Lake and species specific patterns of non-diadromous recruitment in amphidromous fish: the importance of local recruitment and habitat requirements

2017 ◽  
Vol 68 (12) ◽  
pp. 2315 ◽  
Author(s):  
Andy S. Hicks ◽  
Matt G. Jarvis ◽  
Bruno O. David ◽  
Jonathan M. Waters ◽  
Marc D. Norman ◽  
...  
Keyword(s):  
Life Histories ◽  
Larval Fish ◽  
Early Life History ◽  
Migratory Species ◽  
Pelagic Habitat ◽  
Dominant Process ◽  
Local Recruitment ◽  
Species Specific ◽  
Management And Conservation

Understanding migratory life histories is critical for the effective management and conservation of migratory species. However, amphidromous migrations (fish hatch in streams, immediately migrate to the sea for a feeding period and return to fresh water as juveniles) remain understudied owing to the difficulties of tracking tiny larval fish. Despite this, it has widely been assumed that amphidromous fish have open, resilient populations, with marine-rearing larvae dispersing widely during their pelagic phase. In the present study we tested the hypothesis that when an alternative freshwater pelagic habitat is available, non-diadromous recruitment will be the dominant process in sustaining amphidromous fish populations, with implications for their connectivity and resilience. Otolith microchemical analyses of five species (three Galaxias (Galaxiidae), two Gobiomorphus (Eleotridae)) from paired systems on the South Island of New Zealand indicated that when a suitable freshwater pelagic habitat existed downstream, non-diadromous recruitment was the primary population-sustaining process, typically contributing >90% of recruits. In addition, not all species recruited from all lakes, indicating the importance of the largely unstudied role of species-specific amphidromous larval requirements. The results of the present study emphasise the need to better understand the dynamics of individual populations of amphidromous fish, and highlight the importance of understanding species-specific early life history requirements to fully understand their distributions and management needs.

Prey tell: what quillback rockfish early life history traits reveal about their survival in encounters with juvenile coho salmon

2020 ◽  
Vol 650 ◽  
pp. 7-18 ◽  
Author(s):  
HW Fennie ◽  
S Sponaugle ◽  
EA Daly ◽  
RD Brodeur
Keyword(s):  
Life History ◽  
Early Life ◽  
Life History Traits ◽  
Direct Evidence ◽  
Coho Salmon ◽  
Larval Fish ◽  
Early Life History ◽  
In The Wild ◽  
Otolith Microstructure Analysis ◽  
Pelagic Juvenile

Predation is a major source of mortality in the early life stages of fishes and a driving force in shaping fish populations. Theoretical, modeling, and laboratory studies have generated hypotheses that larval fish size, age, growth rate, and development rate affect their susceptibility to predation. Empirical data on predator selection in the wild are challenging to obtain, and most selective mortality studies must repeatedly sample populations of survivors to indirectly examine survivorship. While valuable on a population scale, these approaches can obscure selection by particular predators. In May 2018, along the coast of Washington, USA, we simultaneously collected juvenile quillback rockfish Sebastes maliger from both the environment and the stomachs of juvenile coho salmon Oncorhynchus kisutch. We used otolith microstructure analysis to examine whether juvenile coho salmon were age-, size-, and/or growth-selective predators of juvenile quillback rockfish. Our results indicate that juvenile rockfish consumed by salmon were significantly smaller, slower growing at capture, and younger than surviving (unconsumed) juvenile rockfish, providing direct evidence that juvenile coho salmon are selective predators on juvenile quillback rockfish. These differences in early life history traits between consumed and surviving rockfish are related to timing of parturition and the environmental conditions larval rockfish experienced, suggesting that maternal effects may substantially influence survival at this stage. Our results demonstrate that variability in timing of parturition and sea surface temperature leads to tradeoffs in early life history traits between growth in the larval stage and survival when encountering predators in the pelagic juvenile stage.

