Chiton phylogeny (Mollusca : Polyplacophora) and the placement of the enigmatic species Choriplax grayi (H. Adams & Angas)

2013 ◽  
Vol 27 (6) ◽  
pp. 603 ◽  
Author(s):  
Julia D. Sigwart ◽  
Isabella Stoeger ◽  
Thomas Knebelsberger ◽  
Enrico Schwabe
Keyword(s):  
De Novo ◽  
Morphological Evidence ◽  
Molecular Evidence ◽  
Unexpected Result ◽  
Shallow Marine ◽  
Multigene Analysis ◽  
Mitochondrial Markers ◽  
The Family ◽  
Key Aspects ◽  
Correct Association

Shallow marine chitons (Mollusca : Polyplacophora : Chitonida) are widespread and well described from established morphoanatomical characters, yet key aspects of polyplacophoran phylogeny have remained unresolved. Several species, including Hemiarthrum setulosum Carpenter in Dall, 1876, and especially the rare and enigmatic Choriplax grayi (Adams & Angas, 1864), defy systematic placement. Choriplax is known from only a handful of specimens and its morphology is a mosaic of key taxonomic features from two different clades. Here, new molecular evidence provides robust support for its correct association with a third different clade: Choriplax is placed in the superfamily Mopalioidea. Hemiarthrum is included in Cryptoplacoidea, as predicted from morphological evidence. Our multigene analysis of standard nuclear and mitochondrial markers demonstrates that the topology of the order Chitonida is divided into four clades, which have also been recovered in previous studies: Mopalioidea is sister to Cryptoplacoidea, forming a clade Acanthochitonina. The family Callochitonidae is sister to Acanthochitonina. Chitonoidea is resolved as the earliest diverging group within Chitonida. Consideration of this unexpected result for Choriplax and our well-supported phylogeny has revealed differing patterns of shell reduction separating the two superfamilies within Acanthochitonina. As in many molluscs, shell reduction as well as the de novo development of key shell features has occurred using different mechanisms, in multiple lineages of chitons.

scholarly journals Tackling the Taxonomic Challenges in the Family Scoliidae (Insecta, Hymenoptera) Using an Integrative Approach: A Case Study from Southern China

Insects ◽  
2021 ◽  
Vol 12 (10) ◽  
pp. 892
Author(s):  
Zhen Liu ◽  
Sheng-Jie Yang ◽  
Yu-Yuan Wang ◽  
Yan-Qiong Peng ◽  
Hua-Yan Chen ◽  
...  
Keyword(s):  
Cryptic Species ◽  
Southern China ◽  
Molecular Data ◽  
Genetic Distances ◽  
Integrative Approach ◽  
Morphological Evidence ◽  
Molecular Evidence ◽  
The Family ◽  
Coi Sequences ◽  
Taxonomic Approach

Species of the family Scoliidae are larval parasitoids of scarabaeoid beetles and pollinators of various plants. Despite their great importance in pest biological control and plant pollination, the taxonomy and systematics of these parasitoids are far from clear. Some species of the family are extremely morphologically similar and difficult to identify, especially in males. In this study, an integrative taxonomic approach, combining morphology and molecular data, was used to discriminate the species of Scoliidae from southern China. In total, 52 COI sequences belonging to 22 morphospecies of 9 genera in two tribes were obtained. The COI sequences worked well for the identification of all the studied species, with intraspecific genetic distances generally less than 2%, while interspecific distances ranged between 5.3% and 20.8%. The delimitations of the problematic species and subspecies of Scolia and Megacampsomeris are well solved by COI sequences, suggesting that DNA barcoding could be a useful identification tool for Scoliidae. Based on both morphological and molecular evidence, we discovered one undescribed cryptic species of the polytypic species Solia (Discolia) superciliaris Saussure, 1864, five newly recorded species, i.e., Scolia (Discolia) sikkimensis Bingham, 1896, Sericocampsomeris flavomaculata Gupta and Jonathan, 1989, Megacampsomeris asiatica (Saussure, 1858), Megacampsomeris pulchrivestita (Cameron, 1902) and Megacampsomeris shillongensis (Betrem, 1928) and one pending subspecies of Scolia (Discolia) watanabei (Matsumura, 1912) from China. Our study indicates that such an integrative approach, combing both molecular and morphological evidence, is a potent tool to tackle the taxonomic challenges in the family Scoliidae, or even, in other diverse groups of Aculeata, of which sexual dimorphism and cryptic species are common.

