Genotype multiply environment interactions in progeny from a barley cross. 1. Patterns of response among progeny lines for grain yield and time to anthesis

1993 ◽  
Vol 33 (5) ◽  
pp. 619 ◽  
Author(s):  
PA Jackson ◽  
DE Byth ◽  
RP Johnston ◽  
KS Fischer
Keyword(s):  
Principal Component Analysis ◽  
Cluster Analysis ◽  
Grain Yield ◽  
Variance Component ◽  
Dry Matter ◽  
Principal Component ◽  
Component Analysis ◽  
Ge Interaction ◽  
Main Effects ◽  
The Relationship

Barley progeny lines (201) derived from F2 plants of the cross cv. Triumph x cv. Grimmett were evaluated at 7 environments in Queensland. Cluster analysis and principal component analysis were used to examine the variation in response for grain yield. The relationship between days to anthesis and these responses was investigated. The variance component for genotype x environment (GE) interaction for grain yield was of similar magnitude to that for line main effects. Groups of lines formed using cluster analysis exhibited substantial differences in ranking across environments, indicating that selection would be affected by choice of test environments. The components of grain yield, harvest index (HI), and total dry matter (TDM) had large variation for GE interaction. However, for days to anthesis, the variance component for GE interaction was small compared with that for the line main effects. There were significant differences in mean days to anthesis for groups of lines that were classified on the basis of grain yield. Early flowering was associated with high grain yield in some environments but with low grain yield in the 2 irrigated environments. The first component from principal component analysis of grain yield was only weakly related to days to anthesis. This component appeared to be related to performance in favourable environments, suggesting that an important source of variation in grain yield among the progeny lines was associated with their responsiveness to favourable conditions.

Classification of Observations through Combination of the Dimension Reduction and the Cluster Analysis

2017 ◽  
Vol 7 (8) ◽  
pp. 30
Author(s):  
Hyeuk Kim
Keyword(s):  
Machine Learning ◽  
Principal Component Analysis ◽  
Cluster Analysis ◽  
Unsupervised Learning ◽  
Principal Component ◽  
Component Analysis ◽  
Baseball Players ◽  
Partitioning Around Medoids ◽  
Different Characteristics

Unsupervised learning in machine learning divides data into several groups. The observations in the same group have similar characteristics and the observations in the different groups have the different characteristics. In the paper, we classify data by partitioning around medoids which have some advantages over the k-means clustering. We apply it to baseball players in Korea Baseball League. We also apply the principal component analysis to data and draw the graph using two components for axis. We interpret the meaning of the clustering graphically through the procedure. The combination of the partitioning around medoids and the principal component analysis can be used to any other data and the approach makes us to figure out the characteristics easily.

scholarly journals Quantify Coal Macrolithotypes of a Whole Coal Seam: A Method Combing Multiple Geophysical Logging and Principal Component Analysis

Energies ◽  
2021 ◽  
Vol 14 (1) ◽  
pp. 213
Author(s):  
Chao Cui ◽  
Suoliang Chang ◽  
Yanbin Yao ◽  
Lutong Cao
Keyword(s):  
Principal Component Analysis ◽  
Coal Seam ◽  
Coalbed Methane ◽  
Principal Component ◽  
Component Analysis ◽  
Gas Production ◽  
Index Model ◽  
Geophysical Logging ◽  
The Relationship ◽  
Observation Results

Coal macrolithotypes control the reservoir heterogeneity, which plays a significant role in the exploration and development of coalbed methane. Traditional methods for coal macrolithotype evaluation often rely on core observation, but these techniques are non-economical and insufficient. The geophysical logging data are easily available for coalbed methane exploration; thus, it is necessary to find a relationship between core observation results and wireline logging data, and then to provide a new method to quantify coal macrolithotypes of a whole coal seam. In this study, we propose a L-Index model by combing the multiple geophysical logging data with principal component analysis, and we use the L-Index model to quantitatively evaluate the vertical and regional distributions of the macrolithotypes of No. 3 coal seam in Zhengzhuang field, southern Qinshui basin. Moreover, we also proposed a S-Index model to quantitatively evaluate the general brightness of a whole coal seam: the increase of the S-Index from 1 to 3.7, indicates decreasing brightness, i.e., from bright coal to dull coal. Finally, we discussed the relationship between S-Index and the hydro-fracturing effect. It was found that the coal seam with low S-Index values can easily form long extending fractures during hydraulic fracturing. Therefore, the lower S-Index values indicate much more favorable gas production potential in the Zhengzhuang field. This study provides a new methodology to evaluate coal macrolithotypes by using geophysical logging data.