Hormones and Behavior

2019 ◽  
pp. 11-26
Author(s):  
Maren N. Vitousek ◽  
Laura A. Schoenle
Keyword(s):  
Life History ◽  
Life Histories ◽  
Life History Traits ◽  
Developmental Plasticity ◽  
Endocrine System ◽  
Phenotypic Traits ◽  
Social Environments ◽  
Trade Offs ◽  
And Behavior

Hormones mediate the expression of life history traits—phenotypic traits that contribute to lifetime fitness (i.e., reproductive timing, growth rate, number and size of offspring). The endocrine system shapes phenotype by organizing tissues during developmental periods and by activating changes in behavior, physiology, and morphology in response to varying physical and social environments. Because hormones can simultaneously regulate many traits (hormonal pleiotropy), they are important mediators of life history trade-offs among growth, reproduction, and survival. This chapter reviews the role of hormones in shaping life histories with an emphasis on developmental plasticity and reversible flexibility in endocrine and life history traits. It also discusses the advantages of studying hormone–behavior interactions from an evolutionary perspective. Recent research in evolutionary endocrinology has provided insight into the heritability of endocrine traits, how selection on hormone systems may influence the evolution of life histories, and the role of hormonal pleiotropy in driving or constraining evolution.

scholarly journals Dietary Modulation of Bacteriophages as an Additional Player in Inflammation and Cancer

Cancers ◽  
2021 ◽  
Vol 13 (9) ◽  
pp. 2036
Author(s):  
Luigi Marongiu ◽  
Markus Burkard ◽  
Sascha Venturelli ◽  
Heike Allgayer
Keyword(s):  
Structural Damage ◽  
Folk Medicine ◽  
Gastrointestinal Diseases ◽  
Potential Contribution ◽  
Anticancer Properties ◽  
Specific Phage ◽  
Microbial Network ◽  
Inflammatory Bowel ◽  
Species Specific

Natural compounds such as essential oils and tea have been used successfully in naturopathy and folk medicine for hundreds of years. Current research is unveiling the molecular role of their antibacterial, anti-inflammatory, and anticancer properties. Nevertheless, the effect of these compounds on bacteriophages is still poorly understood. The application of bacteriophages against bacteria has gained a particular interest in recent years due to, e.g., the constant rise of antimicrobial resistance to antibiotics, or an increasing awareness of different types of microbiota and their potential contribution to gastrointestinal diseases, including inflammatory and malignant conditions. Thus, a better knowledge of how dietary products can affect bacteriophages and, in turn, the whole gut microbiome can help maintain healthy homeostasis, reducing the risk of developing diseases such as diverse types of gastroenteritis, inflammatory bowel disease, or even cancer. The present review summarizes the effect of dietary compounds on the physiology of bacteriophages. In a majority of works, the substance class of polyphenols showed a particular activity against bacteriophages, and the primary mechanism of action involved structural damage of the capsid, inhibiting bacteriophage activity and infectivity. Some further dietary compounds such as caffeine, salt or oregano have been shown to induce or suppress prophages, whereas others, such as the natural sweeter stevia, promoted species-specific phage responses. A better understanding of how dietary compounds could selectively, and specifically, modulate the activity of individual phages opens the possibility to reorganize the microbial network as an additional strategy to support in the combat, or in prevention, of gastrointestinal diseases, including inflammation and cancer.

scholarly journals Species-Specific Regulation of TRPM2 by PI(4,5)P2 via the Membrane Interfacial Cavity

2021 ◽  
Vol 22 (9) ◽  
pp. 4637
Author(s):  
Daniel Barth ◽  
Andreas Lückhoff ◽  
Frank J. P. Kühn
Keyword(s):  
Amino Acid Residues ◽  
Hek 293 ◽  
Complete Inactivation ◽  
293 Cells ◽  
Activation Mechanisms ◽  
Specific Regulation ◽  
Species Specific ◽  
Inside Out ◽  
Positively Charged

The human apoptosis channel TRPM2 is stimulated by intracellular ADR-ribose and calcium. Recent studies show pronounced species-specific activation mechanisms. Our aim was to analyse the functional effect of phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2), commonly referred to as PIP2, on different TRPM2 orthologues. Moreover, we wished to identify the interaction site between TRPM2 and PIP2. We demonstrate a crucial role of PIP2, in the activation of TRPM2 orthologues of man, zebrafish, and sea anemone. Utilizing inside-out patch clamp recordings of HEK-293 cells transfected with TRPM2, differential effects of PIP2 that were dependent on the species variant became apparent. While depletion of PIP2 via polylysine uniformly caused complete inactivation of TRPM2, restoration of channel activity by artificial PIP2 differed widely. Human TRPM2 was the least sensitive species variant, making it the most susceptible one for regulation by changes in intramembranous PIP2 content. Furthermore, mutations of highly conserved positively charged amino acid residues in the membrane interfacial cavity reduced the PIP2 sensitivity in all three TRPM2 orthologues to varying degrees. We conclude that the membrane interfacial cavity acts as a uniform PIP2 binding site of TRPM2, facilitating channel activation in the presence of ADPR and Ca2+ in a species-specific manner.

