scholarly journals Polymorphic Inversion and Esterase Loci Complex on Chromosome 2 of Drosophila buzzatii II. Spatial Variation

1988 ◽  
Vol 41 (2) ◽  
pp. 239 ◽  
Author(s):  
WR Knibb ◽  
JSF Barker

The potential influence of linked inversions on allele frequency variation at the Est-l and Est-210ci among Australian populations of D. buzzatii was determined by statistical analyses of allele and inversion gametic frequencies. Most of the significant spatial and climatic associations found for all Est-l allele frequencies, and for one allele only of Est-2 (Est-2c+), were accounted for by their linkage disequilibria with the inversions, which covaried with environmental variables. Consistent with this result, the spatial and climatic associations for conditional Est-l and Est-2 allele frequencies tended to be different from those for the respective unadjusted allele frequencies. In one important respect, the results for Est-l and Est-2 were not altered by inversions. For both unadjusted and conditional Est-l allele frequencies, few climatic associations remain after correcting for geographic location, whereas for both unadjusted and conditional Est-2 allele frequencies, climatic associations remain after correcting for geographic location. Thus, apparent selection affecting allele frequencies at the Est-2 locus is not accounted for by linked inversions.

1987 ◽  
Vol 40 (3) ◽  
pp. 257 ◽  
Author(s):  
WR Knibb ◽  
PD East ◽  
JSF Barker

Chromosome 2 inversion, Est-l and Est-2 haplotype frequencies were determined for 19 wild D. buzzatii collections from the known range of this species in Australia. Three different chromosome 2 sequences (ST, j, j z3) were polymorphic across the collections. They occurred at overall frequencies which approximated those in the ancestral New World and colonized Old World populations, which indicated that no radical genetic change was associated with the colonization of Australia by D. buzzatii. Linkage disequilibria of Est-l and Est-2 alleles with the inversions tended to be strong, and consistent in direction, in almost all collections. The distributions of conditional allele frequencies within the different inversions were consistent with stochastic historical explanations for the linkage disequilibria. Significant linkage disequilibria between Est-l and Est-2 were evident after correcting for the inversions, but these disequilibria largely were restricted to southern (higher latitude) populations, and were inconsistent in direction among the collections. Hence, population bottlenecks may underlie these genic disequilibria.


Genetics ◽  
1986 ◽  
Vol 112 (3) ◽  
pp. 577-611
Author(s):  
J S F Barker ◽  
P D East ◽  
B S Weir

ABSTRACT Temporal variation in allozyme frequencies at six loci was studied by making monthly collections over 4 yr in one population of the cactophilic species Drosophila buzzatii. Ten sites were defined within the study locality, and for all temporal samples, separate collections were made at each of these sites. Population structure over microgeographic space and changes in population structure over time were analyzed using F-statistic estimators, and multivariate analyses of allele and genotype frequencies with environmental variables were carried out.—Allele frequencies showed significant variation over time, although there were no clear cyclical or seasonal patterns. A biplot analysis of allele frequencies over seasons within years and over years showed clear discrimination among years by alleles at four loci. During the 4 yr, three alleles showed directional changes which were associated with directional changes in environmental variables. Significant associations with one or more environmental variables were found for allele frequencies at every locus and for both expected and observed heterozygosities (except those for Est-1 and Est-2). Thus, variation in allele frequencies over time cannot be attributed solely to drift. Significant linkage disequilibria were detected among three loci (Est-2, Hex and Aldox), but there was no evidence for spatial or temporal patterns.—The F-statistic analyses showed significant differentiation among months within years for all loci, but the statistic used (coancestry) was heterogeneous among loci. Estimates of F (inbreeding) for all loci were significantly different from zero, with the loci in four groups, Adh-1 (negative), Pgm (small positive), Est-2 and Hex (intermediate) and Est-1 and Aldox (high positive). The correlation of genes within individuals within populations (f) for each locus in each month by site sample differed among loci, as did the patterns of change in f over time (seasons). Heterogeneity in the F-statistic estimates indicates that natural selection is directly or indirectly affecting allele and genotype frequencies at some loci. However, the F-statistic analyses showed essentially no microgeographic structure (i.e., among sites), although there was significant heterogeneity in allele frequencies among flies emerging from individual rots.—Thus, microspatial heterogeneity probably is most important at the level of individual rots, and coupled with habitat selection, it could be a major factor promoting diversifying selection and the maintenance of polymorphism. Resolution of the nature of this selection and of the apparent inbreeding detected at all loci except Adh-1 will require detailed study of the breeding structure of the population at the microhabitat level (individual rots) and of gene flow within the population.


1991 ◽  
Vol 48 (4) ◽  
pp. 722-731 ◽  
Author(s):  
R. W. Gauldie

The historical development of the idea of isolated stocks of fish that can be managed as separate management units has been as strongly tied to the intuitive idea of separate races as it has been to the practical necessities of jurisprudence and the estimation of both biomass and sustainable yield by fisheries managers. Demonstrating the existence of isolated fish stocks and delineating their boundaries has generally proved unsuccessful. Various techniques ranging from meristic count differences to polymorphic allelism have usually failed. However, in the pursuit of isolated stocks, biochemists have uncovered a great deal of information about the variation of polymorphic allele frequencies over time and space. Following the shift in opinion away from stochastic to natural selection mechanisms in allele frequency variation, it is evident that the observed variation in allele frequencies allows more insight into the biology of fishes than into the breeding structure of populations. These insights argue against the idea of isolated stocks of fish with homogeneous growth rates that are the basis of the sustainable yield models in favour of migration-linked stocks with heterogeneous growth rates.


