Rich phase transitions in strongly confined polymer–nanoparticle mixtures: Nematic ordering, crystallization, and liquid–liquid phase separation

2021 ◽  
Vol 154 (2) ◽  
pp. 024901
Author(s):  
Supriya Roy ◽  
Yeng-Long Chen
Keyword(s):  
Phase Transitions ◽  
Phase Separation ◽  
Liquid Phase ◽  
Liquid Phase Separation ◽  
Rich Phase ◽  
Polymer Nanoparticle ◽  
Nematic Ordering ◽  
Confined Polymer ◽  
Liquid Liquid Phase Separation

scholarly journals Prion-Like Proteins in Phase Separation and Their Link to Disease

Biomolecules ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1014
Author(s):  
Macy L. Sprunger ◽  
Meredith E. Jackrel
Keyword(s):  
Protein Folding ◽  
Phase Transitions ◽  
Phase Separation ◽  
Liquid Phase ◽  
Protein Misfolding ◽  
Solid Phase ◽  
Liquid Phase Separation ◽  
Therapeutic Approaches ◽  
Important Physiological Process ◽  
Liquid Liquid Phase Separation

Aberrant protein folding underpins many neurodegenerative diseases as well as certain myopathies and cancers. Protein misfolding can be driven by the presence of distinctive prion and prion-like regions within certain proteins. These prion and prion-like regions have also been found to drive liquid-liquid phase separation. Liquid-liquid phase separation is thought to be an important physiological process, but one that is prone to malfunction. Thus, aberrant liquid-to-solid phase transitions may drive protein aggregation and fibrillization, which could give rise to pathological inclusions. Here, we review prions and prion-like proteins, their roles in phase separation and disease, as well as potential therapeutic approaches to counter aberrant phase transitions.

scholarly journals Liquid-liquid phase separation and morphology of internally mixed dicarboxylic acids/ammonium sulfate/water particles

2011 ◽  
Vol 11 (10) ◽  
pp. 29141-29194 ◽  
Author(s):  
M. Song ◽  
C. Marcolli ◽  
U. K. Krieger ◽  
A. Zuend ◽  
T. Peter
Keyword(s):  
Phase Transitions ◽  
Phase Separation ◽  
Liquid Phase ◽  
Ammonium Sulfate ◽  
Particle Surface ◽  
Dicarboxylic Acids ◽  
Liquid Phase Separation ◽  
Model Systems ◽  
Second Phase ◽  
Liquid Liquid Phase Separation

Abstract. Knowledge of the physical state and morphology of internally mixed organic/inorganic aerosol particles is still largely uncertain. To obtain more detailed information on liquid-liquid phase separation (LLPS) and morphology of the particles, we investigated complex mixtures of atmospherically relevant dicarboxylic acids containing 5–7 carbon atoms (C5, C6 and C7) having oxygen-to-carbon atomic ratios (O:C) of 0.80, 0.67, and 0.57, respectively, mixed with ammonium sulfate (AS). With micrometer-sized particles of C5/AS/H2O, C6/AS/H2O and C7/AS/H2O as model systems deposited on a hydrophobically coated substrate, laboratory experiments were conducted for various organic-to-inorganic dry mass ratios (OIR) using optical microscopy and Raman spectroscopy. When exposed to cycles of relative humidity (RH), each system showed significantly different phase transitions. While the C5/AS/H2O particles showed no LLPS with OIR = 2:1, 1:1 and 1:4 down to 20% RH, the C6/AS/H2O and C7/AS/H2O particles exhibit LLPS upon drying at RH 50% to 85% and ~90%, respectively, via spinodal decomposition, growth of a second phase from the particle surface or nucleation-and-growth mechanisms depending on the OIR. This suggests that LLPS commonly occurs within the range of O:C<0.7 in tropospheric organic-inorganic aerosols. To support the comparison and interpretation of the experimentally observed phase transitions, thermodynamic equilibrium calculations were performed with the AIOMFAC model. For the C7/AS/H2O and C6/AS/H2O systems, the calculated phase diagrams agree well with the observations while for the C5/AS/H2O system LLPS is predicted by the model at RH below 60% and higher AS concentration, but was not observed in the experiments. Both core-shell structures and partially engulfed structures were observed for the investigated particles, suggesting that such morphologies might also exist in tropospheric aerosols.

An intrinsically disordered pathological prion variant Y145Stop converts into self-seeding amyloids via liquid–liquid phase separation

2021 ◽  
Vol 118 (45) ◽  
pp. e2100968118
Author(s):  
Aishwarya Agarwal ◽  
Sandeep K. Rai ◽  
Anamika Avni ◽  
Samrat Mukhopadhyay
Keyword(s):  
Phase Transitions ◽  
Phase Separation ◽  
Liquid Phase ◽  
Phase Behavior ◽  
Intrinsically Disordered Proteins ◽  
Liquid Phase Separation ◽  
Disordered Proteins ◽  
Cell Physiology ◽  
Intrinsically Disordered ◽  
Liquid Liquid Phase Separation