Genetic Diversity Assessment in Dolichos Bean (Lablab purpureus L.) Based on Principal Component Analysis and Single Linkage Cluster Analysis

2021 ◽  
Author(s):  
S.R. Singh ◽  
S. Rajan ◽  
Dinesh Kumar ◽  
V.K. Soni
Keyword(s):  
Genetic Diversity ◽  
Principal Component Analysis ◽  
Cluster Analysis ◽  
Principal Component ◽  
Component Analysis ◽  
Single Linkage ◽  
Pod Yield ◽  
Diversity Assessment ◽  
Single Linkage Cluster ◽  
Linkage Cluster

Background: Dolichos bean occupies a unique position among the legume vegetables of Indian origin for its high nutritive value and wider climatic adaptability. Despite its wide genetic diversity, no much effort has been undertaken towards genetic improvement of this vegetable crop. Knowledge on genetic variability is an essential pre-requisite as hybrid between two diverse parental lines generates broad spectrum of variability in segregating population. The current study aims to assess the genetic diversity in dolichos genotypes to make an effective selection for yield improvement.Methods: Twenty genotypes collected from different regions were evaluated during year 2016-17 and 2017-18. Data on twelve quantitative traits was analysed using principal component analysis and single linkage cluster analysis for estimation of genetic diversity.Result: Principal component analysis revealed that first five principal components possessed Eigen value greater than 1, cumulatively contributed greater than 82.53% of total variability. The characters positively contributing towards PC-I to PC-V may be considered for dolichos improvement programme as they are major traits involved in genetic variation of pod yield. All genotypes were grouped into three clusters showing non parallelism between geographic and genetic diversity. Cluster-I was best for earliness and number of cluster/plant. Cluster-II for vine length, per cent fruit set, pod length, pod width, pod weight and number of seed /pod, cluster III for number of pods/cluster and pod yield /plant. Selection of parent genotypes from divergent cluster and component having more than one positive trait of interest for hybridization is likely to give better progenies for development of high yielding varieties in Dolichos bean.

scholarly journals Magnetic susceptibility to identify landscape segments on a detailed scale in the region of Jaboticabal, São Paulo, Brazil

2012 ◽  
Vol 36 (4) ◽  
pp. 1073-1082 ◽  
Author(s):  
Mariana dos Reis Barrios ◽  
José Marques Junior ◽  
Alan Rodrigo Panosso ◽  
Diego Silva Siqueira ◽  
Newton La Scala Junior
Keyword(s):  
Principal Component Analysis ◽  
Cluster Analysis ◽  
Magnetic Susceptibility ◽  
Clay Fraction ◽  
Chemical Properties ◽  
Principal Component ◽  
Component Analysis ◽  
Sao Paulo ◽  
São Paulo ◽  
Agricultural Potential

The agricultural potential is generally assessed and managed based on a one-dimensional vision of the soil profile, however, the increased appreciation of sustainable production has stimulated studies on faster and more accurate evaluation techniques and methods of the agricultural potential on detailed scales. The objective of this study was to investigate the possibility of using soil magnetic susceptibility for the identification of landscape segments on a detailed scale in the region of Jaboticabal, São Paulo State. The studied area has two slope curvatures: linear and concave, subdivided into three landscape segments: upper slope (US, concave), middle slope (MS, linear) and lower slope (LS, linear). In each of these segments, 20 points were randomly sampled from a database with 207 samples forming a regular grid installed in each landscape segment. The soil physical and chemical properties, CO2 emissions (FCO2) and magnetic susceptibility (MS) of the samples were evaluated represented by: magnetic susceptibility of air-dried fine earth (MS ADFE), magnetic susceptibility of the total sand fraction (MS TS) and magnetic susceptibility of the clay fraction (MS Cl) in the 0.00 - 0.15 m layer. The principal component analysis showed that MS is an important property that can be used to identify landscape segments, because the correlation of this property within the first principal component was high. The hierarchical cluster analysis method identified two groups based on the variables selected by principal component analysis; of the six selected variables, three were related to magnetic susceptibility. The landscape segments were differentiated similarly by the principal component analysis and by the cluster analysis using only the properties with higher discriminatory power. The cluster analysis of MS ADFE, MS TS and MS Cl allowed the formation of three groups that agree with the segment division established in the field. The grouping by cluster analysis indicated MS as a tool that could facilitate the identification of landscape segments and enable the mapping of more homogeneous areas at similar locations.

scholarly journals Air Pollution and Human Development in Europe: A New Index Using Principal Component Analysis

2018 ◽  
Vol 10 (2) ◽  
pp. 312 ◽  
Author(s):  
Ana-Maria Săndică ◽  
Monica Dudian ◽  
Aurelia Ştefănescu
Keyword(s):  
Principal Component Analysis ◽  
Human Development ◽  
Quantitative Measure ◽  
Principal Component ◽  
Component Analysis ◽  
Life Expectancy At Birth ◽  
Real Gdp ◽  
Development Indicator ◽  
The Relationship ◽  
Pm2.5 Concentration

EU countries to measure human development incorporating the ambient PM2.5 concentration effect. Using a principal component analysis, we extract the information for 2010 and 2015 using the Real GDP/capita, the life expectancy at birth, tertiary educational attainment, ambient PM2.5 concentration, and the death rate due to exposure to ambient PM2.5 concentration for 29 European countries. This paper has two main results: it gives an overview about the relationship between human development and ambient PM2.5 concentration, and second, it provides a new quantitative measure, PHDI, which reshapes the concept of human development and the exposure to ambient PM2.5 concentration. Using rating classes, we defined thresholds for both HDI and PHDI values to group the countries in four categories. When comparing the migration matrix from 2010 to 2015 for HDI values, some countries improved the development indicator (Romania, Poland, Malta, Estonia, Cyprus), while no downgrades were observed. When comparing the transition matrix using the newly developed indicator, PHDI, the upgrades observed were for Denmark and Estonia, while some countries like Spain and Italy moved to a lower rating class due to ambient PM2.5 concentration.

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