scholarly journals Monophyly and phylogenetic origin of the gall crab family Cryptochiridae (Decapoda : Brachyura)

2014 ◽  
Vol 28 (5) ◽  
pp. 491 ◽  
Author(s):  
Sancia E. T. van der Meij ◽  
Christoph D. Schubart
Keyword(s):  
Phylogenetic Position ◽  
Monophyletic Clade ◽  
Morphological Studies ◽  
The Family ◽  
Phylogenetic Origin ◽  
Gall Crabs

The enigmatic gall crab family Cryptochiridae has been proposed to be phylogenetically derived from within the Grapsidae (subsection Thoracotremata), based on the analysis of 16S mtDNA of one cryptochirid, Hapalocarcinus marsupialis, among a wide array of thoracotremes, including 12 species of the family Grapsidae. Here, we test the monophyly and phylogenetic position of Cryptochiridae using the same gene, but with an extended representation of cryptochirids spanning nine species in eight of 21 genera, in addition to further thoracotreme representatives. The results show that gall crabs form a highly supported monophyletic clade within the Thoracotremata, which evolved independently of grapsid crabs. Therefore, the Cryptochiridae should not be considered as highly modified Grapsidae, but as an independent lineage of Thoracotremata, deserving its current family rank. Further molecular and morphological studies are needed to elucidate the precise placement of the cryptochirids within the Eubrachyura.

Contribution to the Morphology of a Pine Web-spinning Sawfly, Cephalcia marginata Middlekauff (Hymenoptera: Pamphiliidae)

1955 ◽  
Vol 87 (9) ◽  
pp. 382-399 ◽  
Author(s):  
I. Rivard
Keyword(s):  
Phylogenetic Position ◽  
Morphological Studies ◽  
The Family ◽  
The Subject

In studies of sawflies, the family Pamphiliidae has been much neglected especially from the morphological stand point. Yuasa (1922) made a study of the larvae, but the genus Cephalcia was dealt with rather briefly. Ross (1937) and Benson (1945) made comparative morphological studies of the adults and showed the phylogenetic position of the family. More recently, Middlekauff (1953) published a description of Cephalcia marginata, a pine web-spinning sawfly which was the subject of the present study.

Three new remarkable amphipod species (Crustacea: Gammaridae) from springs and subterranean waters of Central Asia

Zootaxa ◽  
2018 ◽  
Vol 4444 (4) ◽  
pp. 437 ◽  
Author(s):  
DMITRY SIDOROV ◽  
ZHONGE HOU ◽  
BORIS SKET
Keyword(s):  
New Species ◽  
Central Asia ◽  
Dna Barcode ◽  
Phylogenetic Position ◽  
Amphipod Species ◽  
Small Areas ◽  
Morphological Studies ◽  
The Family ◽  
Three New Species ◽  
Subterranean Waters

Three new species of the family Gammaridae—Gammarus troglomorphus, sp. n., G. parvioculatus, sp. n. from Lebap Province of Turkmenistan and Tadzocrangonyx alaicus, sp. n. from Batken Region of Kyrgyzstan are described and illustrated. Morphological studies of a closely related Turkmenistan population of G. cf. subaequalis-Garlyk, probably conspecific with Gammarus subaequalis Martynov, 1935 was provided. The affinity of new species to concerned taxa is discussed. To define phylogenetic position of mentioned species DNA barcode data are obtained. Gammarus troglomorphus and G. parvioculatus are close neighbors but exceedingly different morphologically. Gammarus troglomorphus is a troglobiont; G. parvioculatus is an eutroglophile, but with exception of slightly smaller eyes, not troglomorph. Both found only within small areas in the extreme East of Turkmenistan. Gammarus cf. subaequalis-Garlyk seems to extend from the same region far into the eastern Kyrgyzstan. 

