Systematic revision and phylogenetic reassessment of the centipede genera Rhysida Wood, 1862 and Alluropus Silvestri, 1912 (Chilopoda: Scolopendromorpha) in Southeast Asia, with further discussion of the subfamily Otostigminae

2018 ◽  
Vol 32 (5) ◽  
pp. 1005 ◽  
Author(s):  
Warut Siriwut ◽  
Gregory D. Edgecombe ◽  
Chirasak Sutcharit ◽  
Piyoros Tongkerd ◽  
Somsak Panha
Keyword(s):  
Phylogenetic Relationships ◽  
Molecular Phylogenetics ◽  
Molecular Similarity ◽  
Taxonomic Revision ◽  
Systematic Revision ◽  
Allopatric Populations ◽  
Se Asia ◽  
Putative Species ◽  
Species Being ◽  
Significant Support

Phylogenetic relationships of two morphologically similar scolopendrid genera, Rhysida Wood, 1862, and Alluropus Silvestri, 1912, were investigated based on broad-scale taxonomic sampling from SE Asia, India and Australia. Morphological revision and molecular phylogenetics using three loci validate seven Rhysida species in SE Asia and Australia: R. lithobioides (Newport, 1845), R. longipes (Newport, 1845), R. immarginata (Porat, 1876), R. nuda (Newport, 1845), R. carinulata (Haase, 1887), R. singaporiensis Verhoeff, 1937 and R. polyacantha Koch, 1985. The nominal SE Asian species R. leviventer Attems, 1953 and R. marginata Attems, 1953 are placed in junior subjective synonymy with R. lithobioides and Alluropus calcaratus (Pocock, 1891), respectively. The monotypic genus Alluropus is redescribed, molecular phylogeny recovering it nesting together with Indo-Australian Rhysida. Taxonomic revision reassigned R. calcarata Pocock, 1891 to Alluropus based on its morphological and molecular similarity to the type, A. demangei Silvestri, 1912, the differences between putative species being sexual variation. Two morphologically distinct allopatric populations of A. calcaratus, comb. nov. (= A. demangei, syn. nov.) were found in the Indochina subregion. Phylogenetic relationships in Otostigminae remain unsettled because clades within several genera lack significant support, although Rhysida consistently falls into two clades that are not each other’s closest relative.

Taxonomic revision of Israeli snakes belonging to the Platyceps rhodorachis species complex (Reptilia: Squamata: Colubridae)

Zootaxa ◽  
2018 ◽  
Vol 4379 (3) ◽  
pp. 301 ◽  
Author(s):  
GUY SINAIKO ◽  
TALI MAGORY-COHEN ◽  
SHAI MEIRI ◽  
ROI DOR
Keyword(s):  
Species Complex ◽  
Sequence Divergence ◽  
Taxonomic Revision ◽  
Single Species ◽  
Molecular Data ◽  
Clinal Variation ◽  
Putative Species ◽  
Previous Decade ◽  
Morphological And Molecular Data ◽  
Species Being

The Platyceps rhodorachis species complex encompasses a widespread group of morphologically similar colubrid snakes. The number and identities of species from this complex in Israel have recently been debated. Studies from the previous decade concluded that there are two species in Israel and its vicinity (compared with one previously recognized), but their identity remained contested. We estimated the number of species and their taxonomic identity using morphological and molecular data. We found some evidence for clinal variation in many of the characters used to differentiate the species, and a great overlap in traits of putative species. Genetic data revealed very low sequence divergence, with all putative species being paraphyletic. Platyceps rogersi emerged as genetically closer to Platyceps saharicus rather than to its putative conspecific, P. karelini. The phylogenetic and taxonomic results thus indicate that the Israeli populations of the P. rhodorachis complex all belong to a single species, Platyceps saharicus (Schätti & McCarthy 2004). 

Taxonomic revision of the moss salamander Nototriton barbouri (Schmidt (Caudata: Plethodontidae), with description of two new species from the Cordillera Nombre de Dios, Honduras

Zootaxa ◽  
2016 ◽  
Vol 4196 (4) ◽  
pp. 511
Author(s):  
JOSIAH H. TOWNSEND
Keyword(s):  
New Species ◽  
Central America ◽  
Cytochrome B ◽  
Morphological Variation ◽  
Phylogenetic Relationships ◽  
Mitochondrial Gene ◽  
Taxonomic Revision ◽  
Putative Species ◽  
Two New Species

Moss salamanders (genus Nototriton) are represented in northern Central America by nine putative species: N. barbouri, N. brodiei, N. lignicola, N. limnospectator, N. mime, N. picucha, N. saslaya, N. stuarti, and N. tomamorum. I estimate the phylogenetic relationships for these species based on data from three mitochondrial gene fragments (16S, cytochrome b, and COI), and compare morphological variation among putative taxa. As evidenced here and in previous studies, the taxon N. barbouri is paraphyletic with respect to populations from the Cordillera Nombre de Dios in northern Honduras. I restrict this taxon to populations from the Sierra de Sulaco in central Yoro, Honduras, and describe two new species from the Cordillera Nombre de Dios. 

