Mean-field models of populations of quadratic integrate-and-fire neurons with noise on the basis of the circular cumulant approach

2021 ◽  
Vol 31 (8) ◽  
pp. 083112
Author(s):  
Denis S. Goldobin
Keyword(s):  
Mean Field ◽  
Integrate And Fire ◽  
Mean Field Models

scholarly journals A mean-field approach to the dynamics of networks of complex neurons, from nonlinear Integrate-and-Fire to Hodgkin-Huxley models

2019 ◽  
Author(s):  
M. Carlu ◽  
O. Chehab ◽  
L. Dalla Porta ◽  
D. Depannemaecker ◽  
C. Héricé ◽  
...  
Keyword(s):  
Temporal Dynamics ◽  
Mean Field ◽  
Population Models ◽  
Inhibitory Neurons ◽  
Mathematical Tool ◽  
Mean Field Model ◽  
Integrate And Fire ◽  
Mean Field Models ◽  
Electrophysiological Recordings ◽  
Field Formalism

AbstractWe present a mean-field formalism able to predict the collective dynamics of large networks of conductance-based interacting spiking neurons. We apply this formalism to several neuronal models, from the simplest Adaptive Exponential Integrate-and-Fire model to the more complex Hodgkin-Huxley and Morris-Lecar models. We show that the resulting mean-field models are capable of predicting the correct spontaneous activity of both excitatory and inhibitory neurons in asynchronous irregular regimes, typical of cortical dynamics. Moreover, it is possible to quantitatively predict the populations response to external stimuli in the form of external spike trains. This mean-field formalism therefore provides a paradigm to bridge the scale between population dynamics and the microscopic complexity of the individual cells physiology.NEW & NOTEWORTHYPopulation models are a powerful mathematical tool to study the dynamics of neuronal networks and to simulate the brain at macroscopic scales. We present a mean-field model capable of quantitatively predicting the temporal dynamics of a network of complex spiking neuronal models, from Integrate-and-Fire to Hodgkin-Huxley, thus linking population models to neurons electrophysiology. This opens a perspective on generating biologically realistic mean-field models from electrophysiological recordings.

scholarly journals A mean-field approach to the dynamics of networks of complex neurons, from nonlinear Integrate-and-Fire to Hodgkin–Huxley models

2020 ◽  
Vol 123 (3) ◽  
pp. 1042-1051 ◽  
Author(s):  
M. Carlu ◽  
O. Chehab ◽  
L. Dalla Porta ◽  
D. Depannemaecker ◽  
C. Héricé ◽  
...  
Keyword(s):  
Temporal Dynamics ◽  
Mean Field ◽  
Population Models ◽  
Mathematical Tool ◽  
Mean Field Model ◽  
Integrate And Fire ◽  
Mean Field Models ◽  
Electrophysiological Recordings ◽  
The Brain ◽  
Powerful Mathematical Tool

Population models are a powerful mathematical tool to study the dynamics of neuronal networks and to simulate the brain at macroscopic scales. We present a mean-field model capable of quantitatively predicting the temporal dynamics of a network of complex spiking neuronal models, from Integrate-and-Fire to Hodgkin–Huxley, thus linking population models to neurons electrophysiology. This opens a perspective on generating biologically realistic mean-field models from electrophysiological recordings.

Ion Pairing and Dielectric Decrement in Glycosaminoglycan Brushes

2020 ◽  
Author(s):  
James Sterling ◽  
Wenjuan Jiang ◽  
Wesley M. Botello-Smith ◽  
Yun L. Luo
Keyword(s):  
Molecular Dynamics ◽  
Ion Pairs ◽  
Mean Field ◽  
Salt Bridge ◽  
Ion Pairing ◽  
Donnan Potential ◽  
Mean Field Models ◽  
Ion Exclusion ◽  
Dynamics Simulations ◽  
Contact Ion Pairs

Molecular dynamics simulations of hyaluronic acid and heparin brushes are presented that show important effects of ion-pairing, water dielectric decrease, and co-ion exclusion. Results show equilibria with electroneutrality attained through screening and pairing of brush anionic charges by cations. Most surprising is the reversal of the Donnan potential that would be expected based on electrostatic Boltzmann partitioning alone. Water dielectric decrement within the brush domain is also associated with Born hydration-driven cation exclusion from the brush. We observe that the primary partition energy attracting cations to attain brush electroneutrality is the ion-pairing or salt-bridge energy associated with cation-sulfate and cation-carboxylate solvent-separated and contact ion pairs. Potassium and sodium pairing to glycosaminoglycan carboxylates and sulfates consistently show similar abundance of contact-pairing and solvent-separated pairing. In these crowded macromolecular brushes, ion-pairing, Born-hydration, and electrostatic potential energies all contribute to attain electroneutrality and should therefore contribute in mean-field models to accurately represent brush electrostatics.

scholarly journals PDE limits of stochastic SIS epidemics on networks

2020 ◽  
Vol 8 (4) ◽  
Author(s):  
F Di Lauro ◽  
J-C Croix ◽  
L Berthouze ◽  
I Z Kiss
Keyword(s):  
Network Inference ◽  
Mean Field ◽  
Population Level ◽  
Death Process ◽  
Disease Dynamics ◽  
Epidemic Outbreak ◽  
Numerical Tests ◽  
Mean Field Models ◽  
Stochastic Epidemic ◽  
Fokker Planck Equations

Abstract Stochastic epidemic models on networks are inherently high-dimensional and the resulting exact models are intractable numerically even for modest network sizes. Mean-field models provide an alternative but can only capture average quantities, thus offering little or no information about variability in the outcome of the exact process. In this article, we conjecture and numerically demonstrate that it is possible to construct partial differential equation (PDE)-limits of the exact stochastic susceptible-infected-susceptible epidemics on Regular, Erdős–Rényi, Barabási–Albert networks and lattices. To do this, we first approximate the exact stochastic process at population level by a Birth-and-Death process (BD) (with a state space of $O(N)$ rather than $O(2^N)$) whose coefficients are determined numerically from Gillespie simulations of the exact epidemic on explicit networks. We numerically demonstrate that the coefficients of the resulting BD process are density-dependent, a crucial condition for the existence of a PDE limit. Extensive numerical tests for Regular, Erdős–Rényi, Barabási–Albert networks and lattices show excellent agreement between the outcome of simulations and the numerical solution of the Fokker–Planck equations. Apart from a significant reduction in dimensionality, the PDE also provides the means to derive the epidemic outbreak threshold linking network and disease dynamics parameters, albeit in an implicit way. Perhaps more importantly, it enables the formulation and numerical evaluation of likelihoods for epidemic and network inference as illustrated in a fully worked out example.

scholarly journals Connecting real glasses to mean-field models

2021 ◽  
Vol 154 (9) ◽  
pp. 094506
Author(s):  
Ujjwal Kumar Nandi ◽  
Walter Kob ◽  
Sarika Maitra Bhattacharyya
Keyword(s):  
Mean Field ◽  
Mean Field Models
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