scholarly journals Pathways of Energy Metabolism Required for Phenotypic Expression of Nif+Kp Genes in Escherichia Coli

1979 ◽  
Vol 32 (6) ◽  
pp. 637 ◽  
Author(s):  
Mary L Skotnicki ◽  
Barry G Rolfe
Keyword(s):  
Escherichia Coli ◽  
Nitrogen Fixation ◽  
Energy Metabolism ◽  
Electron Transport ◽  
Nitrogenase Activity ◽  
Phenotypic Expression ◽  
E Coli ◽  
Substrate Level Phosphorylation ◽  
Fumarate Reduction ◽  
Substrate Level

In E. coli K12 (F'nif+ KP) hybrids, electron-transport-dependent phosphorylation is not necessary for anaerobic nitrogen fixation, and substrate level phosphorylation can provide sufficient ATP from glucose for nitrogenase activity, The fumarate-reduction system, however, is essential in these hybrids for the transfer of electrons to nitrogenase, This system is probably also involved in maintaining the membrane in the energized state, thereby allowing nitrogen fixation to occur

scholarly journals Effect of Dimethyl Sulphoxide on the Expression of Nitrogen Fixation in Bacteria

1977 ◽  
Vol 30 (2) ◽  
pp. 141 ◽  
Author(s):  
Mary L Skotnicki ◽  
Barry G Rolfe
Keyword(s):  
Escherichia Coli ◽  
Nitrogen Fixation ◽  
Energy Metabolism ◽  
Membrane Proteins ◽  
Klebsiella Pneumoniae ◽  
Dimethyl Sulphoxide ◽  
Rhizobium Trifolii ◽  
Nif Genes ◽  
E Coli ◽  
Selection Of

Storage in dimethyl sulphoxide (DMSO) of Escherichia coli K12 hybrids carrying nif+ genes from Klebsiella pneumoniae can result in selection of a defective nitrogen-fixing phenotype. Similar results are obtained with E. coli K12 hybrids containing the nitrogep-fixing capacity from Rhizobium trifolii. DMSO appears to affect particular inner membrane proteins associated with energy metabolism in E. coli K12 and four chromosomal regions (chID, chlG, his and unc) are associated with resistance to DMSO.

scholarly journals Uncoupling of Substrate-Level Phosphorylation in Escherichia coli during Glucose-Limited Growth

2012 ◽  
Vol 78 (19) ◽  
pp. 6908-6913 ◽  
Author(s):  
Poonam Sharma ◽  
Klaas J. Hellingwerf ◽  
Maarten J. Teixeira de Mattos ◽  
Martijn Bekker
Keyword(s):  
Escherichia Coli ◽  
Proton Translocation ◽  
Growth Conditions ◽  
Physiological Data ◽  
Synthesis Rate ◽  
Limited Growth ◽  
Content Type ◽  
E Coli ◽  
Substrate Level Phosphorylation ◽  
Substrate Level

ABSTRACTThe respiratory chain ofEscherichia colicontains three different cytochrome oxidases. Whereas the cytochromebooxidase and the cytochromebd-I oxidase are well characterized and have been shown to contribute to proton translocation, physiological data suggested a nonelectrogenic functioning of the cytochromebd-II oxidase. Recently, however, this view was challenged by anin vitrobiochemical analysis that showed that the activity of cytochromebd-II oxidase does contribute to proton translocation with an H+/e−stoichiometry of 1. Here, we propose that this apparent discrepancy is due to the activities of two alternative catabolic pathways: the pyruvate oxidase pathway for acetate production and a pathway with methylglyoxal as an intermediate for the production of lactate. The ATP yields of these pathways are lower than those of the pathways that have so far always been assumed to catalyze the main catabolic flux under energy-limited growth conditions (i.e., pyruvate dehydrogenase and lactate dehydrogenase). Inclusion of these alternative pathways in the flux analysis of growingE. colistrains for the calculation of the catabolic ATP synthesis rate indicates an electrogenic function of the cytochromebd-II oxidase, compatible with an H+/e−ratio of 1. This analysis shows for the first time the extent of bypassing of substrate-level phosphorylation inE. coliunder energy-limited growth conditions.