scholarly journals Affinities of the family Sollasellidae (Porifera, Demospongiae). I. Morphological evidence

2006 ◽  
Vol 75 (03-04) ◽  
pp. 133-144 ◽  
Author(s):  
R.W.M. van Soest ◽  
J.N.A. Hooper ◽  
E. Beglinger ◽  
D. Erpenbeck
Keyword(s):  
Western Indian Ocean ◽  
Surface Pattern ◽  
Skeletal Structure ◽  
Morphological Evidence ◽  
Molecular Evidence ◽  
The Family ◽  
Special Surface ◽  
Single Genus ◽  
A New Species

Comparison of Sollasella digitataLendenfeld, 1888, up until the present assigned to its own family Sollasellidae Lendenfeld, 1887 in the order Hadromerida, and Raspailopsis cervicornisBurton, 1959, assigned to Raspailiidae Nardo, 1833 in the order Poecilosclerida, leads to the conclusion that both should be considered congeneric and are best assigned to a single genus Sollasella. This conclusion is based on examination of habit and skeletal characters of the type material of S. digitataand both type and freshly collected material of S. cervicornis. The conclusion is strengthened by the discovery of a new species, Sollasella moretonensisn.sp. collected in North Australia (primarily in the northeastern coast, but also an isolated record from the northwestern Australian coast), which possesses in addition to the characteristic surface pattern and skeletal structure, genuine echinating acanthostyles. The redefined genus Sollasellashares axial / extra-axial arrangement of the skeleton, special surface brushes of oxeas surrounding a single protruding style, and vestigial occurrence of acanthostyles with many Raspailias.l. Nevertheless, it is retained as a separate genus, on account of its peculiar polygonal arrangement of surface pores. The distribution of the genus is disjunctive including both (southeast, northeast and northwest) Australian and Western Indian Ocean localities, but so far no intermediate records. Based on this morphological evidence, it is proposed – pending publication of corroborating molecular evidence to be presented in a follow-up study – to reassign Sollasellaand the family Sollasellidae to the poecilosclerid family Raspailiidae.

scholarly journals A molecular phylogeny of Porcellionidae (Isopoda, Oniscidea) reveals inconsistencies with present taxonomy

ZooKeys ◽  
2018 ◽  
Vol 801 ◽  
pp. 163-176 ◽  
Author(s):  
Andreas C. Dimitriou ◽  
Stefano Taiti ◽  
Helmut Schmalfuss ◽  
Spyros Sfenthourakis
Keyword(s):  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Morphological Evidence ◽  
Molecular Evidence ◽  
Geographical Pattern ◽  
The Family ◽  
The Status ◽  
Tree Topologies ◽  
Globally Distributed ◽  
Basal Position

Porcellionidae is one of the richest families of Oniscidea globally distributed but we still lack a comprehensive and robust phylogeny of the taxa that are assigned to it. Employing five genetic markers (two mitochondrial and three nuclear) we inferred phylogenetic relationships among the majority of Porcellionidae genera. Phylogenetic analyses conducted via Maximum Likelihood and Bayesian Inference resulted in similar tree topologies. The mtDNA genes cytochrome oxidase I (COI) and 16s rRNA (16s) were used for clade dating using previously published mutation rates. Our results provide evidence against the monophyly of both Porcellionidae and the largest genus of the family Porcellio. These results are compared to previous published work based on morphological evidence. The genera Leptotrichus and Brevurus are not grouped with the rest of Porcellionidae whereas Agnaridae are grouped with part of Porcellionidae. Armadillidium and Schizidium (Armadillidiidae) occupy a basal position on the phylogenetic tree. Even though the African genera Tura and Uramba (distributed in East Africa) are grouped together there is no general geographical pattern in other sub-clades. Additional taxonomic issues that arise in this work such as the assignment of the recently described genus Levantoniscus, arealso discussed. The status of Porcellionidae should be further revised and morphological characters traditionally used in Oniscidea taxonomy should be reconsidered in view of molecular evidence. The origin of the monophyletic clade within Porcellionidae as indicated in the present work is dated back to the Oligocene (~32 mya).

