Trends in temperate Australian grass breeding and selection

2003 ◽  
Vol 54 (3) ◽  
pp. 211 ◽  
Author(s):  
Rex Oram ◽  
Greg Lodge

Current trends in grass cultivar development are reviewed, with respect to the range of species involved, and the objectives and methodology within each species. Extrapolations and predictions are made about future directions and methodologies. It is assumed that selection will necessarily cater for the following environmental changes: (1) higher year-round temperatures, higher variability of rainfall incidence, and lower total winter and spring rainfall along the south of the continent; (2) higher nutrient and lime inputs as land utilisation intensifies; and (3) the grazing management requirements of the important pasture components will be increasingly defined and met in practice.The 'big four' species, perennial ryegrass, phalaris, cocksfoot and tall fescue, will continue to be the most widely sown species in temperate regions for many decades, with the latter 3 increasing most in area and genetic differentiation. However, species diversification will continue, especially with native grasses, legumes, and shrubs from fertile regions of Australia and exotics from little-explored parts of the world, such as South Africa, western North and South America, coastal Caucasus, and Iraq–Iran. By contrast, the recent high rate of species diversification in the tropics and subtropics will probably give way to a much lower rate of cultivar development by refinement and diversification within the established species. Domestication of native grasses will continue for amenity, recreational, land protection, and grazing purposes. As seed harvesting technologies and ecological knowledge improve, natural stands will become increasingly important as local sources of seed. It is suggested that many native grasses have been greatly changed by natural selection so as to withstand strong competition from introduced species under conditions of higher soil fertility and grazing pressure. Conversely, some introduced species are being selected consciously and naturally to persist in regions with irregular rainfall and less fertile soils. Therefore, the distinction between native and introduced grasses may be disappearing, and many populations of native species could now be as foreign to the habitats of pre-European settlement as are populations of introduced species that have been evolving here for 50–200 years. Methods used for genetic improvement will continue to be selection among both overseas accessions and the many native and introduced populations that have responded to natural selection in Australia. As well, there will be deliberate recurrent crossing and selection programs in both native and introduced species for specific purposes and environments. Increasingly, molecular biology methods will complement traditional ones, at first by the provision of DNA markers to assist the selection of complex traits, and for proving distinctness to obtain Plant Breeders' Rights for new cultivars. Later, genetic engineering will be used to manipulate nutritive value, resistance to fungal and viral diseases, and breeding systems, especially cytoplasmic male sterility and apomixis, to utilise heterosis in hybrid cultivars of grasses, particularly for dairying and intensive meat production.Areas where the practice and management of grass breeding and selection programs could be improved are highlighted throughout the review, and reiterated in a concluding statement. Most problems appear to stem from inadequate training in population ecology, population genetics, evolution, and quantitative inheritance.

2010 ◽  
Vol 23 (10) ◽  
pp. 2163-2175 ◽  
Author(s):  
J. PÉREZ-ALQUICIRA ◽  
F. E. MOLINA-FREANER ◽  
D. PIÑERO ◽  
S. G. WELLER ◽  
E. MARTÍNEZ-MEYER ◽  
...  

2020 ◽  
Author(s):  
Alan Garcia-Elfring ◽  
Antoine Paccard ◽  
Timothy J. Thurman ◽  
Ben A. Wasserman ◽  
Eric P. Palkovacs ◽  
...  

AbstractParallel evolution is considered strong evidence for natural selection. However, few studies have investigated the process of parallel selection as it plays out in real time. The common approach is to study historical signatures of selection in populations already well adapted to different environments. Here, to document selection in action under natural conditions, we study six populations of threespine stickleback (Gasterosteus aculeatus) inhabiting bar-built estuaries that undergo seasonal cycles of environmental changes. Estuaries are periodically isolated from the ocean due to sandbar formation during dry summer months, with concurrent environmental shifts that resemble the long-term changes associated with postglacial colonization of freshwater habitats by marine populations. We used pooled whole-genome sequencing (Pool-WGS) to track seasonal allele frequency changes in these populations and search for signatures of natural selection. We found consistent changes in allele frequency across estuaries, suggesting a potential role for parallel selection. Functional enrichment among candidate genes included transmembrane ion transport and calcium binding, which are important for osmoregulation and ion balance. The genomic changes that occur in threespine stickleback from bar-built estuaries could provide a glimpse into the early stages of adaptation that have occurred in many historical marine to freshwater transitions.


2020 ◽  
Author(s):  
Brody Holohan ◽  
Raphael Laderman

AbstractGene-environment interactions are at the heart of why many complex traits are not fully heritable, and why prediction of disease incidence and individual response to environmental changes based on genetics has been underwhelming in utility. Understanding these interactions is the primary limiting factor for the application of personalized medicine, but current methods are not well suited for dealing with complex traits that pose both a dimensionality and sparse data problem to unsupervised analysis methods. Genteract has developed a proprietary analytical technique that allows for detection and interpretation of GxEs regarding specific pairs of a single phenotype with a single environmental factor; these methods allow us to develop a platform that can be used to predict how individuals will respond to changes in their environment based on their genetics. To validate the methods we performed two types of testing: cross-validation against a dataset of clinical study results, and application of the methods in a simulated dataset. These tests enable a greater understanding of the methods’ utility, statistical power and predictive capabilities.