Systematic revision, diversity patterns and trophic ecology of the tropical Indo-West Pacific sea slug genus Phanerophthalmus A. Adams, 1850 (Cephalaspidea, Haminoeidae)

2018 ◽  
Vol 32 (6) ◽  
pp. 1336 ◽  
Author(s):  
Jennifer Austin ◽  
Terrence Gosliner ◽  
Manuel A. E. Malaquias
Keyword(s):  
Content Analysis ◽  
Molecular Phylogenetics ◽  
Trophic Ecology ◽  
Rrna Genes ◽  
28S Rrna ◽  
Gut Content Analysis ◽  
Gut Content ◽  
Central Pacific ◽  
Systematic Revision ◽  
West Pacific

Phanerophthalmus is a genus of Indo-West Pacific sea slugs inhabiting seagrass and coral reefs with up to now seven species currently recognised as valid. The goals of this study are to revise the systematics of Phanerophthalmus, infer its phylogeny and patterns of diversity, as well as study its diet. Morphology was combined with molecular phylogenetics based on two mitochondrial (cytochrome c oxidase subunit I, 16S rRNA) and one nuclear (28S rRNA) genes. Molecular species delimitation methods (ABGD, DISSECT) were employed to aid delimiting species. Diet was assessed by gut content analysis. Seventeen species were recognised, 10 of them new to science (P. albotriangulatum, sp. nov., P. anettae, sp. nov., P. batangas, sp. nov., P. boucheti, sp. nov., P. cerverai, sp. nov., P. lentigines, sp. nov., P. paulayi, sp. nov., P. purpura, sp. nov., P. rudmani, sp. nov., P. tibiricae, sp. nov.). Phanerophthalmus has its highest diversity in the Western Pacific where 13 species occur with a peak in the Coral Triangle (11 species; three only known from here). Diversity decreases towards the Central Pacific with five species and Indian Ocean/Red Sea with four species. Only two species are distributed across the Indo-West Pacific. Preliminary gut content analysis suggests these slugs feed on diatoms.

scholarly journals Quid estClea helena?Evidence for a previously unrecognized radiation of assassin snails (Gastropoda: Buccinoidea: Nassariidae)

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3638 ◽  
Author(s):  
Ellen E. Strong ◽  
Lee Ann Galindo ◽  
Yuri I. Kantor
Keyword(s):  
Life History ◽  
Type Species ◽  
Species Complex ◽  
Aquarium Trade ◽  
Systematic Revision ◽  
Mitochondrial Coi ◽  
Phylogenetic Placement ◽  
Se Asia ◽  
The Family ◽  
The Us

The genusCleafrom SE Asia is from one of only two unrelated families among the megadiverse predatory marine Neogastropoda to have successfully conquered continental waters. While little is known about their anatomy, life history and ecology, interest has grown exponentially in recent years owing to their increasing popularity as aquarium pets. However, the systematic affinities of the genus and the validity of the included species have not been robustly explored. Differences in shell, operculum and radula characters support separation ofCleaas presently defined into two distinct genera:Clea, for the type speciesClea nigricansand its allies, andAnentomeforClea helenaand allies. A five-gene mitochondrial (COI, 16S, 12S) and nuclear (H3, 28S) gene dataset confirms the placement ofAnentomeas a somewhat isolated offshoot of the family Nassariidae and sister to the estuarineNassodonta. Anatomical data corroborate this grouping and, in conjunction with their phylogenetic placement, support their recognition as a new subfamily, the Anentominae. The assassin snailAnentome helena, a popular import through the aquarium trade so named for their voracious appetite for other snails, is found to comprise a complex of at least four species. None of these likely represents trueAnentome helenadescribed from Java, including a specimen purchased through the aquarium trade under this name in the US and one that was recently found introduced in Singapore, both of which were supported as conspecific with a species from Thailand. The introduction ofAnentome“helena” through the aquarium trade constitutes a significant threat to native aquatic snail faunas which are often already highly imperiled. Comprehensive systematic revision of this previously unrecognized species complex is urgently needed to facilitate communication and manage this emerging threat.