On the placement of Coleanthus subtilis and the subtribe Coleanthinae within Poaceae by new molecular phylogenetic data

Phytotaxa ◽  
2020 ◽  
Vol 468 (3) ◽  
pp. 243-274
Author(s):  
ALEXANDER A. GNUTIKOV ◽  
NIKOLAI N. NOSOV ◽  
ELIZAVETA O. PUNINA ◽  
NINA S. PROBATOVA ◽  
ALEXANDER V. RODIONOV
Keyword(s):  
Phylogenetic Analysis ◽  
Morphological Features ◽  
Molecular Phylogenetic Analysis ◽  
Phylogenetic Position ◽  
Chloroplast Genes ◽  
Monophyletic Clade ◽  
Morphological Studies ◽  
Molecular Phylogenetic ◽  
The Relationship ◽  
Molecular Phylogenetic Data

Phylogenetic position of the unique grass genus Coleanthus within the tribe Poeae s. str. is discussed based on molecular phylogenetic analysis of the marker sequences, ITS and trnL–trnF. Moreover, taxa more or less related to Coleanthus were involved in our study for the maximal accuracy of the molecular phylogenetic analysis. Subtribe Coleanthinae (=Puccinelliinae) is monophyletic according to both datasets, nuclear and chloroplast genes, that probably shows certain evolutionary distance from other Poeae s. str. We confirmed the results of previous morphological studies that placed Coleanthus close to the genus Phippsia but at the same time we have not found any evidences of the affinity between the genus Phippsia and the second putative ancestor, Deschampsia. The clade which contains Coleanthus and Phippsia occupies the sister position to all other genera of the subtribe Coleanthinae. The genus Phippsia produces hybrids with Puccinellia, ×Pucciphippsia, but the relationship obtained by our data is far more distant that was considered before from its morphological features. The genus Puccinellia forms a single monophyletic clade—sister to the genus Sclerochloa and former Colpodium s. l. (Paracolpodium, Catabrosella) which are monophyletic with Catabrosa. In partial contradiction to previous research (Soreng et al. 2015)—we found that the subtribe Coleanthinae is rather distant from two-chromosome grasses in ITS analysis though chloroplast genes show the sister position of the species from the 2-chromosome grasses group, Colpodium versicolor (2n = 4), to Coleanthinae. Also we detected multiple reticulation events in the tribe Poeae s. str. and some of them—within the subtribe Coleanthinae. This can explain an uncertain position of the two-chromosome grasses in relation to Coleanthinae.

The systematic position of Diopsina Curran, 1928 (Diptera: Diopsidae) inferred from DNA sequence data

2010 ◽  
Vol 41 (3) ◽  
pp. 295-302 ◽  
Author(s):  
Martin Carr ◽  
Michael Balke ◽  
Marion Kotrba
Keyword(s):  
Sequence Data ◽  
Sister Group ◽  
Morphological Characters ◽  
Systematic Position ◽  
Phylogenetic Position ◽  
Sister Group Relationship ◽  
Crucial Importance ◽  
Monophyletic Clade ◽  
Dna Sequence Data ◽  
The Family

AbstractThe placement of Diopsina in a monophyletic clade with Diopsis and Eurydiopsis is confirmed and a sister group relationship between Diopsina and Diopsis recovered with moderate support. The clarification of the phylogenetic position of Diopsina nested deeply within Diopsini is of crucial importance for the understanding of the relationships and the evolution of various morphological characters within the family.

Resolving the Lourinia armata (Claus, 1866) complex with remarks on the monophyletic status of Louriniidae, Monard 1927 (Copepoda: Harpacticoida)

Zootaxa ◽  
2021 ◽  
Vol 5051 (1) ◽  
pp. 346-386
Author(s):  
SÜPHAN KARAYTUĞ ◽  
SERDAR SAK ◽  
ALP ALPER ◽  
SERDAR SÖNMEZ
Keyword(s):  
Comparative Evaluation ◽  
Species Complex ◽  
Detailed Examination ◽  
The Other ◽  
Phylogenetic Position ◽  
Nicobar Island ◽  
Other Hand ◽  
The Family ◽  
Close Relationship ◽  
Almost All