scholarly journals The reconstitution of oxidase activity in membranes derived from a 5-aminolaevulinic acid-requiring mutant of Escherichia coli

1973 ◽  
Vol 136 (4) ◽  
pp. 877-884 ◽  
Author(s):  
Bruce A. Haddock
Keyword(s):  
Escherichia Coli ◽  
Electron Transport ◽  
Cytochrome B ◽  
Oxidase Activity ◽  
Nadh Dehydrogenase ◽  
Carbon Sources ◽  
Protoporphyrin Ix ◽  
Side Chain ◽  
E Coli ◽  
Aminolaevulinic Acid

1. The reconstitution of oxidase activity in cell-free extracts of a mutant of Escherichia coli K12Ymel, that require 5-aminolaevulinic acid for growth on non-fermentable carbon sources, is described. 2. The reconstitution is dependent on haematin or a haem extract from a prototrophic strain of E. coli, and the product of the reaction has been identified as NADH-reducible cytochrome b. 3. The requirement for haematin cannot be replaced by four other porphyrins. Coproporphyrin III does not inhibit the haematin-dependent reconstitution, mesoporphyrin IX and protoporphyrin IX apparently compete with haematin for a binding site on the cytochrome apoprotein(s) and deuteroporphyrin IX binds to cytochrome apoprotein(s) and cannot be subsequently replaced by haematin. 4. The properties of electron-transport particles from cell-free extracts of the mutant strain, grown aerobically in the presence or absence of 5-aminolaevulinic acid, are described. In the absence of 5-aminolaevulinic acid no detectable cytochromes are produced, and oxidase activities are lowered but there is no apparent effect on the activities of the NADH dehydrogenase and d-lactate dehydrogenase. 5. The reconstitution of oxidase activity by electron-transport particles from cells grown in the absence of 5-aminolaevulinic acid requires ATP and haematin, and the product of the reaction was identified as NADH-reducible cytochrome b. 6. It is concluded that the cytochrome apoproteins are synthesized and incorporated into the cytoplasmic membrane of E. coli in the absence of haem synthesis. The subsequent reconstitution of functional cytochrome(s) requires protohaem, but the nature of the side chain on the 2 and 4 positions of the porphyrin appears to be important.

scholarly journals The role of Fnr paralogs for controlling anaerobic metabolism in diazotroph Paenibacillus polymyxa WLY78

2020 ◽  
Author(s):  
Haowen Shi ◽  
Yongbin Li ◽  
Tianyi Hao ◽  
Xiaomeng Liu ◽  
Xiyun Zhao ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Nitrogen Fixation ◽  
Bacillus Cereus ◽  
Anaerobic Condition ◽  
Anaerobic Metabolism ◽  
Nitrogenase Activity ◽  
Paenibacillus Polymyxa ◽  
Transcription Analysis ◽  
Double Deletion ◽  
Expression Of Genes

ABSTRACTFnr is a transcriptional regulator that controls the expression of a variety of genes in response to oxygen limitation in bacteria. Genome sequencing revealed four genes (fnr1, fnr3, fnr5 and fnr7) coding for Fnr proteins in Paenibacillus polymyxa WLY78. Fnr1 and Fnr3 showed more similarity to each other than to Fnr5 and Fnr7. Also, Fnr1 and Fnr3 exhibited high similarity with Bacillus cereus Fnr and Bacillus subtilis Fnr in sequence and structures. Deletion analysis showed that the four fnr genes, especially fnr1 and fnr3, have significant impacts on the growth and nitrogenase activity. Single deletion of fnr1 or fnr3 led to 50% reduction in nitrogenase activity and double deletion of fnr1 and fnr3 resulted to 90% reduction in activity. Both of the aerobically purified His-tagged Fnr1 and His-tagged Fnr3 in Escherichia coli could bind to the specific DNA promoter. Genome-wide transcription analysis showed that Fnr1 and Fnr3 indirectly activated expression of nif (nitrogen fixation) genes and Fe transport genes under anaerobic condition. Fnr1 and Fnr3 inhibited expression of the genes involved in aerobic respiratory chain and activated expression of genes responsible for anaerobic electron acceptor genes.IMPORTANCEPaenibacillus is a genus of Gram-positive, facultative anaerobic and endospore-forming bacteria. The members of nitrogen-fixing Paenibacillus have great potential use as a bacterial fertilizer in agriculture. However, the functions of fnr gene(s) in nitrogen fixation and other metabolisms in Paenibacillus spp. are not known. Here, we revealed that copy numbers vary largely among different Paenibacillus species and strains. Deletion and complementation analysis demonstrated that fnr1 and fnr3 have significant impacts on the growth and nitrogenase activity. Both of the aerobically purified His-tagged Fnr1 and His-tagged Fnr3 purified in Escherichia coli could bind to the specific DNA promoter as Bacillus cereus Fnr did. Fnr1 and Fnr3 indirectly activated nif expression under anaerobic condition. Fnr1 and Fnr3 directly or indirectly activated or inhibited expression of many important genes involved in respiration, energy metabolism, Fe uptake and potentially specific electron transport for nitrogenase under anaerobic condition. This study not only reveals the roles of fnr genes in nitrogen fixation and anaerobic metabolism, but also provides insight into the evolution and regulatory mechanisms of fnr in Paenibacillus.

