scholarly journals 'Superbull' males: what role do they play and what drives their appearance within the Doryteuthis gahi Patagonian Shelf population?

2019 ◽  
Vol 70 (12) ◽  
pp. 1805 ◽  
Author(s):  
Jessica B. Jones ◽  
Graham J. Pierce ◽  
Paul Brickle ◽  
Zhanna N. Shcherbich ◽  
Alexander I. Arkhipkin

Cephalopod populations exhibit high variability in life history characteristics, such as longevity and size-at-age. The aim of this study was to understand how characteristics of a newly described ‘superbull’ male morph in Doryteuthis gahi populations (Patagonian Shelf) arise and whether there is a selective advantage. At the population level, it is speculated that superbulls provide temporal and spatial connectivity, but individual benefit is less obvious. Age structure and reproductive potential of males was investigated to determine whether superbulls could provide connectivity. Environmental variables affecting size-at-age were explored to ascertain whether morphological differences were primarily phenotypically driven. Superbulls from the autumn spawning cohort were significantly older than the residual population, with added longevity potentially leading to spawning with the following cohort. A reduction in relative testis weight was apparent in superbulls, but spermatophore production remained high. Generalised additive mixed models indicated temperature, location and hatch year had significant effects on size-at-age. Weak correlations between warm El Niño–Southern Oscillation phases and superbull abundance were found. The results suggest that superbulls provide temporal connectivity and arise through phenotypic plasticity, likely providing connectivity as a side effect of body shape and size rather than a genetically selected advantage.

2014 ◽  
Vol 71 (7) ◽  
pp. 1717-1727 ◽  
Author(s):  
A. Jason Phillips ◽  
Lorenzo Ciannelli ◽  
Richard D. Brodeur ◽  
William G. Pearcy ◽  
John Childers

Abstract This study investigated the spatial distribution of juvenile North Pacific albacore (Thunnus alalunga) in relation to local environmental variability [i.e. sea surface temperature (SST)], and two large-scale indices of climate variability, [the Pacific Decadal Oscillation (PDO) and the Multivariate El Niño/Southern Oscillation Index (MEI)]. Changes in local and climate variables were correlated with 48 years of albacore troll catch per unit effort (CPUE) in 1° latitude/longitude cells, using threshold Generalized Additive Mixed Models (tGAMMs). Model terms were included to account for non-stationary and spatially variable effects of the intervening covariates on albacore CPUE. Results indicate that SST had a positive and spatially variable effect on albacore CPUE, with increasingly positive effects to the North, while PDO had an overall negative effect. Although albacore CPUE increased with SST both before and after a threshold year of 1986, such effect geographically shifted north after 1986. This is the first study to demonstrate the non-stationary spatial dynamics of albacore tuna, linked with a major shift of the North Pacific. Results imply that if ocean temperatures continue to increase, US west coast fisher communities reliant on commercial albacore fisheries are likely to be negatively affected in the southern areas but positively affected in the northern areas, where current albacore landings are highest.


2015 ◽  
Author(s):  
Giulio Caravagna ◽  
Alex Graudenzi ◽  
DANIELE RAMAZZOTTI ◽  
Rebeca Sanz-Pamplona ◽  
Luca De Sano ◽  
...  

The genomic evolution inherent to cancer relates directly to a renewed focus on the voluminous next generation sequencing (NGS) data, and machine learning for the inference of explanatory models of how the (epi)genomic events are choreographed in cancer initiation and development. However, despite the increasing availability of multiple additional -omics data, this quest has been frustrated by various theoretical and technical hurdles, mostly stemming from the dramatic heterogeneity of the disease. In this paper, we build on our recent works on "selective advantage" relation among driver mutations in cancer progression and investigate its applicability to the modeling problem at the population level. Here, we introduce PiCnIc (Pipeline for Cancer Inference), a versatile, modular and customizable pipeline to extract ensemble-level progression models from cross-sectional sequenced cancer genomes. The pipeline has many translational implications as it combines state-of-the-art techniques for sample stratification, driver selection, identification of fitness-equivalent exclusive alterations and progression model inference. We demonstrate PiCnIc's ability to reproduce much of the current knowledge on colorectal cancer progression, as well as to suggest novel experimentally verifiable hypotheses.