Genetics ◽  
1985 ◽  
Vol 111 (3) ◽  
pp. 517-554
Author(s):  
Laurence D Mueller ◽  
Lorraine G Barr ◽  
Francisco J Ayala

ABSTRACT We have obtained monthly samples of two species, Drosophila pseudoobscura and Drosophila persimilis, in a natural population from Napa County, California. In each species, about 300 genes have been assayed by electrophoresis for each of seven enzyme loci in each monthly sample from March 1972 to June 1975. Using statistical methods developed for the purpose, we have examined whether the allele frequencies at different loci vary in a correlated fashion. The methods used do not detect natural selection when it is deterministic (e.g., overdominance or directional selection), but only when alleles at different loci vary simultaneously in response to the same environmental variations. Moreover, only relatively large fitness differences (of the order of 15%) are detectable. We have found strong evidence of correlated allele frequency variation in 13-20% of the cases examined. We interpret this as evidence that natural selection plays a major role in the evolution of protein polymorphisms in nature.


2016 ◽  
Vol 6 (12) ◽  
pp. 3893-3902 ◽  
Author(s):  
Elissa J Chesler ◽  
Daniel M Gatti ◽  
Andrew P Morgan ◽  
Marge Strobel ◽  
Laura Trepanier ◽  
...  

Abstract Multi-parent populations (MPPs) capture and maintain the genetic diversity from multiple inbred founder strains to provide a resource for high-resolution genetic mapping through the accumulation of recombination events over many generations. Breeding designs that maintain a large effective population size with randomized assignment of breeders at each generation can minimize the impact of selection, inbreeding, and genetic drift on allele frequencies. Small deviations from expected allele frequencies will have little effect on the power and precision of genetic analysis, but a major distortion could result in reduced power and loss of important functional alleles. We detected strong transmission ratio distortion in the Diversity Outbred (DO) mouse population on chromosome 2, caused by meiotic drive favoring transmission of the WSB/EiJ allele at the R2d2 locus. The distorted region harbors thousands of polymorphisms derived from the seven non-WSB founder strains and many of these would be lost if the sweep was allowed to continue. To ensure the utility of the DO population to study genetic variation on chromosome 2, we performed an artificial selection against WSB/EiJ alleles at the R2d2 locus. Here, we report that we have purged the WSB/EiJ allele from the drive locus while preserving WSB/EiJ alleles in the flanking regions. We observed minimal disruption to allele frequencies across the rest of the autosomal genome. However, there was a shift in haplotype frequencies of the mitochondrial genome and an increase in the rate of an unusual sex chromosome aneuploidy. The DO population has been restored to genome-wide utility for genetic analysis, but our experience underscores that vigilant monitoring of similar genetic resource populations is needed to ensure their long-term utility.


2013 ◽  
Vol 2013 ◽  
pp. 1-12 ◽  
Author(s):  
S. K. Sivadas ◽  
B. S. Ingole ◽  
C. E. G. Fernandes

The present paper examines the functional diversity-environment relation in a placer rich tropical bay. Understanding the environmental variables that determine the biodiversity pattern will help in the effective conservation plans of coastal habitat. However, few studies have been carried out on the biodiversity-environment relation from the diverse tropical coastal ecosystem. The geographic location of Kalbadevi Bay along the west coast of India provides an opportunity to study the functional diversity pattern of macrofauna along an environmental gradient. Additionally, the area is also a potential placer mining site. Seasonal sampling was carried out for macrofauna and environmental variables. Macrofaunal functional diversity showed significant temporal variation related to the environmental parameters. The most important environmental variables were organic matter and sediment texture. Filter feeders dominated during postmonsoon which is a period when the water column is enriched with sinking detritus. The deposit feeders which rapidly ingest the settled detritus and also transport it to deeper sediment for the subsurface deposit feeders dominated during premonsoon. Abundance of carnivores was high during premonsoon, a response to increase in food in terms of deposit feeders. The result thus indicates that the temporal environmental variation influenced the macrofaunal functional diversity pattern in the Kalbadevi Bay.


Genetics ◽  
1985 ◽  
Vol 110 (3) ◽  
pp. 495-511
Author(s):  
Laurence D Mueller ◽  
Bruce A Wilcox ◽  
Paul R Ehrlich ◽  
David G Heckel ◽  
Dennis D Murphy

ABSTRACT Estimates of allele frequencies at six polymorphic loci were collected over eight generations in two populations of Euphydryas editha. We have estimated, in addition, the effective population size for each generation for both populations with results from mark-recapture and other field data. The variation in allele frequencies generated by random genetic drift was then studied using computer simulations and our direct estimates of effective population size. Substantial differences between observed values and computer-generated expected values assuming drift alone were found for three loci (Got, Hk, Pgi) in one population. These observations are consistent with natural selection in a variable environment.


1986 ◽  
Vol 43 (5) ◽  
pp. 1074-1078 ◽  
Author(s):  
Eric Verspoor

Existing analyses of spatial patterns of transferrin (Tf) allele frequency variation in anadromous Atlantic salmon (Salmo salar) from rivers in North America have not utilized all available data. Further analysis shows that a latitudinal dine in Tf-4 allele frequency previously reported is an artefact of a major regional difference between populations from Newfoundland/Labrador and those sampled elsewhere. Furthermore, the allele frequencies of populations outside Newfoundland/Labrador show a significant association with the proportion of spawning fish in the populations having spent only one winter at sea. Fequencies in Newfoundland/Labrador are collectively consistent with this relationship but by themselves show no similar correlation. These results, combined with previously reported differences between anadromous and nonanadromous fish, suggest that selective forces, which vary with life history pattern, may operate on the polymorphism.


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