the completion of the three exercise intensities. Blood samples were drawn simultaneously with each biopsy. Muscle lactate concentrations increased abruptly at exercise intensities greater than the “below-OBLA” stage [50.5% maximal O2 uptake (VO2 max)] and resembled a threshold. An increase in blood lactate and [H+] also occurred at the below-OBLA stage; however, no significant change in muscle [H+] was observed. Muscle lactate concentrations were highly correlated to blood lactate (r = 0.91), and muscle-to-blood lactate ratios at below-OBLA, at-OBLA, and above-OBLA stages were 0.74, 0.63, 0.96, and 0.95, respectively.(ABSTRACT TRUNCATED AT 250 WORDS)

Meat qualities in the sheep with special reference to Scottish breeds and crosses. I

1939 ◽  
Vol 29 (4) ◽  
pp. 544-626 ◽  
Author(s):  
H. Pálsson
Keyword(s):  
Scientific Basis ◽  
Accurate Estimate ◽  
Quantitative Composition ◽  
Carcass Quality ◽  
Strongly Correlated ◽  
Precise Measure ◽  
Total Fat ◽  
Highly Correlated ◽  
High Degree ◽  
The Relationship

1. By establishing the relationship between linear carcass measurements and the quantitative composition of the carcass in terms of bone, muscle and fat, we have provided a scientific basis for the use of many measurements hitherto only presumed to provide an index to carcass quality.2. External carcass measurements are correlated with weight of the skeleton. The most useful for this purpose are length of tibia + tarsus and length of the fore-cannon.3. As indices of muscle, external measures are only of indirect value. Thus, both F – T and G/F × 100 are strongly correlated with weight of muscle as a percentage of skeletal weight.4. Similarly, F provides an index of fat, being negatively correlated with fat as a percentage of bone.5. For muscle and fat internal measures permit a more precise estimate to be made. A + B is the best index of the former while C + J + Y provide the most accurate estimate of the weight of fat.6. Still better indices for muscle and fat are provided by suitable combinations of external and internal measurements. Thus L/10 + A + B is very highly correlated with the weight of muscle, and L/10 × (C + J + Y) is the best index of fat in the hoggets. For bone, a most efficient single index is shown to be the weight of the fore-cannon bone.7. The weight of the skeleton can be estimated with a high degree of accuracy from the weight of the bones in either one leg or loin. Both these joints combined, however, provide a still better estimate.8. The muscle in one leg or loin + leg provides an excellent index of the weight of muscle in the whole carcass.9. The fat in one leg, loin, or both these joints combined provides a good index of the weight of the total fat in the carcass. Both joints combined give the most precise measure.10. The value of certain measurements which are not necessarily associated with the quantity of the major tissues of the carcass, but which nevertheless have important qualitative significance, is emphasized.

THE RELATIONSHIP BETWEEN SERUM TESTOSTERONE LEVELS, SEX AND TEAT-SEEKING ABILITY OF NEWBORN PIGLETS

1985 ◽  
Vol 65 (3) ◽  
pp. 627-630 ◽  
Author(s):  
L. A. BATE ◽  
R. R. HACKER ◽  
M. B. KREUKNIET
Keyword(s):  
Body Weight ◽  
Detrimental Effect ◽  
Serum Testosterone ◽  
Maternal Serum ◽  
Blood Samples ◽  
Male And Female ◽  
Newborn Piglets ◽  
Baseline Levels ◽  
Highly Correlated ◽  
The Relationship

Blood samples were collected from five pregnant sows from day 111 postbreeding to farrowing and from their piglets at regular intervals between birth and 48 h. The time between birth and first suckling (BTS) was recorded for each piglet. Maternal serum testosterone (T) levels were detectable only at the beginning of parturition and were highly correlated (r = 0.83) with litter BTS. Serum T levels of male and female piglets were similar at birth. In male piglets the T levels increased to a peak 2 h after birth and decreased gradually thereafter. In contrast, the T levels of female piglets declined rapidly after birth to baseline levels. The BTS of female piglets was shorter than that of male piglets. Body weight of males was higher than that of females and was influenced by litter size. These results suggest that the higher serum T levels of male piglets may have a detrimental effect on their teat-seeking ability. Key words: Serum testosterone, sex, piglets, teat-seeking ability, sow

Agreement between i-STAT and YSI 2300 devices to determine lactate concentrations in dogs undergoing exercise

2016 ◽  
Vol 12 (2) ◽  
pp. 75-82 ◽  
Author(s):  
C. Berkman ◽  
M.C. Pereira ◽  
K.B. Nardi ◽  
G.T. Pereira ◽  
O.A.B. Soares ◽  
...  
Keyword(s):  
Venous Blood ◽  
Lactate Concentration ◽  
Intense Exercise ◽  
Blood Samples ◽  
Handheld Device ◽  
Clinical Evaluations ◽  
Small Constant ◽  
Constant Bias ◽  
Highly Correlated ◽  
The Relationship

Little information is available comparing the i-STAT and the YSI 2300 Stat Plus devices to determine the lactate concentration [Lac] in dogs undergoing intense exercise. The reproducibility of the YSI 2300 for quantifying the [Lac] in canine blood [Lac]b and plasma [Lac]p samples has been observed. In addition, the i-STAT handheld device was used to quantify [Lac] in dogs subjected to exercise, and the results were compared with that of YSI 2300. Venous blood samples of Beagle and American Pit Bull Terrier dogs were obtained during an intense exercise training on a treadmill. [Lac]p and [Lac]b were quantified using the YSI 2300 instrument to determine the reproducibility of the results. A total of 52 specimens were compared for both plasma and whole blood. For comparing the devices (YSI 2300 vs i-STAT), 96 samples were used. Ordinary least products regression, the correlation coefficient, and Bland-Altman plots were used to assess the agreement of using the i-STAT device. The relationship between duplicate measurements of both [Lac]b and [Lac]p by YSI 2300 was strong (r=0.99). A correlation between the data obtained using the i-STAT and YSI 2300 instruments was observed for both the [Lac]p (r=0.97) and [Lac]b (r=0.88). The i-STAT exhibited a small constant bias (-0.25 mmol/l) compared to YSI 2300 ([Lac]b). There were proportional biases of 0.89 mmol/l for [Lac]p and 1.22 mmol/l for [Lac]b when using YSI 2300 vs i-STAT. We confirmed the reproducibility of the YSI 2300 for canine lactate blood/plasma samples. The results obtained by the i-STAT and YSI 2300 analyser were highly correlated, but a small constant bias was observed between them. The i-STAT device can be used in clinical evaluations, and it is also adequate for designing and monitoring fitness programmes.

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