Conoscyphus belongs to Acrobolbaceae (Jungermanniineae) not Lophocoleaceae (Lophocoleineae)

2018 ◽  
Vol 31 (3) ◽  
pp. 209 ◽  
Author(s):  
Richard J. Dimon ◽  
Jiri Váňa ◽  
Alfons Schäfer-Verwimp ◽  
Jochen Heinrichs ◽  
Matt A. M. Renner
Keyword(s):  
Cell Surface ◽  
Morphological Evidence ◽  
Molecular Evidence ◽  
Leaf Cell ◽  
Oil Bodies ◽  
Reproductive Structures ◽  
The Family ◽  
Surface Ornamentation ◽  
Morphological Differences

Molecular evidence supports the transfer of Conoscyphus Mitt. from Lophocoleaceae to Acrobolbaceae, which is unexpected on the basis of morphological evidence and further disrupts the morphological circumscription of Acrobolbaceae. Conoscyphus differs from other Acrobolbaceae in possessing a stem perigynium and a conspicuous perianth that forms a tube, large underleaves that produce rhizoids in a fascicle from the underleaf disc, and shoots that grow inverted when hanging free from the substrate. However, Conoscyphus shares with other Acrobolbaceae granular brown oil bodies, a multistratose capsule, absence of terminal branching and papillose leaf cell-surface ornamentation. To reflect the morphological differences, particularly in post-fertilisation reproductive structures, between Conoscyphus and other members of the family, we retain subfamily Conoscyphoideae and transfer it to Acrobolbaceae.

The Disruption Of Family In Manju Kapur’s Custody

Think India ◽  
2019 ◽  
Vol 22 (3) ◽  
pp. 880-885
Author(s):  
K.P. Bhavatharini ◽  
Ms Dr. Anita Albert
Keyword(s):  
Marital Relationship ◽  
Modern Life ◽  
The Real ◽  
Law System ◽  
Metropolitan Cities ◽  
Take Back ◽  
The Family ◽  
Female Protagonist ◽  
The Future ◽  
Key Aspects

Manju Kapur exposes the disparity and how modernity plays a major role in our society and also the hollowness modern life through her novel Custody. The present paper deals with the key aspects of custody, like extra marital affair, exploration of children and the law system of India. Manju Kapur has published five novels and all her novels dealt with postmodern era, which became sensational in the literary world. She talks about the life of people in Metropolitan cities and how it changes the attitude of theirs and makes them to be victims of modernity through her novel Custody. She manages to disclose the atmosphere which revolves around the family and how it destroys their peace. Here the author portrays how her female protagonist goes to an extent to fulfill her need even breaking her marital relationship with her husband and lack of concern with her children. She portrays the unimaginable incident of broken marriage and illustrates how it causes their children to yearning for their custody from their parents. The children are mentally affected because of the conflict between their egoistic parents to take back their custody only to win the battle not having the real concern over the future of their children. The author manages to create an excellent atmosphere that reveals the various disasters roaming around the family. The future of the children is also hazard. This novel proves that Manju Kapur is a great curator of the modern Indian family.

A REVISED GENERIC SYNOPSIS OF HYACINTHACEAE IN SUB-SAHARAN AFRICA, BASED ON MOLECULAR EVIDENCE, INCLUDING NEW COMBINATIONS AND THE NEW TRIBE PSEUDOPROSPEREAE

2003 ◽  
Vol 60 (3) ◽  
pp. 533-568 ◽  
Author(s):  
J. C. MANNING ◽  
P. GOLDBLATT ◽  
M. F. FAY
Keyword(s):  
Phylogenetic Analysis ◽  
Sub Saharan Africa ◽  
Molecular Evidence ◽  
New Combinations ◽  
Generic Level ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Single Genus ◽  
New Tribe ◽  
Sub Saharan