scholarly journals Taxonomic revision and phylogenetic relationships of Dasyloricaria Isbrücker & Nijssen, 1979 (Siluriformes: Loricariidae), with description of a new species

2016 ◽  
Vol 14 (1) ◽  
Author(s):  
Alejandro Londoño-Burbano ◽  
Roberto E. Reis
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Phylogenetic Relationships ◽  
Taxonomic Revision ◽  
Sister Group ◽  
Valid Species ◽  
Maracaibo Basin ◽  
New Synonyms ◽  
Branchial Arches ◽  
A New Species

ABSTRACT A taxonomic revision and phylogenetic analysis were completed for Dasyloricaria . The genus includes three valid species: D . filamentosa and D . latiura previously included in the genus, and a new species described herein. Dasyloricaria have a restricted trans-Andean distribution, with D . filamentosa occurring at the lower and middle Magdalena, lower Cauca, and Sinu in Colombia, and lago Maracaibo basin in Colombia and Venezuela; D . latiura in the Atrato and the Tuyra basins in Colombia and Panama, respectively; and the new species in the upper and middle Magdalena basin in Colombia. New synonyms for D . filamentosa and D . latiura are proposed, and a lectotype is designated for the latter. Dasyloricaria is herein recognized as monophyletic, with D . filamentosa as the sister group of D . latiura , and the new speciesas sister to that clade. Spatuloricaria is hypothesized to be the sister group of Dasyloricaria based on synapomorphies of the neurocranium, branchial arches and external morphology features. The subtribe Rineloricariina was partially corroborated through the phylogenetic analysis. An identification key for the species of Dasyloricaria is provided.

scholarly journals Molecular phylogenetics and systematic revision of the south-eastern Australian Helicarionidae (Gastropoda, Stylommatophora)

2017 ◽  
Vol 86 (1) ◽  
pp. 51-95 ◽  
Author(s):  
Isabel T. Hyman ◽  
Irantzu de la Iglesia Lamborena ◽  
Frank Köhler
Keyword(s):  
New Species ◽  
Molecular Phylogenetics ◽  
New South ◽  
Shell Morphology ◽  
The South ◽  
Systematic Revision ◽  
South Eastern ◽  
Southeastern Australia ◽  
South Wales ◽  
One New Species

The south-eastern Australian helicarionid clade currently comprises six genera of snails and semislugs united by genital characters, including an epiphallic flagellum that produces a spiraling, spinose spermatophore, the absence of an epiphallic caecum, and the presence of at most a very short vagina. We comprehensively revise the taxonomy of this group based on comparative analyses of key morphological features and mitochondrial markers COI and 16S, revise the placement of several species described recently on the basis of shell morphology alone, and describe new taxa. The snail genus Brevisentis is monophyletic as currently understood, but includes an additional undescribed species from Wollemi National Park, New South Wales. Mysticarion is shown to contain four arboreal semislugs with wide, disjunct ranges, including one new species (Mysticarion obscurior sp. nov.). We synonymise Fastosarion staffordorum with Mysticarion hyalinus. The semislug Desidarion is synonymised with Parmavitrina, and we describe two new species of this genus, P. flavocarinata sp. nov. and P. maculosa sp. nov. The semi-arboreal semislug Cucullarion is herein included in the south-eastern Australian helicarionid clade based on morphological and genetic evidence, despite its more northerly distribution. Two small semislugs so far placed in Peloparion do not group together and a new genus, Ubiquitarion gen. nov., is described for Peloparion iridis. All of these genera, together with the semislug Helicarion (not included here), form a monophyletic radiation endemic to southeastern Australia.

Taxonomic revision and preliminary phylogenetic analysis of the subgenus Megalostomis (Scaphigenia) Lacordaire (Coleoptera: Chrysomelidae)

2007 ◽  
Vol 38 (3) ◽  
pp. 335-359 ◽  
Author(s):  
Sergio Roig-Juñent ◽  
Martha Domínguez ◽  
Federico Agrain
Keyword(s):  
Phylogenetic Analysis ◽  
Arid Regions ◽  
Cladistic Analysis ◽  
Taxonomic Revision ◽  
Morphological Characters ◽  
Distribution Data ◽  
Species Status ◽  
Systematic Revision ◽  
Male And Female ◽  
Preliminary Phylogenetic Analysis

