Systematics of the Gondwanan pseudoscorpion family Hyidae (Pseudoscorpiones:Neobisioidea): new data and a revised phylogenetic hypothesis

2007 ◽  
Vol 21 (4) ◽  
pp. 365 ◽  
Author(s):  
Mark S. Harvey ◽  
Erich S. Volschenk
Keyword(s):  
Phylogenetic Analysis ◽  
Type Species ◽  
Short Range ◽  
Phylogenetic Position ◽  
Central Position ◽  
Phylogenetic Hypothesis ◽  
Biogeographic Patterns ◽  
The Family ◽  
Tree Topologies ◽  
The Indian Ocean

The neobisioid pseudoscorpion family Hyidae has a distribution spanning the margins of the Indian Ocean and its phylogenetic position has been suggested to lie midway between a clade containing the Bochidae and Ideoroncidae, and a clade containing the remaining neobisioid families, Gymnobisiidae, Neobisiidae, Parahyidae and Syarinidae. Their central position within the Neobisioidea, and their biogeographic patterns, have prompted the present study, which is designed to test the monophyly of the family, deduce the phylogeny of all known hyids and to describe several newly discovered species. The phylogenetic analysis of the 14 species of the pseudoscorpion family Hyidae along with 20 other species of Neobisioidea demonstrates the monophyly of the family and its distinctness from all other neobisioid families. Two genera, Hya Chamberlin and Indohya Beier, are recognised, even though the phylogenetic analysis did not consistently recover the monophyly of Indohya. The effect of outgroup selection was tested on the Hyidae and revealed markedly different tree topologies. Hyella Harvey, with the type species H. humphreysi Harvey, is newly synonymised with Indohya owing to similarities between the previously described species and some new troglobitic species. The Indohyinae Harvey is synonymised with Hyidae. Two new epigean species and three new troglobitic species of Indohya are described: I. damocles, sp. nov., I. gollum, sp. nov., I. haroldi, sp. nov. and I. napierensis, sp. nov. from northern Western Australia, and I. jacquelinae, sp. nov. from Madagascar. All species of Indohya are short-range endemics, having very small distributional ranges. New data are presented for Indohya humphreysi (Harvey), including the first description of the male. The first protonymphs of the family Hyidae are described, including those of Hya minuta (Tullgren) and Indohya gollum, sp. nov.

Albumin Immunological Relationships of Australian Marsupials. 2. The Pseudocheiridae

1990 ◽  
Vol 38 (5) ◽  
pp. 519 ◽  
Author(s):  
PR Baverstock ◽  
M Krieg ◽  
J Birrell ◽  
GM Mckay
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Phylogenetic Position ◽  
The Family ◽  
Microcomplement Fixation

Microcomplement fixation of albumin was used to examine the phylogenetic relationships among the ringtail possums, family Pseudocheiridae. Phylogenetic analysis of the data supports the hypothesis of at least three distinct clades within the family: one containing Petauroides and Hemibelideus; a second consisting of Pseudocheirus herbertensis, Ps. forbesi, Ps. mayeri, and Ps. canescens; and a third containing Ps. archeri, Ps. corinnae, Ps. cupreus and Ps. dahli. The data have not resolved the phylogenetic position of Ps. peregrinus, which may either form a separate clade or lie close to the Ps. archeri clade.

Phylogeny and taxonomy of the Rhinorhynchinae (Coleoptera:Nemonychidae)

2010 ◽  
Vol 24 (6) ◽  
pp. 573 ◽  
Author(s):  
Guillermo Kuschel ◽  
Richard A. B. Leschen
Keyword(s):  
Phylogenetic Analysis ◽  
Type Species ◽  
New Caledonia ◽  
Molecular Data ◽  
Host Use ◽  
New Genera ◽  
Plant Associations ◽  
The Family ◽  
Fossil Genus ◽  
Subjective Synonym