A revised generic synopsis of sub-Saharan Hyacinthaceae is presented, based on a molecular phylogenetic analysis of the family. Generic rank is accorded only to reciprocally monophyletic clades that can be distinguished by recognizable morphological discontinuities, thereby permitting an appropriate generic assignment of species not included in the analysis. Three subfamilies are recognized within the region. Subfamily Ornithogaloideae, characterized by flattened or angular seeds with tightly adhering testa, is considered to include the single genus Ornithogalum, which is expanded to include the genera Albuca, Dipcadi, Galtonia, Neopatersonia and Pseudogaltonia. Recognizing any of these segregates at generic level renders the genus Ornithogalum polyphyletic, while subdivision of Ornithogalum into smaller, morphologically distinguishable segregates in order to preserve the monophyly of each is not possible. Subfamily Urgineoideae, characterized by flattened or winged seeds with brittle, loosely adhering testa, comprises the two mainland African genera Bowiea and Drimia. The latter is well circumscribed by its deciduous, short-lived perianth and includes the previously recognized genera Litanthus, Rhadamanthus, Schizobasis and Tenicroa. The monotypic Madagascan Igidia is provisionally included in the subfamily as a third genus on the basis of its seeds, pending molecular confirmation of its relationships. Subfamily Hyacinthoideae resolves into three clades, distinguished as tribes Hyacintheae (strictly northern hemisphere and not treated further), Massonieae and Pseudoprospereae tribus nov. Full descriptions and a key to their identification are provided for all genera. New combinations reflecting the generic circumscriptions adopted here are made for most African and all Indian and Madagascan species.

scholarly journals De Novo SNP Discovery and Genotyping of Iranian Pimpinella Species Using ddRAD Sequencing

Agronomy ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1342
Author(s):  
Shaghayegh Mehravi ◽  
Gholam Ali Ranjbar ◽  
Ghader Mirzaghaderi ◽  
Anita Alice Severn-Ellis ◽  
Armin Scheben ◽  
...  
Keyword(s):  
De Novo ◽  
Genetic Relationships ◽  
Nucleotide Polymorphisms ◽  
High Quality ◽  
Genomic Resources ◽  
High Quality Snps ◽  
The Family ◽  
Double Digestion ◽  
Flanking Sequences ◽  
Downstream Analysis

The species of Pimpinella, one of the largest genera of the family Apiaceae, are traditionally cultivated for medicinal purposes. In this study, high-throughput double digest restriction-site associated DNA sequencing technology (ddRAD-seq) was used to identify single nucleotide polymorphisms (SNPs) in eight Pimpinella species from Iran. After double-digestion with the enzymes HpyCH4IV and HinfI, a total of 334,702,966 paired-end reads were de novo assembled into 1,270,791 loci with an average of 28.8 reads per locus. After stringent filtering, 2440 high-quality SNPs were identified for downstream analysis. Analysis of genetic relationships and population structure, based on these retained SNPs, indicated the presence of three major groups. Gene ontology and pathway analysis were determined by using comparison SNP-associated flanking sequences with a public non-redundant database. Due to the lack of genomic resources in this genus, our present study is the first report to provide high-quality SNPs in Pimpinella based on a de novo analysis pipeline using ddRAD-seq. This data will enhance the molecular knowledge of the genus Pimpinella and will provide an important source of information for breeders and the research community to enhance breeding programs and support the management of Pimpinella genomic resources.

scholarly journals Sixty Years with the Chrysobalanaceae

2020 ◽  
Author(s):  
Ghillean T. Prance
Keyword(s):  
Economic Botany ◽  
Field Studies ◽  
Molecular Evidence ◽  
New Techniques ◽  
Conservation Ecology ◽  
The Past ◽  
New Findings ◽  
The Family ◽  
Molecular Studies ◽  
Economic Use