AbstractThe subgenus M. (Scaphigenia) Lacordaire includes six species distributed in arid regions of South America. A systematic revision of this subgenus is presented, including re-descriptions and an update of distribution data of the six species. A preliminary cladistic analysis is performed to test the relationships among the species of the subgenus and if the morphological characters used are suitable. A key is presented to separate the seven subgenera of Megalostomis Chevrolat as well as a key for the species of the subgenus M. (Scaphigenia). Male aedeagus internal sac of the nine studied taxa are described and illustrated. This constitutes the first internal sac descriptions for members of this subtribe and could help clarify the homology of such structures within Cryptocephalinae. M. (S) consimilis Achard is reassigned to the species status on the base of genitalic characters. The cladistic analysis was done using forty-one characters from adult external morphology and male and female genitalia. Two species of two different subgenera of Megalostomis: M. (Megalostomis), and M. (Heterostomis) Lacordaire, and one representative of the genus Themesia Lacordaire were selected as out groups. Results were obtained by implicit enumeration using parsimony software. Three equally parsimonious trees were obtained of 45 steps, Ri=0.952, and Ci= 0.941. Support of each group was evaluated by Jacknifing, Bootstrap and Bremer values. Relationships between species are discussed.

Phylogenetics and revised taxonomy of the Australian freshwater cod genus, Maccullochella (Percichthyidae)

2010 ◽  
Vol 61 (9) ◽  
pp. 980 ◽  
Author(s):  
Catherine J. Nock ◽  
Martin S. Elphinstone ◽  
Stuart J. Rowland ◽  
Peter R. Baverstock
Keyword(s):  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Strong Support ◽  
Taxonomic Revision ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Allopatric Populations ◽  
Murray Darling Basin ◽  
Murray Cod ◽  
Australian Freshwater

Determining the phylogenetic and taxonomic relationships among allopatric populations can be difficult, especially when divergence is recent and morphology is conserved. We used mitochondrial sequence data from the control region and three protein-coding genes (1253 bp in total) and genotypes determined at 13 microsatellite loci to examine the evolutionary relationships among Australia’s largest freshwater fish, the Murray cod, Maccullochella peelii peelii, from the inland Murray–Darling Basin, and its allopatric sister taxa from coastal drainages, the eastern freshwater cod, M. ikei, and Mary River cod, M. peelii mariensis. Phylogenetic analyses provided strong support for taxon-specific clades, with a clade containing both of the eastern taxa reciprocally monophyletic to M. peelii peelii, suggesting a more recent common ancestry between M. ikei and M. peelii mariensis than between the M. peelii subspecies. This finding conflicts with the existing taxonomy and suggests that ancestral Maccullochella crossed the Great Dividing Range in the Pleistocene and subsequently diverged in eastern coastal drainages. Evidence from the present study, in combination with previous morphological and allozymatic data, demonstrates that all extant taxa are genetically and morphologically distinct. The taxonomy of Maccullochella is revised, with Mary River cod now recognised as a species, Maccullochella mariensis, a sister species to eastern freshwater cod, M. ikei. As a result of the taxonomic revision, Murray cod is M. peelii.

A systematic revision of Japanese Trichadenotecnum Enderlein (Psocodea:'Psocoptera':Psocidae:Ptyctini), with redefinition and subdivision of the genus

2001 ◽  
Vol 15 (2) ◽  
pp. 159 ◽  
Author(s):  
Kazunori Yoshizawa
Keyword(s):  
Phylogenetic Relationships ◽  
Monophyletic Group ◽  
Japanese Species ◽  
Systematic Revision ◽  
Incertae Sedis ◽  
Species Groups ◽  
Medium Group

The genus Trichadenotecnum Enderlein, 1909 is redefined as a monophyletic group. The following 22 Japanese species are treated and classified into five species-groups except one species not placed in a group: sexpunctatum-group – T. album, sp. nov., T. incognitum Roesler, 1939; medium-group – T. takahashii, sp. nov., T. mixtum, sp. nov., T. magnomixtum, sp. nov., T. amamiense, sp. nov., T. okinawense, sp. nov., T. yonaguniense, sp. nov., T. kumejimense, sp. nov., T. latebrachium, sp. nov., T. pseudomedium, sp. nov., T. yaeyamense, sp. nov.; alexanderae-group – T. alexanderae Sommerman, 1948, T. castum Betz, 1983, T. sexpunctellum (Enderlein, 1907); majus-group – T. yamatomajus, sp. nov., T. nothoapertum, sp. nov.; spiniserrulum-group – T. falx, sp. nov., T. furcalingum, sp. nov., T. pardidum Thornton, 1961, T. circularoides Badonnel, 1955; incertae sedis – T. fuscipennis, sp. nov. The monophyly and phylogenetic relationships of these species-groups are discussed. A key to Japanese species of Trichadenotecnum is given.

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