An overview of the taxa of Rhinorhynchinae (Nemonychidae) is presented. A phylogenetic analysis of the 19 extant genera of the Rhinorhynchinae and one fossil genus from the Lower Cretaceous (Cratomacer Zherikhin & Gratshev), based on 29 characters of adults, larvae and host plant associations, shows three monophyletic groups, treated as tribes (Rhinorhynchini, Mecomacerini and Rhynchitomacerini). Primitive associations are unknown for Rhinorhynchinae and early host use diversification included associations with Ranunculaceae (Nemonyx Redtenbacher), Pinaceae (Cimberis Gozis), Nothofagaceae (Rhynchitomacerini) and Podocarpaceae (Rhinorhynchini). While Mecomacerini diversified on Araucariaceae, within Rhinorhynchini there was a single reversal to Araucariaceae and a shift in Atopomacer Kuschel to Pinaceae. Placement of Cratomacer into Mecomacerini is consistent with geological and molecular data that suggest gymnosperms may have been the primitive hosts for the family. Three new genera are described in Rhinorhynchinae: Araucomacer, gen. nov. (type species A. hirticeps Kuschel) from Chile, Idiomacer, gen. nov. (type species I. basicornis, sp. nov.) from New Caledonia, and Zimmiellus, gen. nov. (type species Z. fronto, sp. nov.) from Queensland, Australia, while Stenomacer Kuschel, stat. nov. from Chile is reinstated from synonymy. Seven species are described as new: Atopomacer grandifurca, sp. nov. from Costa Rica and Panama, A. obrieni, sp. nov. from Mexico, A. panamensis, sp. nov. from Panama, A. pini, sp. nov. from Mexico, A. podocarpi, sp. nov. from Venezuela, Basiliogeus dracrycarpi, sp. nov. from western New Guinea and B. inops, sp. nov. from Queensland. Rhynchitomacer rufus Kuschel is a new junior subjective synonym of R. nigritus Kuschel, syn. nov., R. viridulus Kuschel is a new junior subjective synonym of R. flavus Voss, syn. nov. and Stenomacer fuscus Kuschel is a new junior subjective synonym of S. vernus Kuschel, syn. nov. Keys to genera of Rhinorhynchinae and to species of Atopomacer, Rhynchitomacer and Stenomacer are included. Diagnoses of the three extant subfamilies of Nemonychidae are included.

Phylogenetic relationships of the subfamily Pyrgulinae (Gastropoda: Caenogastropoda: Hydrobiidae) with emphasis on the genus Dianella Gude, 1913

Zootaxa ◽  
2005 ◽  
Vol 891 (1) ◽  
pp. 1 ◽  
Author(s):  
Magdalena Szarowska ◽  
Andrzej Falniowski ◽  
FRANK Riedel ◽  
Thomas Wilke
Keyword(s):  
Type Species ◽  
Sister Group ◽  
Molecular Data ◽  
Character Evolution ◽  
Phylogenetic Position ◽  
Sister Group Relationship ◽  
Data Sets ◽  
Sequencing Data ◽  
The Family ◽  
Anatomical Characters

The phylogenetic position of the subfamily Pyrgulinae within the superfamily Rissooidea has been discussed very controversially. Different data sets not only led to different evolutionary scenarios but also to different systematic classifications of the taxon. The present study uses detailed anatomical data for two pyrgulinid taxa, the type species of the subfamily, Pyrgula annulata (Linnaeus, 1767), and the type species of the little known genus Dianella, D. thiesseana (Kobelt, 1878), as well as DNA sequencing data of three gene fragments from representatives of eight rissooidean families to A) infer the phylogenetic position of Pyrgulinae with emphasis on its relationships within the family Hydrobiidae, B) to study the degree of concordance between anatomyand DNAbased phylogenies and C) to trace the evolution of anatomical characters along a multi-gene molecular phylogeny to find the anatomical characters that might be informative for future cladistic analyses. Both anatomical and molecular data sets indicate either a very close or even sister-group relationship of Pyrgulinae and Hydrobiinae. However, there are major conflicts between the two data sets on and above the family level. Notably, Hydrobiidae is not monophyletic in the anatomical analysis. The reconstruction of anatomical character evolution indicates that many of the characters on which the European hydrobioid taxonomy is primarily based upon are problematic. The inability to clearly separate some hydrobiids from other distinct families based on those characters might explain why until only a few years ago, "Hydrobiidae" was a collecting box for numerous rissooidean taxa (mostly species with shells small and lacking any characteristic features). The present study not only stresses the need for comprehensive molecular studies of rissooidean taxa, it also demonstrates that much of the problems surrounding anatomical analyses in rissooidean taxa are due to the lack of comprehensive data for many representatives. In order to aid future comparativeanatomical studies and a better understanding of character evolution in the species-rich family Hydrobiidae, detailed anatomical descriptions for P. annulata and D. thiesseana are provided.Key words: Pyrgulinae, Pyrgula, Dianella, Hydrobiidae, phylogeny, DNA, anatomy, Greece

Phylogeny of dracunculoid nematodes (Chromadorea: Rhabditida: Spirurina: Dracunculoidea) from some Eurasian freshwater fishes