scholarly journals Sialic Acids as Receptors for Pathogens

Biomolecules ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 831
Author(s):  
Patrycja Burzyńska ◽  
Łukasz F. Sobala ◽  
Krzysztof Mikołajczyk ◽  
Marlena Jodłowska ◽  
Ewa Jaśkiewicz
Keyword(s):  
Malaria Parasite ◽  
Sialic Acids ◽  
Influenza Viruses ◽  
Disease Vectors ◽  
Animal Disease ◽  
Parasite Plasmodium ◽  
Parasite Plasmodium Falciparum ◽  
Infection Biology ◽  
Species Specific

Carbohydrates have long been known to mediate intracellular interactions, whether within one organism or between different organisms. Sialic acids (Sias) are carbohydrates that usually occupy the terminal positions in longer carbohydrate chains, which makes them common recognition targets mediating these interactions. In this review, we summarize the knowledge about animal disease-causing agents such as viruses, bacteria and protozoa (including the malaria parasite Plasmodium falciparum) in which Sias play a role in infection biology. While Sias may promote binding of, e.g., influenza viruses and SV40, they act as decoys for betacoronaviruses. The presence of two common forms of Sias, Neu5Ac and Neu5Gc, is species-specific, and in humans, the enzyme converting Neu5Ac to Neu5Gc (CMAH, CMP-Neu5Ac hydroxylase) is lost, most likely due to adaptation to pathogen regimes; we discuss the research about the influence of malaria on this trait. In addition, we present data suggesting the CMAH gene was probably present in the ancestor of animals, shedding light on its glycobiology. We predict that a better understanding of the role of Sias in disease vectors would lead to more effective clinical interventions.

scholarly journals An Exon-Based Comparative Variant Analysis Pipeline to Study the Scale and Role of Frameshift and Nonsense Mutation in the Human-Chimpanzee Divergence

2009 ◽  
Vol 2009 ◽  
pp. 1-19 ◽  
Author(s):  
GongXin Yu
Keyword(s):  
Molecular Mechanisms ◽  
Inflammatory Diseases ◽  
Cell Lineage ◽  
Nonsense Mutations ◽  
Less Is More ◽  
Sequencing Errors ◽  
Evolutionary Force ◽  
Variant Analysis ◽  
Species Specific

Chimpanzees and humans are closely related but differ in many deadly human diseases and other characteristics in physiology, anatomy, and pathology. In spite of decades of extensive research, crucial questions about the molecular mechanisms behind the differences are yet to be understood. Here I reportExonVar, a novel computational pipeline forExon-based human-chimpanzee comparativeVariant analysis. The objective is to comparatively analyze mutations specifically those that caused the frameshift and nonsense mutations and to assess their scale and potential impacts on human-chimpanzee divergence. Genomewide analysis of human and chimpanzee exons withExonVaridentified a number of species-specific, exon-disrupting mutations in chimpanzees but much fewer in humans. Many were found on genes involved in important biological processes such as T cell lineage development, the pathogenesis of inflammatory diseases, and antigen induced cell death. A “less-is-more” model was previously established to illustrate the role of the gene inactivation and disruptions during human evolution. Here this analysis suggested a different model where the chimpanzee-specific exon-disrupting mutations may act as additional evolutionary force that drove the human-chimpanzee divergence. Finally, the analysis revealed a number of sequencing errors in the chimpanzee and human genome sequences and further illustrated that they could be corrected without resequencing.

Characterizing spatial structures of larval fish assemblages at multiple scales in relation to environmental heterogeneity in the Strait of Georgia (British Columbia, Canada)

2018 ◽  
Vol 75 (11) ◽  
pp. 1902-1914 ◽  
Author(s):  
Lu Guan ◽  
John F. Dower ◽  
Pierre Pepin
Keyword(s):  
British Columbia ◽  
Environmental Heterogeneity ◽  
Multiple Scales ◽  
Larval Fish ◽  
Critical Role ◽  
Multiscale Approach ◽  
Spatial Structures ◽  
Strait Of Georgia ◽  
Medium Scale

Spatial structures of larval fish in the Strait of Georgia (British Columbia, Canada) were quantified in the springs of 2009 and 2010 to investigate linkages to environmental heterogeneity at multiple scales. By applying a multiscale approach, principal coordinate neighborhood matrices, spatial variability was decomposed into three predefined scale categories: broad scale (>40 km), medium scale (20∼40 km), and fine scale (<20 km). Spatial variations in larval density of the three dominant fish taxa with different early life histories (Pacific herring (Clupea pallasii), Pacific hake (Merluccius productus), and northern smoothtongue (Leuroglossus schmidti)) were mainly structured at broad and medium scales, with scale-dependent associations with environmental descriptors varying interannually and among species. Larval distributions in the central-southern Strait were mainly associated with salinity, temperature, and vertical stability of the top 50 m of the water column on the medium scale. Our results emphasize the critical role of local estuarine circulation, especially at medium spatial scale, in structuring hierarchical spatial distributions of fish larvae in the Strait of Georgia and suggest the role of fundamental differences in life-history traits in influencing the formation and maintenance of larval spatial structures.

