Is Hydroides brachyacantha (Serpulidae : Annelida) a widespread species?

2016 ◽  
Vol 30 (1) ◽  
pp. 41 ◽  
Author(s):  
Yanan Sun ◽  
Eunice Wong ◽  
María Ana Tovar-Hernández ◽  
Jane E. Williamson ◽  
Elena K. Kupriyanova
Keyword(s):  
Gulf Of California ◽  
Phylogenetic Analyses ◽  
South Australia ◽  
Distinct Species ◽  
Molecular Data ◽  
Sensu Stricto ◽  
Type Locality ◽  
Genetic Lineage ◽  
Widespread Species ◽  
Mexican Pacific

Hydroides brachyacantha Rioja, 1941, an important fouling serpulid species originally described from Mazatlán (Southern Gulf of California, Mexico) and Acapulco (southern Mexican Pacific), has been reported from the Mexican Pacific and numerous tropical and subtropical localities. However, a recent description of H. amri Sun, Wong, ten Hove, Hutchings, Williamson & Kupriyanova, 2015 from Australia, which was historically misidentified as H. brachyacantha, suggested that the widespread ‘H. brachyacantha’ is indeed a species complex. To test the status of H. amri, we conducted phylogenetic analyses based on a combined dataset of 18S rRNA, internal transcribed spacer-2, and cytochrome b sequences of H. brachyacantha from the type locality in Mexico with those of H. amri from Australia. Our molecular data supported the morphology-based hypothesis of H. amri and H. brachyacantha sensu stricto as two distinct species. Furthermore, H. amri comprises two non-sister well-supported clades. Hydroides amri thus comprises what we consider two cryptic species with long-term isolation. Here we describe the genetic lineage in South Australia as Hydroides nikae, sp. nov. Given the absence of a holotype of H. brachyacantha, we designate a neotype collected from the type locality (Mazatlán, Mexico). This study calls for a worldwide revision of the H. brachyacantha-complex.

Morphological and molecular characterization of two species of Gelidium (Gelidiales, Rhodophyta) from Mexico: G. nayaritense sp. nov. and the new record of G. sanyaense

Phytotaxa ◽  
2021 ◽  
Vol 527 (3) ◽  
pp. 161-176
Author(s):  
NATALY QUIROZ-GONZÁLEZ ◽  
MA. EDITH PONCE-MÁRQUEZ ◽  
NORMA LÓPEZ-GÓMEZ ◽  
DENÍ RODRÍGUEZ
Keyword(s):  
Gulf Of California ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Tropical Region ◽  
Mexican Pacific ◽  
Molecular Approaches ◽  
Diagnostic Characteristics ◽  
Morphological Differences ◽  
First Time

Gelidium pusillum is a species reported from the northern Gulf of California to the tropical region of the Mexican Pacific, but there is wide morphological variation among populations. The objective of this research was to evaluate of the Mexican species using morphological and molecular approaches, with the markers rbcL and COI-5P. This study examined 12 samples from four sites in the Mexican tropical Pacific. Phylogenetic analyses resolved these specimens within two clades separated from the topotype material of G. pusillum. The main morphological differences with other Mexican and phylogenetic closely related species were size, branching pattern, branching order, distribution of internal rhizoidal filaments, and shape of the tetrasporangial sori. The sequence divergences between these clades and the morphological differences support their representing distinct species so that Gelidium nayaritense sp. nov. is proposed for tropical specimens of the Mexican Pacific, whose diagnostic characteristics are the little or absent branching, its small size, as well as the presence of internal rhizoidal filaments concentrated in the subcortex, further G. sanyaense is register for first time from Mexico and Eastern Pacific.