2016 ◽  
Vol 113 (28) ◽  
pp. E4025-E4034 ◽  
Author(s):  
Giulio Caravagna ◽  
Alex Graudenzi ◽  
Daniele Ramazzotti ◽  
Rebeca Sanz-Pamplona ◽  
Luca De Sano ◽  
...  

The genomic evolution inherent to cancer relates directly to a renewed focus on the voluminous next-generation sequencing data and machine learning for the inference of explanatory models of how the (epi)genomic events are choreographed in cancer initiation and development. However, despite the increasing availability of multiple additional -omics data, this quest has been frustrated by various theoretical and technical hurdles, mostly stemming from the dramatic heterogeneity of the disease. In this paper, we build on our recent work on the “selective advantage” relation among driver mutations in cancer progression and investigate its applicability to the modeling problem at the population level. Here, we introduce PiCnIc (Pipeline for Cancer Inference), a versatile, modular, and customizable pipeline to extract ensemble-level progression models from cross-sectional sequenced cancer genomes. The pipeline has many translational implications because it combines state-of-the-art techniques for sample stratification, driver selection, identification of fitness-equivalent exclusive alterations, and progression model inference. We demonstrate PiCnIc’s ability to reproduce much of the current knowledge on colorectal cancer progression as well as to suggest novel experimentally verifiable hypotheses.


2021 ◽  
Author(s):  
Juliana A. Souza ◽  
Augusto A. V. Flores

Abstract Connectivity is paramount for population stability, but the mechanisms underlying the distribution of populated patches and how they affect reproductive connectivity and individual fitness remain elusive. Here, we mapped the distribution of sand dollars – as habitat patches for obligate-commensal pea crabs – at several sites. At occupied patches, we assessed whole-crab population structure and the fitness of ovigerous females. While sand-dollar supply did not limit the size of crab populations, overall crab abundance limited reproductive connectivity and the potential for offspring production. However, except for sites of extremely low and high connectivity, crab aggregations at sand-dollar clusters countervailed the overall random distribution of sand-dollar populations, greatly enhancing the reproductive potential of whole-crab populations. Crab interactions, likely controlled by larger females, added to reproductive connectivity by increasing the frequency of mating pairs in hosts. Differently from the population-level case, effects of crab abundance on individual fitness were dual and only detectable when abundance was lowest (positive) or highest (negative), so that fitness remained high at intermediate crab abundance, decreasing when it became either too low (e.g. Allee effects) or too high (e.g. energetic costs of intraspecific competition). This study indicates that connectivity may affect different levels of biological organization in specific ways.


2017 ◽  
Vol 15 (1) ◽  
Author(s):  
Henrique Lazzarotto ◽  
Thiago Barros ◽  
José Louvise ◽  
Érica Pellegrini Caramaschi

ABSTRACT We explored patterns of phenotypic variation in Hemigrammus coeruleus from the Unini River basin, a blackwater river in the Brazilian Amazon. Geometric morphometrics was used to evaluate variation in body shape among populations from four tributaries (UN2-UN5). We found no evidence for sexual dimorphism in body size and shape. However, morphological differences among populations were detected as the analyses recovered significant groups corresponding to each sub-basin, with some overlap among them. The populations from UN2, UN3 and UN5 had more elongate bodies than fish from UN4. The most morphologically divergent population belonged to UN4, the tributary with the most divergent environmental conditions and the only one with seasonally-muddy waters. The morphological variation found among these populations is likely due to phenotypic plasticity or local adaptation, arising as a product of divergent ecological selection pressures among sub-basins. This work constitutes one of the first to employ a population-level geometric morphometric approach to assess phenotypic variation in Amazonian fishes. This method was able to distinguish subtle differences in body morphology, and its use with additional species can bring novel perspectives on the evaluation of general patterns of phenotypic differentiation in the Amazon.