An attempt was made to test if Lourinia armata (Claus, 1866)—as it is currently diagnosed—represents a species complex. Detailed examination and comparisons of several specimens collected from different localities suggest that L. armata indeed represents a complex of four closely related morphospecies that can be differentiated from one another by only detailed observations. One of the four species is identified as Lourinia aff. armata and the other three species are described as new to science and named as Lourinia wellsi sp. nov., L. gocmeni sp. nov., and L. aldabraensis sp. nov. Detailed review of previous species records indicates that the genus Lourinia Wilson, 1924 is distributed worldwide. Ceyloniella nicobarica Sewell, 1940, originally described from Nicobar Island and previously considered a junior subjective synonym of L. armata is reinstated as Lourinia nicobarica (Sewell, 1940) comb. nov. on the basis of the unique paddle-shaped caudal ramus seta V. It is postulated that almost all of these records are unreliable in terms of representing true Lourinia aff. armata described herein. On the other hand, the comparative evaluation of the illustrations and descriptions in the published literature indicates the presence of several new species waiting to be discovered in the genus Lourinia.                 It has been determined that, according to updated modern keys, the recent inclusion of the monotypic genus Archeolourinia Corgosinho & Schizas, 2013 in the Louriniidae is not justified since Archeolourinia shermani Corgosinho & Schizas, 2013 does not belong to this family but should be assigned to the Canthocamptidae. On the other hand, it has been argued that the exact phylogenetic position of the Louriniidae still remains problematic since none of the diagnostic characters supports the monophyly of the family within the Oligoarthra. It has also been argued that the close relationship between Louriniidae and Canthocamptidae is supported since both families share the homologous sexual dimorphism (apophysis) on P3 endopod. The most important characteristic that can possibly be used to define Louriniidae is the reduction of maxilliped.  

Morphology of a unique ophidiid, Hypopleuron caninum Radcliffe 1913 (Ophidiiformes, Ophidiidae, Neobythitinae), suggesting a close relationship with the family Carapidae

Zootaxa ◽  
2018 ◽  
Vol 4521 (4) ◽  
pp. 499
Author(s):  
SHINPEI OHASHI
Keyword(s):  
Phylogenetic Position ◽  
Dorsal Fin ◽  
The Family ◽  
Close Relationship ◽  
Pelvic Fin

Osteological and myological characters of the ophidiid Hypopleuron caninum are described here in detail. In addition to well-known characters of Ophidiidae (e.g., anal-fin origin well posterior to dorsal-fin origin; barbel-like pelvic fin; many scales), many unique or rare conditions were also recognized, including predorsal bone and maxilla condition, and canine teeth on the premaxilla, which were suggestive of a relationship with Carapidae. Furthermore, the predorsal bone appear to be homologous with the vexillar support, a carapid synapomorphy. Although several characters differ from carapid counterparts (e.g., more anterior anal-fin origin and scales absent in Carapidae), some intermediate conditions between Ophidiidae and Carapidae are apparent in Hypopleuron caninum, which may therefore occupy an intermediate phylogenetic position between the two families. A unique morphology of small second infraorbital bone is recognized in all ophidiiform species observed in this study, and it may be a synapomorphic character of the order Ophidiiformes. 

scholarly journals A highly contiguous nuclear genome assembly of the mandarinfish Synchiropus splendidus (Syngnathiformes: Callionymidae)

2021 ◽  
Author(s):  
Martin Stervander ◽  
William A Cresko
Keyword(s):  
Genome Assembly ◽  
Nuclear Genome ◽  
Phylogenetic Position ◽  
Blue Color ◽  
Long Reads ◽  
The Family ◽  
Commercially Important ◽  
Genomic Resource ◽  
Genome Assemblies ◽  
Important Fish

Abstract The fish order Syngnathiformes has been referred to as a collection of misfit fishes, comprising commercially important fish such as red mullets as well as the highly diverse seahorses, pipefishes, and seadragons—the well-known family Syngnathidae, with their unique adaptations including male pregnancy. Another ornate member of this order is the species mandarinfish. No less than two types of chromatophores have been discovered in the spectacularly colored mandarinfish: the cyanophore (producing blue color) and the dichromatic cyano-erythrophore (producing blue and red). The phylogenetic position of mandarinfish in Syngnathiformes, and their promise of additional genetic discoveries beyond the chromatophores, made mandarinfish an appealing target for whole genome sequencing. We used linked sequences to create synthetic long reads, producing a highly contiguous genome assembly for the mandarinfish. The genome assembly comprises 483 Mbp (longest scaffold 29 Mbp), has an N50 of 12 Mbp, and an L50 of 14 scaffolds. The assembly completeness is also high, with 92.6% complete, 4.4% fragmented, and 2.9% missing out of 4,584 BUSCO genes found in ray-finned fishes. Outside the family Syngnathidae, the mandarinfish represents one of the most contiguous syngnathiform genome assemblies to date. The mandarinfish genomic resource will likely serve as a high-quality outgroup to syngnathid fish, and furthermore for research on the genomic underpinnings of the evolution of novel pigmentation.