Gelidium gonzalezii sp. nov. (Gelidiales, Rhodophyta) from the Mexican tropical Pacific based on molecular and morphological evidence

Phytotaxa ◽  
2020 ◽  
Vol 459 (2) ◽  
pp. 124-138
Author(s):  
NATALY QUIROZ-GONZÁLEZ ◽  
MA. EDITH PONCE-MÁRQUEZ ◽  
CINDY FERNÁNDEZ-GARCÍA ◽  
DENÍ RODRÍGUEZ
Keyword(s):  
Gulf Of California ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Tropical Pacific ◽  
Central American ◽  
Morphological Evidence ◽  
Tropical Region ◽  
Mexican Pacific ◽  
Pattern Shape ◽  
Morphological Differences

There are currently 23 reported species of Gelidium in Mexican Pacific coastal waters. Many of these species require taxonomic verification. Gelidium sclerophyllum is a species reported from the northern Gulf of California to the tropical region of the Mexican Pacific, but there is large morphological variation among populations. The objective of this research was to evaluate this species using a morphological and molecular approach, with COI-5P and rbcL molecular markers. A total of 13 samples were collected from five sites in the Mexican Tropical Pacific. Phylogenetic analyses resolved these specimens within a separate clade from that which includes the type of G. sclerophyllum and other Central American specimens. Differences with other species are subtle and based mainly on size, branching pattern, shape of tetrasporangia sori and size of tetraspores. The sequence divergences and the subtle morphological differences between these two clades support their recognition as two distinct species, and Gelidium gonzalezii sp. nov. is proposed for specimens from the Mexican Tropical Pacific.

scholarly journals An integrative approach to the systematics of the Berthella californica species complex (Heterobranchia: Pleurobranchidae)

2020 ◽  
Vol 86 (3) ◽  
pp. 186-200
Author(s):  
Hessam Ghanimi ◽  
Jeffrey H R Goddard ◽  
Anton Chichvarkhin ◽  
Terrence M Gosliner ◽  
Dae-Wui Jung ◽  
...  
Keyword(s):  
North Pacific Ocean ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Type Locality ◽  
Morphological Data ◽  
Integrative Approach ◽  
Egg Mass ◽  
Small Range ◽  
Widespread Species ◽  
The North

Abstract Berthella californica (W. H. Dall, 1900) is a widespread species of heterobranch sea slug distributed across the North Pacific Ocean, from Korea and Japan to the Galapagos Islands. Two distinct morphotypes are observed in B. californica, which differ in external coloration, egg-mass morphology and geographic distribution (with the exception of a small range overlap in Southern California). Molecular and morphological data obtained in this study reveals that these two morphotypes constitute distinct species. The name B. californica (type locality: San Pedro, California) is retained for the southern morphotype, whereas the name Berthella chacei (J. Q. Burch, 1944) (type locality: Crescent City, California) is resurrected for the northern morphotype. Moreover, molecular phylogenetic analyses recovered B. californica as sister to Berthellina, in a well-supported clade separate from Berthella, suggesting that the classification of B. californica may need additional revision.

scholarly journals A re-examination of the molecular systematics and phylogeography of taxa of the Peromyscus aztecus species group, with comments on the distribution of P. winkelmanni

Therya ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 331-346
Author(s):  
C. William Kilpatrick ◽  
Nelish Pradhan ◽  
Ryan W Norris
Keyword(s):  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Molecular Study ◽  
Molecular Data ◽  
Species Group ◽  
Cytb Sequence ◽  
Voucher Specimen ◽  
Cranial Measurements ◽  
Mitochondrial Cytochrome B ◽  
Isthmus Of Tehuantepec

