Systematic revision of Brachypelma red-kneed tarantulas (Araneae : Theraphosidae), and the use of DNA barcodes to assist in the identification and conservation of CITES-listed species

2017 ◽  
Vol 31 (2) ◽  
pp. 157 ◽  
Author(s):  
Jorge Mendoza ◽  
Oscar Francke

Mexican red-kneed tarantulas of the genus Brachypelma are regarded as some of the most desirable invertebrate pets, and although bred in captivity, they continue to be smuggled out of the wild in large numbers. Species are often difficult to identify based solely on morphology, therefore prompt and accurate identification is required for adequate protection. Thus, we explored the applicability of using COI-based DNA barcoding as a complementary identification tool. Brachypelma smithi (F. O. Pickard-Cambridge, 1897) and Brachypelma hamorii Tesmongt, Cleton & Verdez, 1997 are redescribed, and their morphological differences defined. Brachypelma annitha is proposed as a new synonym of B. smithi. The current distribution of red-kneed tarantulas shows that the Balsas River basin may act as a geographical barrier. Morphological and molecular evidence are concordant and together provide robust hypotheses for delimiting Mexican red-kneed tarantula species. DNA barcoding of these tarantulas is further shown to be useful for species-level identification and for potentially preventing black market trade in these spiders. As a Convention on International Trade in Endangered Species (CITES) listing does not protect habitat, or control wildlife management or human interactions with organisms, it is important to support environmental conservation activities to provide an alternative income for local communities and to avoid damage to wildlife populations.

2019 ◽  
Vol 57 (3) ◽  
pp. 915-926
Author(s):  
Aida Syafinaz Mokhtar ◽  
Yee Ling Lau ◽  
John-James Wilson ◽  
Noraishah Mydin Abdul-Aziz

Abstract Pediculosis capitis caused by Pediculus humanus capitis (De Geer) is endemic all over the world, and children are mostly affected, particularly those living in overcrowded institutions. Several studies have shown that P. h. capitis carried human pathogenic bacteria, suggesting the potential role of head lice in the transmission of pathogens to humans. In this study, we determined the genetic diversity of head lice collected from welfare homes sheltering underprivileged children by using DNA barcoding and demonstrated the presence of Acinetobacter spp., Serratia marcescens, and Staphylococcus aureus in head lice, which have never been investigated before in Malaysia. Cox1 DNA barcoding identified the head lice, P. h. capitis collected from welfare homes across two geographical areas of Peninsular Malaysia as belonging to clades A, B, and D. Acinetobacter bacteria: Acinetobacter guillouiae, Acinetobacter junii, Acinetobacter baumannii, and Acinetobacter nosocomialis were detected in head lice belonging to clades A and also D. In addition, DNA from S. marcescens and S. aureus were also detected in both clades A and D. To our knowledge, this is the first report on the genetic diversity of head lice in Malaysia through DNA barcoding, as well as the first to provide molecular evidence on the type of bacteria occurring in head lice in Malaysia. It is anticipated that the DNA barcoding technique used in this study will be able to provide rapid and accurate identification of arthropods, in particular, medically important ectoparasites.


Botany ◽  
2008 ◽  
Vol 86 (7) ◽  
pp. 773-789 ◽  
Author(s):  
Gary W. Saunders

The field of DNA barcoding is working towards generating a genetic system for the quick and accurate identification of eukaryotic species. For the more systematic minded, however, DNA barcoding offers a new approach towards screening and uniting large numbers of biological specimens in genetic groups as a first step towards assigning them to species and genera in an approach best termed “molecular-assisted alpha taxonomy”. This approach is particularly amenable in organisms with simple morphologies, a propensity for convergence, extensive phenotypic plasticity, and life histories with an alternation of heteromorphic generations. It is hard to imagine a group of organisms better defined by all of these traits than the marine macroalgae. In an effort to assess the utility of the DNA barcode (COI-5′) for testing the current concepts of biodiversity of marine macroalgae in Canada, a study to assess species diversity in the red algal family, Dumontiaceae, was initiated. Through this work I confirm the presence in Canadian waters of Dilsea californica (J. Agardh) Kuntze, Dilsea integra (Kjellman) Rosenvinge, and Neodilsea borealis (I.A. Abbott) Lindstrom of the Dilsea–Neodilsea complex, and Weeksia coccinea (Harvey) Lindstrom for the genus Weeksia . However, our work has uncovered two additional species of the former complex, Dilsea lindstromiae Saunders sp. nov. and Dilsea pygmaea (Setchell) Setchell, and an additional species of the latter, Weeksia reticulata Setchell, effectively doubling representation of these foliose dumontiacean genera in Canadian waters.


2017 ◽  
Author(s):  
Brian J. Haas ◽  
Alex Dobin ◽  
Nicolas Stransky ◽  
Bo Li ◽  
Xiao Yang ◽  
...  