Zootaxa ◽  
2020 ◽  
Vol 4858 (4) ◽  
pp. 521-541
Author(s):  
SERGEY G. SOKOLOV ◽  
ALEXANDER P. KALMYKOV ◽  
SVETLANA V. MALYSHEVA
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationship ◽  
Ribosomal Dna ◽  
Phylogenetic Relationships ◽  
Type Species ◽  
Freshwater Fishes ◽  
Ssu Rdna ◽  
Lsu Rdna ◽  
Rdna Sequences ◽  
The Family

Sets of small ribosomal DNA (SSU rDNA) and large ribosomal DNA (LSU rDNA) sequences were obtained for Philometroides moraveci Vismanis & Yunchis, 1994, Philometra kotlani (Molnár, 1969), Philometra rischta Skrjabin, 1923, Philometra cf. obturans (Prenant, 1886) (Philometridae), Sinoichthyonema amuri (Garkavi, 1972), Agrachanus scardinii (Molnár, 1966), Kalmanmolnaria intestinalis (Dogiel & Bychowsky, 1934) and Skrjabillanus tincae Shigin & Shigina, 1958 (Skrjabillanidae). Phylogenetic analysis of SSU rDNA data shows that dracunculoid nematodes are divided into two well-supported clades designated as Clade I and Clade II, respectively. Clade I includes the type species of the genus Philonema Kuitunen-Ekbaum, 1933, some species from the family Daniconematidae Moravec & Køie, 1987 and two subfamilies of skrjabillanids, Skrjabillaninae Shigin & Shigina, 1958 and Esocineminae Moravec, 2006. Clade II unites species from the families Dracunculidae Stiles, 1907, Micropleuridae Baylis & Daubney, 1926 and Philometridae Baylis & Daubney, 1926. Within the Philometridae, there are several well-supported groups of species, one of which unites freshwater Philometra spp. from the Palearctic cyprinids, identified as P. kotlani, P rischta, P. ovata (Zeder, 1803) and P. cyprinirutili (Creplin, 1825). However, the phylogenetic relationships of most philometrids are unresolved. An analysis of partial SSU and LSU rDNA sequences indicates that there is no direct phylogenetic relationship between Agrachanus Tikhomirova, 1971 (type species Skrjabillanus scardinii Molnár, 1966) and Skrjabillanus Shigin & Shigina, 1958 (type species Sk. tincae), which means that the genus Agrachanus can be resurrected. Our study confirms that Philonematinae Ivashkin, Sobolev & Khromova, 1971 should be elevated to the family rank. We formally establish the family Philonematidae Ivashkin, Sobolev & Khromova, 1971 stat. nov. We also suggest combining the superfamilies Dracunculoidea Stiles, 1907 and Camallanoidea Railliet & Henry, 1915 into the infraorder Camallanomorpha Roberts, Janovy & Nadler, 2013. 

scholarly journals Phylogeny of the family Characidae (Teleostei: Characiformes): from characters to taxonomy

2010 ◽  
Vol 8 (3) ◽  
pp. 385-568 ◽  
Author(s):  
Juan Marcos Mirande
Keyword(s):  
Phylogenetic Analysis ◽  
Morphological Characters ◽  
Phylogenetic Hypothesis ◽  
Phylogenetic Information ◽  
Neotropical Fishes ◽  
Incertae Sedis ◽  
The Family ◽  
Taxonomic Implications

The family Characidae is the most diverse among Neotropical fishes. Systematics of this family are mainly based on pre-cladistic papers, and only recently a phylogenetic hypothesis for Characidae was proposed by the author. That phylogeny was based on 360 morphological characters studied for 160 species, including representatives of families related to Characidae. This paper is based on that phylogenetic analysis, with the analyzed characters described herein and documented, accompanied by comparisons of their definition and coding in previous papers. Synapomorphies of each node of the proposed phylogeny are listed, comparisons with previous classifications provided, and autapomorphies of the analyzed species listed. Taxonomic implications of the proposed classification and the position of the incertae sedis genera within Characidae are discussed. A discussion of the phylogenetic information of the characters used in the classical systematics of the Characidae is provided.

scholarly journals Neotypification and phylogeny of Kalmusia 

Phytotaxa ◽  
2014 ◽  
Vol 176 (1) ◽  
pp. 164 ◽  
Author(s):  
Ying Zhang ◽  
Jiaqi Zhang ◽  
ZHAODI WANG ◽  
Jacques Fournier ◽  
Pedro W. Crous ◽  
...  
Keyword(s):  
Molecular Phylogeny ◽  
Type Species ◽  
Type A ◽  
Populus Tremula ◽  
Type Material ◽  
Phylogenetic Position ◽  
The Family