The objectives of this study are to examine the available molecular data from the mitochondrial cytochrome-b gene (Cytb) and a concatenated dataset with this gene and two nuclear introns (Adh-1-I2 and Fgb-I7) to reexamine the systematic and phylogeographic conclusions reached by Sullivan et al. (1997) concerning the Peromyscus aztecus species group. The divergence of samples of P. aztecus oaxacensis across the Isthmus of Tehuantepec are further examined and taxonomic revisions are suggested. In addition, this study reviews the sources of data that lead to the conclusion that P. winkelmanni occurred in the Sierra Madre del Sur in Guerrero including a morphometric examination of a reported voucher. Bayesian and maximum likelihood analyses were conducted on a dataset of 31 Cytb sequences of all taxa in the P. aztecus group except for P. a. cordillerae and a concatenated dataset including five individuals of this group. Representative taxa of the P. boylii, P. mexicanus, and P. truei groups were included in both analyses. Body and cranial measurements of the voucher of the P. winkelmanni from Guerrero from which a Cytb sequence is reported to have been obtained was compared with measurements from specimens taken from the vicinity of Dos Aguas, Michoacán, including the type locality. We identified seven instances involving problematic identifications in GenBank. Once these issues were addressed, well-supported monophyletic sister clades of the P. aztecus and P. boylii species groups were recovered from phylogenetic analyses of Cytb sequences (Fig 1). Phylogenetic analyses of the Cytb and the concatenated datasets recover similar topologies that support the relationships of taxa of the aztecus group proposed by an earlier molecular study. Populations of P. a. oaxacensis southeast of the Isthmus of Tehuantepec represent a distinct species. Measurements of the voucher from Guerrero identified as the source of a P. winkelmanni Cytb sequence are smaller than P. winkelmanni for several characters. The divergent populations of P. a. oaxacensis from southeast of the Isthmus of Tehuantepec are recognized as two subspecies of P. cordillerae, P. c. cordillerae and P. c. hondurensis, whereas those northwest of the Isthmus are retained as P. a. oaxacensis. The lack of genetic divergence observed between P. a. evides and P. a. oaxacensis questions whether these two taxa should continue to be recognized as separate subspecies. Northern and southern populations of P. spicilegus demonstrate moderate divergence and additional examination of morphological and molecular differentiation within this taxon is warranted. The distribution of P. winkelmanni should be restricted to the vicinity of Dos Aguas, Michoacán, due to the lack of a voucher specimen that would confirm its reported occurrence in Guerrero.

Cryptic species complexes in manipulative echinostomatid trematodes: when two become six

Parasitology ◽  
2008 ◽  
Vol 136 (2) ◽  
pp. 241-252 ◽  
Author(s):  
T. L. F. LEUNG ◽  
D. B. KEENEY ◽  
R. POULIN
Keyword(s):  
Cryptic Species ◽  
Phylogenetic Analyses ◽  
Morphological Characteristics ◽  
Single Species ◽  
Distinct Species ◽  
Molecular Data ◽  
Spatial Segregation ◽  
Small Scale ◽  
Intermediate Hosts ◽  
Species Complexes

SUMMARYRecent studies have shown that some digenean trematodes previously identified as single species due to the lack of distinguishing morphological characteristics actually consist of a number of genetically distinct cryptic species. We obtained mitochondrial 16S and nuclear ITS1 sequences for the redial stages of Acanthoparyphium sp. and Curtuteria australis collected from snails and whelks at various locations around Otago Peninsula, New Zealand. These two echinostomes are well-known host manipulators whose impact extends to the entire intertidal community. Using phylogenetic analyses, we found that Acanthoparyphium sp. is actually composed of at least 4 genetically distinct species, and that a cryptic species of Curtuteria occurs in addition to C. australis. Molecular data obtained for metacercariae dissected from cockle second intermediate hosts matched sequences obtained for Acanthoparyphium sp. A and C. australis rediae, respectively, but no other species. The various cryptic species of both Acanthoparyphium and Curtuteria also showed an extremely localized pattern of distribution: some species were either absent or very rare in Otago Harbour, but reached far higher prevalence in nearby sheltered inlets. This small-scale spatial segregation is unexpected as shorebird definitive hosts can disperse trematode eggs across wide geographical areas, which should result in a homogeneous mixing of the species on small geographical scales. Possible explanations for this spatial segregation of the species include sampling artefacts, local adaptation by first intermediate hosts, environmental conditions, and site fidelity of the definitive hosts.