scholarly journals Characterization and phenotypic control of the cytochrome content of Escherichia coli

1979 ◽  
Vol 182 (2) ◽  
pp. 465-472 ◽  
Author(s):  
Graeme A. Reid ◽  
W. John Ingledew
Keyword(s):  
Escherichia Coli ◽  
Electron Transport ◽  
Cytochrome B ◽  
Terminal Electron Acceptor ◽  
E Coli ◽  
Reduction Potentials ◽  
Electrode Potentials ◽  
Point Potential ◽  
Oxidation Reduction ◽  
Cytochrome D

1. Electron-transport particles derived from Escherichia coli grown aerobically contain three b-type cytochromes with mid-point oxidation–reduction potentials at pH7 of +260mV, +80mV and −50mV, with n=1 for each. The variation of these values with pH was determined. 2. E. coli develops a different set of b-type cytochromes when grown anaerobically on glycerol with fumarate or nitrate as terminal electron acceptor. Electron-transport particles of fumarate-grown cells contain b-type cytochromes with mid-point potentials at pH7 of +140mV and +250mV (n=1). These two cytochromes are also present in cells grown with nitrate as terminal acceptor, where an additional cytochrome b with a mid-point potential of +10mV (n=1) is developed. 3. The wavelengths of the α-absorption-band maxima of the b-type cytochromes at 77K were: (a) for aerobically grown cells, cytochrome b (Em7 +260mV), 556nm and 563nm, cytochrome b (Em7 +80mV), 556nm and cytochrome b (Em7−50mV), 558nm; (b) for anaerobically grown cells, cytochrome b (Em7 +250mV), 558nm, cytochrome b (Em7 +40mV), 555nm and cytochrome b (Em7 +10mV), 556nm. 4. Cytochrome d was found to have a mid-point potential at pH7 of +280mV (n=1). 5. Cytochrome a1 was resolved as two components of equal magnitude with mid-point potentials of +260mV and +160mV (n=1). 6. Redox titrations performed in the presence of CO showed that one of the b-type cytochromes in the aerobically grown cultures was reduced, even at the upper limits of our range of electrode potentials (above +400mV). Cytochrome d was also not oxidizable in the presence of CO. Neither of the cytochromes a1 was affected by the presence of CO.

scholarly journals Oxidative phosphorylation in Escherichia coli K12. An uncoupled mutant with altered membrane structure

1974 ◽  
Vol 138 (2) ◽  
pp. 211-215 ◽  
Author(s):  
G. B. Cox ◽  
F. Gibson ◽  
L. McCann
Keyword(s):  
Escherichia Coli ◽  
Electron Transport ◽  
Membrane Structure ◽  
Mutant Allele ◽  
Adenosine Triphosphatase ◽  
Mineral Salts ◽  
Normal Cells ◽  
E Coli ◽  
Escherichia Coli K12 ◽  
Membrane Bound