2018 ◽  
Vol 9 (1) ◽  
Author(s):  
Jing Guo ◽  
Yang Wu ◽  
Zhihong Zhu ◽  
Zhili Zheng ◽  
Maciej Trzaskowski ◽  
...  

2015 ◽  
Vol 747 ◽  
pp. 306-309 ◽  
Author(s):  
Norizawati Mohd Ayob ◽  
Norhasimah Ismail ◽  
Tarmiji Masron

Land use changes are a key driver in global environmental changes and had a significant impact on the climate at all scales. Various human activities that took place thousands of years ago have an impact on the earth's surface. Today, with the limited supply and high demand, land use crisis became a big issue for the most countries. Changes in land use are not actually only providing a history of the area, but it also describes the way of life of its local communities. In the interdisciplinary research for land use study, cultural values, knowledge and perceptions of knowledge has been recognized as a major factor in determining the adopted approach applied in land use management in that area. Therefore, this paper tries to evaluate the role and potential of the integration of TLEK and GIS in mapping the series of changes in land use.Keyword: Local knowledge, TLEK, land use mapping & conceptual framework


2014 ◽  
Vol 5 (1) ◽  
Author(s):  
Adam G. Jones ◽  
Reinhard Bürger ◽  
Stevan J. Arnold

1989 ◽  
Vol 69 (1) ◽  
pp. 251-254 ◽  
Author(s):  
T. LAWRENCE ◽  
C. D. RATZLAFF

Twelve strains of native grasses which had undergone selection prior to testing were compared with three introduced grasses under the same management system. On the basis of the 5-yr mean D M yield, crested wheatgrass and meadow bromegrass produced 79% more forage than the native species. Crested wheatgrass and intermediate wheat-grass produced 167% more seed on average than other species. The native species, especially slender wheatgrass and awned wheatgrass suffered considerable winter injury and winter killing. This study supports the belief that most native grasses are shortlived and low-yielding compared to introduced species and that breeders should concentrate their efforts on the introduced species which have an inheritantly higher yield potential.Key words: native grasses, introduced grasses, Agropyron, Bromus, Elymus, Thinopyrum, winter killing, breeding


Author(s):  
Andrew J. M. Swafford ◽  
Todd H. Oakley

Eyes are quintessential complex traits and our understanding of their evolution guides understanding of trait evolution in general. A long-standing account of eye evolution argues natural selection favors morphological variations that allow increased functionality for sensing light (Darwin 1859; v. Salvini-Plawen and Mayr 1977; Nilsson and Pelger 1994; Nilsson 2013). While certainly true in part, this focus on visual performance does not entirely explain why diffuse photosensitivity persists even after eyes evolve, or why eyes evolved many times, each time using similar building blocks. Here we briefly review a vast literature indicating most genetic components of eyes historically responded to stress caused directly by light, including UV damage of DNA, oxidative stress, and production of aldehydes. We propose light-induced stress had a direct and prominent role in the evolution of eyes by bringing together genes to repair and prevent damage from light-stress, both before and during the evolution of eyes themselves. Stress-repair and stress-prevention genes were perhaps originally deployed as plastic responses to light and/or as beneficial mutations genetically driving expression where light was prominent. These stress-response genes sense, shield, and refract light but only under UV exposure. Once under regulatory-genetic control, they could be expressed before UV stress appeared, evolve as a single unit, and be influenced by natural selection to increase functionality for sensing light, ultimately leading to complex eyes and behaviors. Recognizing the potentially prominent role of stress in eye evolution invites discussions of plasticity and assimilation and provides a hypothesis for why similar genes are repeatedly used in convergent eyes. Broadening the drivers of eye evolution encourages consideration of multi-faceted mechanisms of plasticity/assimilation and mutation/selection for complex novelties and innovations in general.


2020 ◽  
Author(s):  
Carmen Amador ◽  
Yanni Zeng ◽  
Rosie Walker ◽  
Archie Campbell ◽  
Andrew M. McIntosh ◽  
...  

ABSTRACTVariation in complex traits related to obesity, such as body weight and body mass index, has a genetic basis with heritabilities between 40 and 70%. Nonetheless, the so-called global obesity pandemic is usually associated with environmental changes related to diet, lifestyle, and sociocultural and socioeconomic changes. However, most genetic studies do not include all relevant environmental covariates so their contribution, alongside genetics, to variation in obesity-related traits can not be assessed. Similarly, some studies have described interactions between a few individual genes linked to obesity and different environmental variables but the total contribution to differences between individuals is unknown. In this study we explored the effect of smoking and gene-by-smoking interactions on obesity related traits from a genome-wide perspective to estimate the amount of variance they explain by modelling them using self-reported data and a proxy created using methylation data. Our results indicate that exploiting omic measures as proxies for environmental variation can improve our models for complex traits such as obesity and can be used as a substitute of environmental measures when they are not available or jointly to improve their accuracy.


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