1975 ◽  
Vol 32 (7) ◽  
pp. 995-1004 ◽  
Author(s):  
Seiji Ohsumi ◽  
Yasuaki Masaki

New data from Japanese catches in Antarctic seasons 1971–72 and 1972–73 are used to calculate biological parameters. Determinations are: fetal sex ratio (52.0% females); sex ratio in catch (54.1% females); [Formula: see text], males (27.9 ft), females (29.5 ft); age at asymptotic body length, males (18–20 yr), females (20–22 yr); male sexual maturity at testis weight (0.4 kg); length at beginning of sexual maturity, males (21 ft), females (24 ft) and at 50% sexually mature, males (23.6 ft), females (26.2 ft); age at sexual maturity, females (6 yr); apparent pregnancy rate (89.5%); annual ovulation rate (0.866); litter size (1.007); natural mortality coefficient of sexually mature sample (0.127) and of sexually immature sample (0.213); age at recruitment (6 yr); and rate of recruitment in virgin population (0.119).


Paleobiology ◽  
2010 ◽  
Vol 36 (4) ◽  
pp. 641-657 ◽  
Author(s):  
Vincent Lazzari ◽  
Jean-Pierre Aguilar ◽  
Jacques Michaux

Recent progresses in our knowledge of mouse odontogenesis have enhanced rodent tooth morphology as a model for Evo-Devo studies. Deciphering the connection between macroevolution and microevolution, however, especially in the case of mammalian teeth, requires examples to illustrate how morphological differences among species, or higher taxa, can stem from population-level processes. In this paper we use paleontological material to study intraspecific variation of tooth morphology in the late Miocene species Progonomys clauzoni, over a short span of geological time in a restricted area. Progonomys is of particular interest as a stem genus of all murine rodents (Old World rats and mice). We use morphometrical and statistical methods to illustrate how change in the amplitude in variation at the population level through geological time is associated with the emergence of new characters. Some of these new characters, including functional ones, become fixed in parallel in distinct murine lineages. Nine million years ago, Progonomys clauzoni displayed variational properties of the developmental system shared by the Murinae, which can also explain some singular tooth characteristics that now are scattered among the diverse lineages. Further morphometric studies, however, are necessary to explain how the variety of cusp patterns observed in Progonomys clauzoni can be explained by developmental properties.


Genetics ◽  
1999 ◽  
Vol 151 (2) ◽  
pp. 653-665 ◽  
Author(s):  
Harmit S Malik ◽  
Thomas H Eickbush

Abstract R1 and R2 retrotransposable elements are stable components of the 28S rRNA genes of arthropods. While each retrotransposition event leads to incremental losses of rDNA unit expression, little is known about the selective consequences of these elements on the host genome. Previous reports suggested that in the abnormal abdomen (aa) phenotype of Drosophila mercatorum, high levels of rDNA insertions (R1) in conjunction with the under-replication locus (ur), enable the utilization of different ecological conditions via a population level shift to younger age. We have sequenced the R1 and R2 elements of D. mercatorum and show that the levels of R1- and R2-inserted rDNA units were inaccurately scored in the original studies of aa, leading to several misinterpretations. In particular, contrary to earlier reports, aa flies differentially underreplicate R1- and R2-inserted rDNA units, like other species of Drosophila. However, aa flies do not undergo the lower level of underreplication of their functional rDNA units (general underreplication) that is seen in wild-type strains. The lack of general underreplication is expected to confer a selective advantage and, thus, can be interpreted as an adaptation to overcome high levels of R1 and R2 insertions. These results allow us to reconcile some of the apparently contradictory effects of aa and the bobbed phenotype found in other species of Drosophila.