AbstractA review is given of the studies of Ghillean Prance and associates on the Chrysobalanaceae over the past sixty years. This has focussed on defining the generic boundaries in the family and on monographic work with a worldwide approach to this pantropical family. The importance of field studies for work on monographs and Floras is emphasized. Monographs are still the basis for much work on conservation, ecology and economic botany and are needed as a foundation for molecular studies. The importance of being open to experimenting with new techniques and as a result being willing to change the taxonomy in accordance with new findings is demonstrated and emphasized. The twelve genera of the Chrysobalanaceae at the beginning of this career-long study have now increased to twenty-eight in order to present a much better monophyletic and evolutionary arrangement based on recent molecular evidence. In particular it was necessary to divide and rearrange the originally large genera Parinari and Licania into a number of smaller segregate genera. All known species were included in a worldwide monograph published in 2003. A brief review of the economic use for the family is given.

scholarly journals Transcriptomic and Proteomic Analyses Reveal the Diversity of Venom Components from the Vaejovid Scorpion Serradigitus gertschi

Toxins ◽  
2018 ◽  
Vol 10 (9) ◽  
pp. 359 ◽  
Author(s):  
Maria Romero-Gutiérrez ◽  
Carlos Santibáñez-López ◽  
Juana Jiménez-Vargas ◽  
Cesar Batista ◽  
Ernesto Ortiz ◽  
...  
Keyword(s):  
Serine Proteases ◽  
De Novo ◽  
Sequence Similarity ◽  
Scorpion Venom ◽  
Secretory Proteins ◽  
Host Defense Peptides ◽  
The Family ◽  
Pathogenesis Related ◽  
Molecular Masses

To understand the diversity of scorpion venom, RNA from venomous glands from a sawfinger scorpion, Serradigitus gertschi, of the family Vaejovidae, was extracted and used for transcriptomic analysis. A total of 84,835 transcripts were assembled after Illumina sequencing. From those, 119 transcripts were annotated and found to putatively code for peptides or proteins that share sequence similarities with the previously reported venom components of other species. In accordance with sequence similarity, the transcripts were classified as potentially coding for 37 ion channel toxins; 17 host defense peptides; 28 enzymes, including phospholipases, hyaluronidases, metalloproteases, and serine proteases; nine protease inhibitor-like peptides; 10 peptides of the cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 protein superfamily; seven La1-like peptides; and 11 sequences classified as “other venom components”. A mass fingerprint performed by mass spectrometry identified 204 components with molecular masses varying from 444.26 Da to 12,432.80 Da, plus several higher molecular weight proteins whose precise masses were not determined. The LC-MS/MS analysis of a tryptic digestion of the soluble venom resulted in the de novo determination of 16,840 peptide sequences, 24 of which matched sequences predicted from the translated transcriptome. The database presented here increases our general knowledge of the biodiversity of venom components from neglected non-buthid scorpions.

scholarly journals Multigene phylogeny and morphology reveal Phaeobotryon rhois sp. nov. (Botryosphaeriales, Ascomycota)

Phytotaxa ◽  
2015 ◽  
Vol 205 (2) ◽  
pp. 90 ◽  
Author(s):  
XIN-LEI FAN ◽  
KEVIN D. HYDE ◽  
JIAN-KUI LIU ◽  
YING-MEI LIANG ◽  
CHENG-MING TIAN
Keyword(s):  
New Species ◽  
Distinct Species ◽  
Similar Species ◽  
Multigene Phylogeny ◽  
Fruiting Bodies ◽  
Canker Disease ◽  
Multigene Analysis ◽  
The Family ◽  
Rhus Typhina ◽  
A New Species

The family Botryosphaeriaceae encompasses important plant-associated pathogens, endophytes and saprobes with a wide geographical and host distribution. Two dark-spored botryosphaeriaceous taxa associated with Rhus typhina dieback and canker disease were collected from Ningxia Province, in northwestern China. Morphology and multigene analysis (ITS, LSU and EF-1α) clearly distinguished this clade as a distinct species in the genus. Phaeobotryon rhois is introduced and illustrated as a new species in this paper. The species is characterized by its globose, unilocular fruiting bodies and small, brown, 1-septate conidia. It can be distinguished from the similar species P. cercidis, P. cupressi, P. mamane and P. quercicola based on host association and conidial size and colour.

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