AbstractMotivationFusion genes created by genomic rearrangements can be potent drivers of tumorigenesis. However, accurate identification of functionally fusion genes from genomic sequencing requires whole genome sequencing, since exonic sequencing alone is often insufficient. Transcriptome sequencing provides a direct, highly effective alternative for capturing molecular evidence of expressed fusions in the precision medicine pipeline, but current methods tend to be inefficient or insufficiently accurate, lacking in sensitivity or predicting large numbers of false positives. Here, we describe STAR-Fusion, a method that is both fast and accurate in identifying fusion transcripts from RNA-Seq data.ResultsWe benchmarked STAR-Fusion’s fusion detection accuracy using both simulated and genuine Illumina paired-end RNA-Seq data, and show that it has superior performance compared to popular alternative fusion detection methods.Availability and implementationSTAR-Fusion is implemented in Perl, freely available as open source software at http://star-fusion.github.io, and supported on [email protected]


2021 ◽  
pp. 1-25
Author(s):  
Dávid Selnekovič ◽  
Katarína Goffová ◽  
Ján Kodada ◽  
Roberta Improta

Abstract The current interpretation of two common European species, Mordellistena minima Costa, 1854 and M. pseudorhenana Ermisch, 1977, is based on misidentification. The confusion regarding the identity of the species is fixed based on the revised type material. Here, the species are redescribed, and diagnostic characters are provided. Mordellistena pseudorhenana is revalidated. Mordellistena emeryi Schilsky, 1895 is recognised as a new synonym of M. minima. Mordellistena sajoi Ermisch, 1977 is recognised as a new synonym of M. pseudorhenana. Lectotype and paralectotypes of M. emeryi are designated. Mordellistena pseudorhenana is reported for the first time from Bosnia and Herzegovina, Slovenia, and Switzerland. Two morphotypes of M. pseudorhenana differing in size and shape of the parameres are recognised. Morphological differences are quantified and displayed using principal component analysis. In addition, DNA barcodes have been used for the first time in family Mordellidae to examine the divergences between the species and to interpret the morphological variability observed in M. pseudorhenana. Low genetic divergences did not provide the evidence for considering the morphotypes as separate species. The discrepancy between the morphological and molecular evidence raises questions about the efficiency of the CO1 gene for Mordellidae identification and the stability of morphological traits conventionally used for species separation.


Phytotaxa ◽  
2014 ◽  
Vol 172 (3) ◽  
pp. 271 ◽  
Author(s):  
Pamela Rodriguez Flakus ◽  
Christian Printzen

Based on anatomical investigations and a DNA barcoding approach the occurrence of a Biatora species from the B. rufidula group in Argentina and Chile is confirmed and the biogeographical implications briefly discussed. No morphological differences could be found that would distinguish the southern collections from typical B. rufidula. However, southern and northern samples appear paraphyletic within the B. rufidula clade. The South American material might therefore represent an undescribed species. Alternatively, the taxonomic status of the three northern species B. aegrefaciens, B. nobilis and B. rufidula might have to be reconsidered or the placement might be an artifact caused by the poor character sampling involved in the barcoding approach.


2019 ◽  
pp. 23-36
Author(s):  
Mario. R. Cabrera

Formerly Cnemidophorus was thought to be the most speciose genus of Teiidae. This genus comprised four morphological groups that were later defined as four different genera, Ameivula, Aurivela, Cnemidophorus and Contomastix. The last appears as paraphyletic in a recent phylogenetic reconstruction based on morphology, but monophyletic in a reconstruction using molecular characters. Six species are allocated to Contomastix. One of them, C. lacertoides, having an extensive and disjunct geographic distribution in Argentina, Uruguay and Brazil. Preliminary analyses revealed morphological differences among its populations, suggesting that it is actually a complex of species. Here, we describe a new species corresponding to the Argentinian populations hitherto regarded as C. lacertoides, by integrating morphological and molecular evidence. Furthermore, we demonstrate that the presence of notched proximal margin of the tongue is a character that defines the genus Contomastix.


2021 ◽  
pp. 544-556
Author(s):  
Michael MacKinnon

Animals of all types, be these domestic or wild, native or exotic, were routinely required for spectacles and events in the Graeco-Roman world, most notably, perhaps, in the context of the amphitheatre games of Roman antiquity. Behind such events, however, lay networks involved in the capture, transport, and supply of these animals. The integration of ancient textual, iconographical, and archaeological (including zooarchaeological) evidence provides the requisite data to investigate these aspects. Available ancient textual and artistic evidence suggest that soldiers and professional hunters, assisted by civilians and natives as required or demanded, undertook many of these tasks. Guilds or professional organizations of wild beast hunters and merchants provided further administrative, technical, financial, and transport assistance. Equipment involved in capturing the animals varied depending upon factors such as the size, age, or ferocity of the animal, but included a range of nets, cages, and traps, among other methods. Extrapolation from more modern practices, however, suggests that baiting and ambushing, arguably somewhat less noble or brave tactics, likely characterized much of exotic animal capture in antiquity. Treatment for many of these animals, in transit to their final destination, was probably poor; large numbers certainly perished during transport or while in captivity. Available zooarchaeological evidence helps locate exotic animal bones across different contexts in the ancient Graeco-Roman world, including beasts presumably involved in amphitheatre games, but also provides tempering evidence to downplay the magnitude of numbers actually supplied to such events, as is attested in ancient textual and iconographical data.