1. A new mutant strain (AN228) of Escherichia coli K12, unable to couple phosphorylation to electron transport, has been isolated. The mutant allele (unc-405), in strain AN228, was found to map near the uncA and uncB genes at about minute 74 on the E. coli genome. 2. A transductant strain (AN285) carrying the unc-405 allele is similar to the uncA and uncB mutants described previously in that it is unable to grow on succinate, gives a low aerobic yield on limiting concentrations of glucose, has a normal rate of electron transport, is unable to couple phosphorylation to electron transport, and lacks ATP-dependent transhydrogenase activity. 3. Strain AN285 (unc-405) is similar to an uncA mutant, but different from an uncB mutant, in that it is unable to grow anaerobically in a glucose–mineral-salts medium, and membrane preparations do not have Mg2+-stimulated adenosine triphosphatase activity. 4. Strain AN285 (unc-405) does not form an aggregate analogous to the membrane-bound Mg2+-stimulated adenosine triphosphatase aggregate found in normal cells. In this respect it differs from strain AN249 (uncA−), which forms an inactive membrane-bound Mg2+-stimulated adenosine triphosphatase aggregate.

scholarly journals Prevalence of Hemolysin Genes and Comparison ofehxASubtype Patterns in Shiga Toxin-Producing Escherichia coli (STEC) and Non-STEC Strains from Clinical, Food, and Animal Sources

2013 ◽  
Vol 79 (20) ◽  
pp. 6301-6311 ◽  
Author(s):  
Sandra C. Lorenz ◽  
Insook Son ◽  
Anna Maounounen-Laasri ◽  
Andrew Lin ◽  
Markus Fischer ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Virulence Factors ◽  
Shiga Toxin ◽  
Phenotypic Expression ◽  
Food Sources ◽  
Polymorphism Analysis ◽  
Subtype C ◽  
Content Type ◽  
E Coli ◽  
Subtype A

ABSTRACTShiga toxin-producingEscherichia coli(STEC) belonging to certain serogroups (e.g., O157 and O26) can cause serious conditions like hemolytic-uremic syndrome (HUS), but other strains might be equally pathogenic. While virulence factors, likestxandeae, have been well studied, little is known about the prevalence of theE. colihemolysin genes (hlyA,ehxA,e-hlyA, andsheA) in association with these factors. Hemolysins are potential virulence factors, andehxAandhlyAhave been associated with human illness, but the significance ofsheAis unknown. Hence, 435E. colistrains belonging to 62 different O serogroups were characterized to investigate gene presence and phenotypic expression of hemolysis. We further investigatedehxAsubtype patterns inE. coliisolates from clinical, animal, and food sources. WhilesheAandehxAwere widely distributed,e-hlyAandhlyAwere rarely found. Most strains (86.7%) were hemolytic, and significantly more hemolytic (95%) than nonhemolytic strains (49%) carriedstxand/oreae(P< 0.0001).ehxAsubtyping, as performed by using PCR in combination with restriction fragment length polymorphism analysis, resulted in six closely related subtypes (>94.2%), with subtypes A/D beingeae-negative STECs and subtypes B, C, E, and Feaepositive. Unexpectedly,ehxAsubtype patterns differed significantly between isolates collected from different sources (P< 0.0001), suggesting that simple linear models of exposure and transmission need modification; animal isolates carried mostly subtypes A/C (39.3%/42.9%), food isolates carried mainly subtype A (81.9%), and clinical isolates carried mainly subtype C (66.4%). Certain O serogroups correlated with particularehxAsubtypes: subtype A with O104, O113, and O8; B exclusively with O157; C with O26, O111, and O121.

scholarly journals Construction and evolution of anEscherichia colistrain relying on nonoxidative glycolysis for sugar catabolism

2018 ◽  
Vol 115 (14) ◽  
pp. 3538-3546 ◽  
Author(s):  
Paul P. Lin ◽  
Alec J. Jaeger ◽  
Tung-Yun Wu ◽  
Sharon C. Xu ◽  
Abraxa S. Lee ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Energy Metabolism ◽  
Rational Design ◽  
Minimal Medium ◽  
Global Regulation ◽  
Gene Deletions ◽  
Global Regulators ◽  
E Coli ◽  
Almost All ◽  
Tracer Experiments