Kalmusia ebuli, the type species of Kalmusia, lacks type material and therefore its phylogenetic position remains unresolved. As a consequence the familial position of Kalmusia is based on morphology and molecular phylogeny of species other than the type. A fresh collection of K. ebuli, recently obtained from decorticated wood of Populus tremula in the foothills of the French Pyrenees is, therefore, designated as neotype to stabilize the application of the species and/or genus name. The holotype of K. ebuli f. sarothamni represents a synonym of K. ebuli. The genus Kalmusia is shown to be polyphyletic within the family Montagnulaceae, with K. ebuli being distant from K. brevispora and K. scabrispora, which appear to represent a different genus.

scholarly journals Restructuring the Ancorabolidae Sars (Copepoda, Harpacticoida) and Cletodidae T. Scott, with a new phylogenetic hypothesis regarding the relationships of the Laophontoidea T. Scott, Ancorabolidae and Cletodidae

2020 ◽  
Vol 96 (2) ◽  
pp. 455-498
Author(s):  
Kai Horst George
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Morphological Characteristics ◽  
Sister Group ◽  
Morphological Characters ◽  
Sister Group Relationship ◽  
Phylogenetic Hypothesis ◽  
The Family ◽  
Swimming Leg

Uncovering the systematics of CopepodaHarpacticoida, the second-most abundant component of the meiobenthos after Nematoda, is of major importance for any further research dedicated especially to ecological and biogeographical approaches. Based on the evolution of the podogennontan first swimming leg, a new phylogenetic concept of the Ancorabolidae Sars and Cletodidae T. Scott sensu Por (Copepoda, Harpacticoida) is presented, using morphological characteristics. It confirms the polyphyletic status of the Ancorabolidae and its subfamily Ancorabolinae Sars and the paraphyletic status of the subfamily Laophontodinae Lang. Moreover, it clarifies the phylogenetic relationships of the so far assigned members of the family. An exhaustive phylogenetic analysis was undertaken using 150 morphological characters, resulting in the establishment of a now well-justified monophylum Ancorabolidae. In that context, the Ancorabolus-lineage sensu Conroy-Dalton and Huys is elevated to sub-family rank. Furthermore, the membership of Ancorabolina George in a rearranged monophylum Laophontodinae is confirmed. Conversely, the Ceratonotus-group sensu Conroy-Dalton is transferred from the hitherto Ancorabolinae to the Cletodidae. Within these, the Ceratonotus-group and its hypothesised sister-group Cletodes Brady are combined to form a monophyletic subfamily Cletodinae T. Scott, subfam. nov. Consequently, it was necessary to restructure the Ancorabolidae, Ancorabolinae and Laophontodinae and extend the Cletodidae to include the displacement and exclusion of certain taxa. Moreover, comparison of the Ancorabolidae, Cletodidae, Laophontoidea and other Podogennonta shows that the Ancorabolidae and Cletodidae form sister-groups in a monophylum Cletodoidea Bowman and Abele, which similarly has a sister-group-relationship with the Laophontoidea T. Scott. According to the present study, both taxa constitute a derived monophylum within the Podogennonta Lang.

scholarly journals Lichenicola cladoniae gen. nov., sp. nov., a member of the family Acetobacteraceae isolated from an Antarctic lichen

2020 ◽  
Vol 70 (11) ◽  
pp. 5918-5925 ◽  
Author(s):  
Hyun-Ju Noh ◽  
Seung Chul Shin ◽  
Yerin Park ◽  
Ahyoung Choi ◽  
Kiwoon Baek ◽  
...  
Keyword(s):  
Type Species ◽  
Genomic Analysis ◽  
Phylogenetic Position ◽  
Rrna Gene ◽  
Bacterial Strains ◽  
Respiratory Quinone ◽  
Content Type ◽  
Link Type ◽  
The Family ◽  
Nitrate And Nitrite

Two Gram-stain-negative, facultative anaerobic, chemoheterotrophic, pink-coloured, rod-shaped and non-motile bacterial strains, PAMC 26568 and PAMC 26569T, were isolated from an Antarctic lichen. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strains PAMC 26568 and PAMC 26569T belong to the family Acetobacteraceae and the most closely related species are Gluconacetobacter takamatsuzukensis (96.1 %), Gluconacetobacter tumulisoli (95.9 %) and Gluconacetobacter sacchari (95.7 %). Phylogenomic and genomic relatedness analyses showed that strains PAMC 26568 and PAMC 26569T are clearly distinguished from other genera in the family Acetobacteraceae by average nucleotide identity values (<72.8 %) and the genome-to-genome distance values (<22.5 %). Genomic analysis revealed that strains PAMC 26568 and PAMC 26569T do not contain genes involved in atmospheric nitrogen fixation and utilization of sole carbon compounds such as methane and methanol. Instead, strains PAMC 26568 and PAMC 26569T possess genes to utilize nitrate and nitrite and certain monosaccharides and disaccharides. The major fatty acids (>10 %) are summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c; 40.3–40.4 %), C18 : 1 2OH (22.7–23.7 %) and summed feature 2 (C14 : 0 3OH and/or C16 : 1 iso I; 12.0 % in PAMC 26568). The major respiratory quinone is Q-10. The genomic DNA G+C content of PAMC 26568 and PAMC 26569T is 64.6 %. Their distinct phylogenetic position and some physiological characteristics distinguish strains PAMC 26568 and PAMC 26569T from other genera in the family Acetobacteraceae supporting the proposal of Lichenicola gen. nov., with the type species Lichenicola cladoniae sp. nov. (type strain, PAMC 26569T=KCCM 43315T=JCM 33604T).