Biomolecular condensation via liquid–liquid phase separation of intrinsically disordered proteins/regions (IDPs/IDRs) along with other biomolecules is proposed to control critical cellular functions, whereas aberrant phase transitions are associated with a range of neurodegenerative diseases. Here, we show that a disease-associated stop codon mutation of the prion protein (PrP) at tyrosine 145 (Y145Stop), resulting in a truncated, highly disordered, N-terminal IDR, spontaneously phase-separates into dynamic liquid-like droplets. Phase separation of this highly positively charged N-terminal segment is promoted by the electrostatic screening and a multitude of weak, transient, multivalent, intermolecular interactions. Single-droplet Raman measurements, in conjunction with an array of bioinformatic, spectroscopic, microscopic, and mutagenesis studies, revealed a highly mobile internal organization within the liquid-like condensates. The phase behavior of Y145Stop is modulated by RNA. Lower RNA:protein ratios promote condensation at a low micromolar protein concentration under physiological conditions. At higher concentrations of RNA, phase separation is abolished. Upon aging, these highly dynamic liquid-like droplets gradually transform into ordered, β-rich, amyloid-like aggregates. These aggregates formed via phase transitions display an autocatalytic self-templating characteristic involving the recruitment and binding-induced conformational conversion of monomeric Y145Stop into amyloid fibrils. In contrast to this intrinsically disordered truncated variant, the wild-type full-length PrP exhibits a much lower propensity for both condensation and maturation into amyloids, hinting at a possible protective role of the C-terminal domain. Such an interplay of molecular factors in modulating the protein phase behavior might have much broader implications in cell physiology and disease.

scholarly journals Observations on hygroscopic growth and phase transitions of mixed 1, 2, 6-hexanetriol/(NH4</sub>)<sub>2</sub>SO<sub>4</sub> particles: Investigation of liquid-liquid phase separation (LLPS) dynamic process and mechanism and secondary LLPS

2021 ◽  
Author(s):  
Shuai-Shuai Ma ◽  
Zhe Chen ◽  
Shu-Feng Pang ◽  
Yun-Hong Zhang
Keyword(s):  
Phase Transitions ◽  
Phase Separation ◽  
Liquid Phase ◽  
Liquid Phase Separation ◽  
Solution Phase ◽  
High Time Resolution ◽  
Hygroscopic Growth ◽  
Inorganic Particles ◽  
Inorganic Components ◽  
Liquid Liquid Phase Separation

Abstract. Atmospheric aerosols consisting of organic and inorganic components may undergo liquid-liquid phase separation (LLPS) and liquid-solid phase transitions during ambient relative humidity (RH) fluctuation. However, the knowledge of dynamic phase evolution processes for mixed organic-inorganic particles is scarce. Here we present a universal and visualized observation on LLPS, efflorescence and deliquescence transitions as well as hygroscopic growth of mixed 1, 2, 6-hexanetriol/ammonium sulfate (AS) particles with different organic-inorganic mole ratios (OIR = 1:4, 1:2, 1:1, 2:1 and 4:1) with the high time resolution (0.5 s), using an optical microscope with a video camera. The optical images suggest that an inner AS solution phase is surrounded by an outer organic-rich phase after LLPS for all mixed particles. The LLPS mechanism for particles with different OIRs differs, meanwhile, multiple mechanisms may dominate successively in individual particles with a certain OIR, somewhat inconsistent with earlier observations by literature. More importantly, another phase separation in inner AS solution phase, defined as secondary LLPS here, is observed for OIR = 1:1, 1:2 and 1:4 particles. The secondary LLPS may be attributed to the formation of more concentrated AS inclusions in the inner phase, and becomes more obvious with decreasing RH and increasing AS mole fraction. Furthermore, the changes in size and amount of AS inclusions during LLPS are quantitatively characterized, which further illustrate the equilibrium partitioning process of organic and inorganic components. The experimental results have significant implications for revelation of complex phase transitions of internally mixed atmospheric particles and evaluation of liquid-liquid and liquid-solid equilibria in thermodynamic models.

scholarly journals Observations on hygroscopic growth and phase transitions of mixed 1, 2, 6-hexanetriol ∕ (NH<sub>4</sub>)<sub>2</sub>SO<sub>4</sub> particles: investigation of the liquid–liquid phase separation (LLPS) dynamic process and mechanism and secondary LLPS during the dehumidification

2021 ◽  
Vol 21 (12) ◽  
pp. 9705-9717
Author(s):  
Shuaishuai Ma ◽  
Zhe Chen ◽  
Shufeng Pang ◽  
Yunhong Zhang
Keyword(s):  
Phase Transitions ◽  
Phase Separation ◽  
Liquid Phase ◽  
Liquid Phase Separation ◽  
Solution Phase ◽  
High Time Resolution ◽  
Hygroscopic Growth ◽  
Inorganic Particles ◽  
Inorganic Components ◽  
Liquid Liquid Phase Separation