The Embden–Meyerhoff–Parnas (EMP) pathway, commonly known as glycolysis, represents the fundamental biochemical infrastructure for sugar catabolism in almost all organisms, as it provides key components for biosynthesis, energy metabolism, and global regulation. EMP-based metabolism synthesizes three-carbon (C3) metabolites before two-carbon (C2) metabolites and must emit one CO2in the synthesis of the C2 building block, acetyl-CoA, a precursor for many industrially important products. Using rational design, genome editing, and evolution, here we replaced the native glycolytic pathways inEscherichia coliwith the previously designed nonoxidative glycolysis (NOG), which bypasses initial C3 formation and directly generates stoichiometric amounts of C2 metabolites. The resulting strain, which contains 11 gene overexpressions, 10 gene deletions by design, and more than 50 genomic mutations (including 3 global regulators) through evolution, grows aerobically in glucose minimal medium but can ferment anaerobically to products with nearly complete carbon conservation. We confirmed that the strain metabolizes glucose through NOG by13C tracer experiments. This redesignedE. colistrain represents a different approach for carbon catabolism and may serve as a useful platform for bioproduction.

scholarly journals The energy-linked transhydrogenase reaction in respiratory mutants of Escherichia coli K 12

1971 ◽  
Vol 125 (2) ◽  
pp. 489-493 ◽  
Author(s):  
G. B. Cox ◽  
N. A. Newton ◽  
J. D. Butlin ◽  
F. Gibson
Keyword(s):  
Escherichia Coli ◽  
Energy Source ◽  
Electron Transport ◽  
Electron Transport Chain ◽  
Adenosine Triphosphatase ◽  
E Coli ◽  
Transport Chain ◽  
Mutant Strains ◽  
K 12 ◽  
A Site

1. Energy-linked and non-energy-linked transhydrogenase activities were assayed in membrane preparations from normal Escherichia coli K 12 and from various mutant strains. 2. The energy-linked transhydrogenase, which uses ATP as energy source, was dependent for activity on the presence of a functional Mg2++Ca2+-stimulated adenosine triphosphatase. 3. Neither of the quinones formed by E. coli, namely ubiquinone-8 and menaquinone-8, was required for normal ATP-dependent energy-linked transhydrogenase activity. 4. The energy-linked transhydrogenase was inhibited by piericidin A at a site unrelated to the sites of inhibition of the electron-transport chain by piericidin A.

scholarly journals STUDIES OF THE MITOCHONDRIAL ENERGY-TRANSFER SYSTEM OF BROWN ADIPOSE TISSUE

1967 ◽  
Vol 34 (1) ◽  
pp. 293-310 ◽  
Author(s):  
O. Lindberg ◽  
J. De Pierre ◽  
E. Rylander ◽  
B. A. Afzelius
Keyword(s):  
Adipose Tissue ◽  
Electron Transport ◽  
Brown Adipose Tissue ◽  
Elementary Particles ◽  
Brown Fat ◽  
Morphological Data ◽  
Acid Oxidation ◽  
Substrate Level Phosphorylation ◽  
Brown Adipose ◽  
Substrate Level

An investigation of the mechanisms of norepinephrine action and heat production in brown adipose tissue from newborn rabbits has been carried out. Data obtained with the use of biochemical techniques has been correlated with morphological data from electron microscopy. Norepinephrine was found to stimulate the respiration of brown fat in vitro. Inhibitors of glycolysis abolish this effect, whereas inhibitors of oxidative phosphorylation do not, at least not to the same extent. Brown fat is readily permeable to added Krebs cycle intermediates. Substrate level phosphorylation, but no electron transport-coupled phosphorylation, could be demonstrated in isolated mitochondria. It is suggested that the rate of fatty acid oxidation is limited by the availability of phosphate acceptor systems which break down ATP formed at the substrate level and thus provide ADP for further substrate level phosphorylation. The theory of respiratory control by the action of reesterification of fatty acids is discussed in the light of these findings. Under the electron microscope, brown fat mitochondria are characterized by their large size, tightly packed cristae, and by the different types of granules in the matrix. No elementary particles are seen when the mitochondria are examined by the negative-staining technique. The absence of electron transport-coupled phosphorylation together with the apparent absence of elementary particles seems to be of particular significance.

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