scholarly journals Salifodinibacter halophilus gen. nov., sp. nov., a halophilic gammaproteobacterium in the family Salinisphaeraceae isolated from a salt mine in the Colombian Andes

2020 ◽  
Vol 70 (11) ◽  
pp. 5888-5898 ◽  
Author(s):  
María Paula Parada-Pinilla ◽  
Carolina Díaz-Cárdenas ◽  
Gina López ◽  
Jorge Iván Díaz-Riaño ◽  
Laura N. Gonzalez ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
16S Rrna ◽  
16S Rrna Gene ◽  
Type Species ◽  
Rrna Gene ◽  
Salt Mine ◽  
Content Type ◽  
Link Type ◽  
Colombian Andes ◽  
The Family

Two morphologically similar halophilic strains, named USBA 874 and USBA 960T, were isolated from water and sediment samples collected from the Zipaquirá salt mine in the Colombian Andes. Both isolates had non-spore-forming, Gram-stain-negative and motile cells that grew aerobically. The strains grew optimally at 30 °C, pH 7.0 and with 25 % NaCl (w/v). The isolates showed almost identical 16S rRNA gene sequences (99.0 % similarity). The predominant quinones of USBA-960T were Q-8, Q-7 and Q-9. The major cellular fatty acids were C19 : 0 cyclo ω8c, C18 : 0 and C16 : 0. According to 16S rRNA gene sequencing, the closest phylogenetic relatives are Salinisphaera species (similarity between 93.6 and 92.3 %), Abyssibacter profundi OUC007T (88.6 %) and Oceanococcus atlanticus 22II-S10r2T (88.7 %). In addition, the result of genome blast distance phylogeny analysis between strains USBA 874 and USBA 960T, Salinisphaera halophila (YIM 95161T), Salinisphaera shabanensis (E1L3AT), Salinisphaera orenii (MK-B5T) and Salinisphaera japonica (YTM-1T) was 18.5 %. Other in silico species delineation analyses also showed low identity such as ANIb and ANIm values (<69.0 and <84.0 % respectively), TETRA (<0.81) and AAI values (<0.67). Genome sequencing of USBA 960T revealed a genome size of 2.47 Mbp and a G+C content of 59.71 mol%. Phylogenetic analysis of strains USBA 874 and USBA 960T indicated that they formed a different lineage within the family Salinisphaeraceae . Based on phenotypic and chemotaxonomic characteristics, phylogenetic analysis and DNA–DNA relatedness values, along with identity at whole genome level, it can be concluded that strains USBA 960T and USBA 874 represent a novel genus of the family Salinisphaeraceae and the name Salifodinibacter halophilus gen. nov., sp. nov. is proposed. The type strain is USBA 960T (CMPUJ U095T=CECT 30006T).

scholarly journals CHARACTER ASSESSMENT, GENUS LEVEL BOUNDARIES, AND PHYLOGENETIC ANALYSES OF THE FAMILY RHACOPHORIDAE:

2000 ◽  
pp. 1-31 ◽  
Author(s):  
Jeffery A. Wilkinson ◽  
Robert C. Drewes
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Current Status ◽  
Phylogenetic Hypothesis ◽  
Genus Level ◽  
The Family ◽  
Character Assessment

The first comprehensive phylogenetic analysis of the family Rhacophoridae was conducted by Liem (1970) scoring 81 species for 36 morphological characters. Channing (1989), in a reanalysis of Liem’s study, produced a phylogenetic hypothesis different from that of Liem. We compared the two studies and produced a third phylogenetic hypothesis based on the same characters. We also present the synapomorphic characters from Liem that define the major clades and each genus within the family. Finally, we summarize intergeneric relationships within the family as hypothesized by other studies, and the family’s current status as it relates to other ranoid families.

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