Revision of theAlpheus cristulifronsspecies complex (Crustacea: Decapoda: Alpheidae), with description of a new species from the tropical eastern Atlantic

2008 ◽  
Vol 88 (3) ◽  
pp. 543-562 ◽  
Author(s):  
Arthur Anker ◽  
Carla Hurt ◽  
Nancy Knowlton
Keyword(s):  
Gulf Of California ◽  
Molecular Data ◽  
Sensu Stricto ◽  
Eastern Pacific ◽  
Gulf Of Guinea ◽  
Western Atlantic ◽  
Sister Clade ◽  
The Caribbean ◽  
Colour Patterns ◽  
A New Species

The taxonomy of the snapping shrimpAlpheus cristulifronsRathbun, 1900, previously reported from the eastern Pacific and western and eastern Atlantic, is reviewed based on molecular data (COI), morphology and colour patterns. Three species are recognized in theA. cristulifronsspecies complex.Alpheus cristulifrons sensu strictois restricted to the western Atlantic, ranging from Florida and the Caribbean Sea to southern Brazil. The eastern PacificA. cristulifrons sensuKim & Abele, 1988 corresponds toA. utriensisRamos & Von Prahl, 1989, ranging from the Gulf of California to Colombia; this species can be separated fromA. cristulifronsby the absence of balaeniceps setae on the male minor chela and the presence of bands on the antennular and antennal flagella. The eastern AtlanticA. cristulifronssensuCrosnier & Forest, 1966 is described asA. xanthocarpussp. nov. based on recently collected material from the island of São Tomé in the Gulf of Guinea; this species differs fromA. cristulifronsby the posteriorly more extending rostral carina and the presence of conspicuous yellow spots on the carpus and chela of the second pereiopod. Molecular data suggest thatA. utriensisis the eastern Pacific sister clade to the amphi-Atlntic clade that includesA. cristulifronsandA. xanthocarpussp. nov.

Morphological and molecular identification of a new species of Perenniporia (Polyporales, Basidiomycota) in North America

Phytotaxa ◽  
2018 ◽  
Vol 351 (1) ◽  
pp. 63
Author(s):  
SHAN SHEN ◽  
TAI-MIN XU ◽  
JASON KARAKEHIAN ◽  
CHANG-LIN ZHAO
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Strong Support ◽  
Molecular Data ◽  
Sensu Stricto ◽  
Fungal Species ◽  
Monophyletic Lineage ◽  
Inference Methods ◽  
Molecular Characters

A new poroid wood-inhabiting fungal species, Perenniporia bostonensis sp. nov., is proposed based on morphological and molecular characters. The species is characterized by resupinate, cream to buff pore surface; a dimitic hyphal system with skeletal hyphae strongly dextrinoid, unbranched, interwoven and a distinct wide lumen; ovoid to broad ellipsoid, non-truncate, hyaline, distinct thick-walled, smooth, dextrinoid basidiospores, 3.5–4.5 × 3–4 µm. The internal transcribed spacer (ITS) and the large subunit (LSU) regions of nuclear ribosomal RNA gene sequences of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood, maximum parsimony and bayesian inference methods. The phylogenetic analysis based on molecular data of ITS+nLSU sequences showed that P. bostonensis recognized in Perenniporia sensu stricto. The new species formed a monophyletic lineage with a strong support (100% BS, 100% BP, 1.00 BPP) and was closely related to P. bannaensis and P. koreana. Both morphological and molecular characters confirmed the placement of the new species in Perenniporia.

scholarly journals Molecular Characterization of the Fusarium graminearum Species Complex in Japan

2008 ◽  
Vol 98 (2) ◽  
pp. 159-166 ◽  
Author(s):  
H. Suga ◽  
G. W. Karugia ◽  
T. Ward ◽  
L. R. Gale ◽  
K. Tomimura ◽  
...  
Keyword(s):  
Fusarium Graminearum ◽  
Species Complex ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Sensu Stricto ◽  
Rflp Markers ◽  
Differential Distribution ◽  
The North ◽  
Pcr Rflp ◽  
Fusarium Graminearum Species Complex

Members of the Fusarium graminearum species complex are important cereal pathogens worldwide and belong to one of at least nine phylogenetically distinct species. We examined 298 strains of the F. graminearum species complex collected from wheat or barley in Japan to determine the species and trichothecene chemotype. Phylogenetic analyses and species-diagnostic polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLPs) revealed the presence and differential distribution of F. graminearum sensu stricto (s. str.) and F. asiaticum in Japan. F. graminearum s. str. is predominant in the north, especially in the Hokkaido area, while F. asiaticum is predominant in southern regions. In the Tohoku area, these species co-occurred. Trichothecene chemotyping of all strains by multiplex PCR revealed significantly different chemotype compositions of these species. All 50 strains of F. graminearum s. str. were of a 15- or 3-acetyl deoxynivalenol type, while 173 (70%) out of 246 strains of F. asiaticum were of a nivalenol type. The possibility of gene flow between the two species was investigated by use of 15 PCR-RFLP markers developed in this study. However, no obvious hybrids were detected from 98 strains examined, including strains collected from regions where both species co-occur.