1947 ◽  
Vol 38 (3) ◽  
pp. 405-430 ◽  
Author(s):  
C. G. Johnson ◽  
W. H. Walton

In order to assess the potential effectiveness of DDT spray against mosquito larvae living under natural conditions and to determine the characteristics of the most effective form of spray, the variables considered were, area dosage of DDT, oil solutions compared with oil-in-water emulsions, concentration of DDT in the spray liquid, and drop size.Spraying was carried out over small (20 ft.×40 ft.) areas of canal harbouring larvae of Anopheles maculipennis var. messeae, and A. claviger. The canal was densely packed with vegetation. The central channel was overgrown with Potomogeton natans, so dense that in some regions there was more area of leaf than of open water surface, and in places there were large masses of floating algae (a coarse species of Spirogyra). At the edge of the canal near the bank there was a margin of reeds averaging about 4 ft. wide, and from 1 to 4 ft. in height.Spraying was carried out with a specially designed spinning disc atomiser giving drops of nearly uniform size and enabling drop-size and dosage delivered to be independently varied over a wide range. The range of DDT dosages investigated was from 4 g./acre to 80 g./acre, delivered in solutions or emulsions of approximately 0·5 per cent. and 5 per cent. concentration and drop sizes of 0·4 and 1 mm. diameter. Assessment of surface dosage in relation to delivered dosage, by spraying dyed solutions, showed that about 30 per cent. of the smaller drops were lost in the wind, but that there was no appreciable loss of the coarser spray.For 5 per cent. oil solutions of DDT drop size in the range 0·4 to 1 mm. diameter had no effect on the kill, except at low dosages (< 10 g. DDT/acre) when the greater wind loss of small drops produced variable results. Tests on the effect of drop size were not carried out with emulsions.From the point of view of larvicidal action, the experiments have not shown that is advantageous to distribute DDT in high dilution. 4·3 per cent. DDT oil solution sprayed at 10 g. DDT/acre actually gave a slightly higher mortality than 0·43 per cent, solution at the same dosage area of DDT, but the difference may not be significant owing to uncontrollable variables. Under the conditions of these trials, both oil solutions were superior to 0·43 per cent. AMSO emulsions. Experiments on the effect of concentration at constant area dosage were made only in the reed margin of the canal and data were not obtained for open water.In the centre of the canal, mortalities greater than 90 per cent, were obtained for both oil solutions and AMSO emulsions at delivered dosages greater than 10 g. DDT/acre, the oil solution being slightly superior. In the reed margin the kill dropped sharply with AMSO emulsions at dosages below 40 g. DDT/acre, the fall-off was much less marked with oil solution. From considerations of the average mortality in all areas, a delivered dosage of 40 g. DDT/acre (small drops) or estimated surface dosage of approximately 30 g. DDT/acre, appears the optimum for economical usage of DDT.When areas were sprayed the first two larval stages suffered a higher mortality compared with the later larval stages and pupae, and the proportion of pupae and later instars thus rose sharply.There was no evidence that residual lethal effects of oil films extended beyond three days. The initial kill in these trials was followed by a very low population level, due, it is thought, to a natural decline in the reproductive potential of the population.


2017 ◽  
Vol 51 (1) ◽  
pp. 37-44 ◽  
Author(s):  
S. V. Mezhzherin ◽  
T. V. Salyy ◽  
A. A. Tsyba

Abstract Comparison of reproductive parameters in several Cobitis forms with different ploidy shows that the maximum fertility is found in diploid Cobitis, the triploids are less fertile and the tetraploids even less fecund. The latter reach maximum values of size and weight indicators but minimum number of eggs, the smallest size of the ovaries but the biggest eggs. Nevertheless, the combined reproductive potential of polyploid females is higher than of diploid spiny loaches with equal ratios of males to females in populations. The obvious reasons for the successful expansion of polyploid individuals of the spiny loaches are both their higher fertility at the population level and the changes in environmental conditions associated with the regulation of all major rivers in Ukraine in the 1960-1970s.


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