Author(s):  
Qian Tang ◽  
Qi Luo ◽  
Qian Duan ◽  
Lei Deng ◽  
Renyi Zhang

Nowadays, the global fish consumption continues to rise along with the continuous growth of the population, which has led to the dilemma of overfishing of fishery resources. Especially high-value fish that are overfished are often replaced by other fish. Therefore, the accurate identification of fish products in the market is a problem worthy of attention. In this study, full-DNA barcoding (FDB) and mini-DNA barcoding (MDB) used to detect the fraud of fish products in Guiyang, Guizhou province in China. The molecular identification results showed that 39 of the 191 samples were not consistent with the labels. The mislabelling of fish products for fresh, frozen, cooked and canned were 11.70%, 20.00%, 34.09% and 50.00%, respectively. The average kimura 2 parameter distances of MDB within species and genera were 0.27% and 5.41%, respectively; while average distances of FDB were 0.17% within species and 6.17% within genera. In this study, commercial fraud is noticeable, most of the high-priced fish were replaced of low-priced fish with a similar feature. Our study indicated that DNA barcoding is a valid tool for the identification of fish products and that it allows an idea of conservation and monitoring efforts, while confirming the MDB as a reliable tool for fish products.


IAWA Journal ◽  
2020 ◽  
Vol 41 (4) ◽  
pp. 620-643 ◽  
Author(s):  
Lichao Jiao ◽  
Yang Lu ◽  
Tuo He ◽  
Juan Guo ◽  
Yafang Yin

Abstract DNA barcoding technology has emerged as one of the most promising tools available to identify timber at the species level, contributing to the monitoring of the timber trade and the conservation of forestry sources. This paper reviews the progress, challenges, and existing problems in the development of DNA barcoding for wood identification in the last ten years. There is a focus on the optimization of DNA extraction methods for processed or ancient wood, the strategy of screening high-resolution DNA barcodes suitable for wood identification, the development of a wood DNA reference database especially for priority taxa, and the comparison and comprehensive application of sequence analytical methods to achieve accurate identification. In addition to DNA barcoding, the feasibility of other genetic methods for wood identification is also discussed. Furthermore, future research orientation and strategy of wood DNA barcoding are presented. We argue that wood DNA barcoding integrated with other methodologies including wood anatomy can offer an effective approach and a new perspective to promote legal logging for timber trade custody and global biodiversity conservation.


Zootaxa ◽  
2012 ◽  
Vol 3191 (1) ◽  
pp. 21 ◽  
Author(s):  
VEERLE VERSTEIRT ◽  
JAMES E. PECOR ◽  
DINA M. FONSECA ◽  
MARC COOSEMANS ◽  
WIM VAN BORTEL

In 2008, specimens resembling Aedes (Finlaya) koreicus (Edwards) (also Ochlerotatus koreicus or Hulecoeteomyia kore-ica) were found in Belgium during a national mosquito survey (MODIRISK). Small but consistent differences were, how-ever, observed between the specimens described from Peninsula Korea and those found in Belgian. To achieve the correctidentification a detailed morphological comparison was made between the Belgian specimens and reference material fromKorean mainland and island populations housed at the Smithsonian Institution (Walter Reed Biosystematics Unit (WR-BU), Washington, USA). The identification was furthermore supported by molecular evidence based on the ND4 region(mtDNA) of available Korean and Belgian mosquito specimens. Morphological and molecular comparison confirmed theinitial identification of Aedes koreicus. Based on morphological characteristics, the species collected in Belgium mostlikely originated from Jeju-do, an island south of the Korean Peninsula. The observed dissimilarities between Korean andBelgian specimens resembled a number of morphological differences mentioned previously between female adults col-lected on the Korean Peninsula and Jeju-do. This is the first report of Aedes koreicus outside its natural distribution range.A correct and rapid identification of new invading and spreading vector species is crucial for the implementation of effec-tive control measurements. Hence a correct and easy accessible description of all possible variations of species arrivingin new areas is highly recommended. Therefore, a comparative morphological study on the Smithsonian material of thespecies from Korean mainland, island population and from Belgium is given, pictures of the main aberrant characteristicsand scanning electron microscope images of all stages of the species are included and molecular confirmation of the identification based on the mtDNA ND4 region is provided.


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