scholarly journals Morphological and molecular differences between the Amphiamerican populations of Antillesoma (Sipuncula: Antillesomatidae), with the description of a new species

2019 ◽  
Vol 67 (S5) ◽  
pp. S101-S109
Author(s):  
Itzahí Silva-Morales ◽  
Mónica J. López-Aquino ◽  
Valentina Islas-Villanueva ◽  
Fernando Ruiz-Escobar ◽  
J. Rolando Bastida-Zavala
Keyword(s):  
Marine Invertebrates ◽  
Phylogenetic Reconstruction ◽  
Sister Group ◽  
Molecular Data ◽  
Sensu Stricto ◽  
Genetic Distances ◽  
Likelihood Method ◽  
Tropical Eastern Pacific ◽  
Mexican Pacific ◽  
The Caribbean

Introduction: The sipunculans are a group of marine invertebrates that have been little studied in the tropical eastern Pacific (TEP). Antillesoma antillarum is a species belonging to the monospecific family Antillesomatidae, considered widely distributed in tropical and subtropical localities across the globe. Objective: The main objective of this work was to examine the morphological and molecular differences between specimens from both coasts of tropical America to clarify the taxonomy of this species. Methods: We examined the morphology with material from the Mexican Caribbean and southern Mexican Pacific. To perform molecular analyses, two sequences of the COI molecular marker were obtained from specimens collected in Panteón Beach, Oaxaca, southern Mexican Pacific, and compared with four sequences identified as A. antillarum in GenBank, all of them from different localities. A phylogenetic reconstruction was performed with the maximum likelihood method and genetic distances were calculated with the Kimura 2P model and compared to reference values. Results: The phylogenetic analysis revealed three different lineages of Antillesoma that are well supported by bootstrap values: Antillesoma antillarum sensu stricto from the Caribbean Sea and Florida; a sister group to the one represented by our samples from the Mexican Pacific; and a third group from Thailand. Conclusion: Based on morphological traits and molecular data, Antillesoma mexicanum sp. nov. is described from the Mexican Pacific, differing from A. antillarum in the trunk papillae, color patterns and, additionally, the specimens from the Caribbean attain significantly bigger trunk sizes than the ones Pacific.

scholarly journals Contribution to chromosome numbers and phylogeny of Turkish Vincetoxicum Wolf (Apocynaceae, Asclepiadoideae)

2019 ◽  
Author(s):  
Seher Güven ◽  
Serdar Makbul ◽  
Kamil Coşkunçelebì
Keyword(s):  
Chromosome Numbers ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Sensu Stricto ◽  
Species Level ◽  
Nrdna Its ◽  
Chromosome Counts ◽  
As Species ◽  
Molecular Phylogenetic

We report chromosome counts for ten taxa of Vincetoxicum sensu stricto (s. str.) (Apocynaceae) from Turkey (of which two are endemic), including the first chromosome counts for V. canescens subsp. pedunculata, V. funebre, V. fuscatum subsp. boissieri, V. parviflorum and V. tmoleum. Two taxa of V. fuscatum proved to be tetraploid (2n=44) and the remaining eight taxa diploid (2n=22). Molecular phylogenetic analyses based on nrDNA (ITS) and cpDNA (trnT-trnL) (including 31 newly generated sequences) confirm the position of the Turkish Vincetoxicum in the Vincetoxicum s. str. clade. Vincetoxicum fuscatum, V. parviflorum, V. speciosum, as well as the Turkish endemic V. fuscatum subsp. boissieri, were clearly resolved as species-level clades, whereas the delimitation of the rest of the Turkish taxa was less clear based on molecular data.

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