scholarly journals The genus Microniphargus (Crustacea, Amphipoda): evidence for three lineages distributed across northwestern Europe and transfer from Niphargidae to Pseudoniphargidae

2021 ◽  
Vol 151 ◽  
Author(s):  
Dieter Weber ◽  
Fabio Stoch ◽  
Lee R.F.D. Knight ◽  
Claire Chauveau ◽  
Jean-François Flot
Keyword(s):  
Cytochrome C ◽  
Cytochrome C Oxidase ◽  
Phylogenetic Analyses ◽  
Ribosomal Gene ◽  
Phylogenetic Position ◽  
Mitochondrial Cytochrome ◽  
Monotypic Genus ◽  
Centre Of Origin ◽  
Phylogenetic Studies ◽  
The Family

Microniphargus leruthi Schellenberg, 1934 (Amphipoda: Niphargidae) was first described based on samples collected in Belgium and placed in a monotypic genus within the family Niphargidae. However, some details of its morphology as well as recent phylogenetic studies suggest that Microniphargus may be more closely related to Pseudoniphargus (Amphipoda: Pseudoniphargidae) than to Niphargus. Moreover, M. leruthi ranges over 1,469 km from Ireland to Germany, which is striking since only a few niphargids have confirmed ranges in excess of 200 km. To find out the phylogenetic position of M. leruthi and check whether it may be a complex of cryptic species, we collected material from Ireland, England and Belgium then sequenced fragments of the mitochondrial cytochrome c oxidase subunit 1 gene as well as of the nuclear 28S ribosomal gene. Phylogenetic analyses of both markers confirm that Microniphargus is closer to Pseudoniphargus than to Niphargus, leading us to reallocate Microniphargus to Pseudoniphargidae. We also identify three congruent mito-nuclear lineages present respectively in Ireland, in both Belgium and England, and in England only (with the latter found in sympatry at one location), suggesting that M. leruthi is a complex of at least three species with a putative centre of origin in England.

scholarly journals Kahawai Phylogeny and Phylogenetics:  A Genetic Investigation into Commercial and Recreational Fisheries Management and Practice

2021 ◽  
Author(s):  
◽  
Brenton Hodgson
Keyword(s):  
New Zealand ◽  
Common Ancestor ◽  
Coastal Communities ◽  
Commercial Fishing ◽  
Recreational Fisheries ◽  
Monophyletic Clade ◽  
Genetic Investigation ◽  
Fish Stocks ◽  
Modern Times ◽  
The Family

<p>Globally, commercially exploited fish species are coming under more and more pressure as the population of humans grow. Protein from the sea has traditionally been available to coastal communities throughout history. In modern times however, traditional artisanal fisheries have been replaced by commercial fishing industries. It is estimated by some authorities that these modern fisheries have led to decreases in pre-exploitation biomass of desirable species of up to 90%. As desirable species decline, secondary species become more valuable and subject to exploitation. An issue with this exploitation is that management decisions of fish stocks are often based on political or commercial concerns rather than sound science focussed on preserving stocks, and ultimately, fishing industries. To investigate phylogenetic and phylogeographic relationships of fish, kahawai (Arripis trutta) was used as a proxy species. A. trutta is one of only four members of the genus Arripis, which in turn is the sole member of the family Arripidae. It was found that a single, highly connected population of A. trutta inhabit New Zealand waters, and approximately 15 migrants per generation make the journey between New Zealand and Australia, genetically linking these populations. A phylogeny of A. trutta was resolved using mitochondrial DNA, and while COX1 data supported the hypothesis that A. trutta forms a monophyletic clade within the Stromateoids (medusa fish, squaretails and drift fish) and the Scombrids (tuna, mackerel and their allies) suggesting a common ancestor, other data collected during the investigation does not support this hypothesis.</p>

Sign in / Sign up

Export Citation Format

Share Document