Traditional knowledge and satellite tracking as complementary approaches to ecological understanding

2004 ◽  
Vol 31 (3) ◽  
pp. 177-180 ◽  
Author(s):  
HENRY P. HUNTINGTON ◽  
ROBERT S. SUYDAM ◽  
DANIEL H. ROSENBERG
Keyword(s):  
Environmental Management ◽  
Traditional Knowledge ◽  
Scientific Knowledge ◽  
Spatial Scales ◽  
Satellite Tracking ◽  
Migratory Species ◽  
Ecological Understanding ◽  
Considerable Research ◽  
The Subject ◽  
Management And Conservation

The integration or co-application of traditional knowledge and scientific knowledge has been the subject of considerable research and discussion (see Johannes 1981; Johnson 1992; Stevenson 1996; McDonald et al. 1997; Huntington et al. 1999, 2002), with emphasis on various specific topics including environmental management and conservation (see Freeman & Carbyn 1988; Ferguson & Messier 1997; Ford & Martinez 2000; Usher 2000; Albert 2001). In most cases, examples of successful integration compare traditional and scientific observations at similar spatial scales to increase confidence in understanding or to fill gaps that appear from either perspective. We present a different approach to integration, emphasizing complementarity rather than concordance in spatial perspective, using two migratory species as examples.

scholarly journals Role of sexual imprinting in assortative mating and premating isolation in Darwin’s finches

2018 ◽  
Vol 115 (46) ◽  
pp. E10879-E10887 ◽  
Author(s):  
Peter R. Grant ◽  
B. Rosemary Grant
Keyword(s):  
Natural Habitat ◽  
Good Choice ◽  
Premating Isolation ◽  
Sexual Imprinting ◽  
Darwin's Finches ◽  
Darwin’S Finches ◽  
Adaptive Radiations ◽  
Beak Size ◽  
Species Specific

Global biodiversity is being degraded at an unprecedented rate, so it is important to preserve the potential for future speciation. Providing for the future requires understanding speciation as a contemporary ecological process. Phylogenetically young adaptive radiations are a good choice for detailed study because diversification is ongoing. A key question is how incipient species become reproductively isolated from each other. Barriers to gene exchange have been investigated experimentally in the laboratory and in the field, but little information exists from the quantitative study of mating patterns in nature. Although the degree to which genetic variation underlying mate-preference learning is unknown, we provide evidence that two species of Darwin’s finches imprint on morphological cues of their parents and mate assortatively. Statistical evidence of presumed imprinting is stronger for sons than for daughters and is stronger for imprinting on fathers than on mothers. In combination, morphology and species-specific song learned from the father constitute a barrier to interbreeding. The barrier becomes stronger the more the species diverge morphologically and ecologically. It occasionally breaks down, and the species hybridize. Hybridization is most likely to happen when species are similar to each other in adaptive morphological traits, e.g., body size and beak size and shape. Hybridization can lead to the formation of a new species reproductively isolated from the parental species as a result of sexual imprinting. Conservation of sufficiently diverse natural habitat is needed to sustain a large sample of extant biota and preserve the potential for future speciation.

scholarly journals The Role of Gardens in Integrated Conservation Practice

2019 ◽  
pp. 177-188
Author(s):  
Audrey Denvir ◽  
Jeannine Cavender-Bares ◽  
Antonio González-Rodríguez
Keyword(s):  
Plant Conservation ◽  
Ex Situ ◽  
Conservation Practice ◽  
Integrated Research ◽  
Academic Researchers ◽  
Conservation Plan ◽  
Species Specific ◽  
Integrated Conservation

Gardens and horticulturists play an increasingly important role in plant conservation, both in situ and ex situ. Integrated research and conservation of species intends to work across fields to connect science to conservation practice by engaging actors from different sectors, including gardens. The case of integrated conservation of Quercus brandegeei, a microendemic oak species in Baja California Sur, Mexico, is presented as an example of a collaboration between gardens and academic researchers to create a species-specific conservation plan that incorporates horticultural knowledge.

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