Abstract. Atmospheric aerosols consisting of organic and inorganic components may undergo liquid–liquid phase separation (LLPS) and liquid–solid phase transitions during ambient relative humidity (RH) fluctuation. However, the knowledge of dynamic phase evolution processes for mixed organic–inorganic particles is scarce. Here we present a universal and visualized observation of LLPS, efflorescence and deliquescence transitions as well as hygroscopic growth of laboratory-generated mixed 1, 2, 6-hexanetriol / ammonium sulfate (AS) particles with different organic–inorganic mole ratios (OIR = 1:4, 1:2, 1:1, 2:1 and 4:1) with high time resolution (0.5 s) using an optical microscope operated with a video camera. The optical images suggest that an inner AS solution phase is surrounded by an outer organic-rich phase after LLPS for all mixed particles. The LLPS mechanism for particles with different OIRs is found to be distinct; meanwhile, multiple mechanisms may dominate successively in individual particles with a certain OIR, somewhat inconsistently with previously reported observations. More importantly, another phase separation in the inner AS solution phase, defined as secondary LLPS here, is observed for OIR = 1:1, 1:2 and 1:4 particles. The secondary LLPS may be attributed to the formation of more concentrated AS inclusions in the inner phase and becomes more obvious with decreasing RH and increasing AS mole fraction. Furthermore, the changes in size and number of AS inclusions during LLPS are quantitatively characterized, which further illustrate the equilibrium partitioning process of organic and inorganic components. These experimental results have significant implications for the revelation of complex phase transitions of internally mixed atmospheric particles and evaluation of liquid–liquid and liquid–solid equilibria in thermodynamic models.

scholarly journals Observations and implications of liquid–liquid phase separation at high relative humidities in secondary organic material produced by α-pinene ozonolysis without inorganic salts

2015 ◽  
Vol 15 (22) ◽  
pp. 33379-33405 ◽  
Author(s):  
L. Renbaum-Wolff ◽  
M. Song ◽  
C. Marcolli ◽  
Y. Zhang ◽  
P. F. Liu ◽  
...  
Keyword(s):  
Phase Separation ◽  
Liquid Phase ◽  
Organic Material ◽  
Phase State ◽  
Liquid Phase Separation ◽  
Inorganic Salts ◽  
Laboratory Studies ◽  
Rich Phase ◽  
Liquid Phases ◽  
Liquid Liquid Phase Separation

Abstract. Particles consisting of secondary organic material (SOM) are abundant in the atmosphere. To predict the role of these particles in climate, visibility, and atmospheric chemistry, information on particle phase state (i.e. single liquid, two liquids, solid and so forth) is needed. This paper focuses on the phase state of SOM particles free of inorganic salts produced by the ozonolysis of α-pinene. Phase transitions were investigated both in the laboratory and with a thermodynamic model over the range of < 0.5 % to 100 % relative humidity (RH) at 290 K. In the laboratory studies, a single phase was observed from 0 to 95 % RH while two liquid phases were observed above 95 % RH. For increasing RH, the mechanism of liquid–liquid phase separation (LLPS) was spinodal decomposition. The RH range at which two liquid phases were observed did not depend on the direction of RH change. In the modelling studies at low RH values, the SOM took up hardly any water and was a single organic-rich phase. At high RH values, the SOM underwent LLPS to form an organic-rich phase and an aqueous phase, consistent with the laboratory studies. The presence of LLPS at high RH-values has consequences for the cloud condensation nuclei (CCN) activity of SOM particles. In the simulated Köhler curves for SOM particles, two local maxima are observed. Depending on the composition of the SOM, the first or second maximum can determine the critical supersaturation for activation. The presence of LLPS at high RH-values can explain inconsistencies between measured CCN properties of SOM particles and hygroscopic growth measured below water saturation.

scholarly journals Liquid-liquid phase separation and morphology of internally mixed dicarboxylic acids/ammonium sulfate/water particles

2012 ◽  
Vol 12 (5) ◽  
pp. 2691-2712 ◽  
Author(s):  
M. Song ◽  
C. Marcolli ◽  
U. K. Krieger ◽  
A. Zuend ◽  
T. Peter
Keyword(s):  
Phase Transitions ◽  
Phase Separation ◽  
Liquid Phase ◽  
Ammonium Sulfate ◽  
Particle Surface ◽  
Dicarboxylic Acids ◽  
Liquid Phase Separation ◽  
Model Systems ◽  
Second Phase ◽  
Liquid Liquid Phase Separation

Abstract. Knowledge of the physical state and morphology of internally mixed organic/inorganic aerosol particles is still largely uncertain. To obtain more detailed information on liquid-liquid phase separation (LLPS) and morphology of the particles, we investigated complex mixtures of atmospherically relevant dicarboxylic acids containing 5, 6, and 7 carbon atoms (C5, C6 and C7) having oxygen-to-carbon atomic ratios (O:C) of 0.80, 0.67, and 0.57, respectively, mixed with ammonium sulfate (AS). With micrometer-sized particles of C5/AS/H2O, C6/AS/H2O and C7/AS/H2O as model systems deposited on a hydrophobically coated substrate, laboratory experiments were conducted for various organic-to-inorganic dry mass ratios (OIR) using optical microscopy and Raman spectroscopy. When exposed to cycles of relative humidity (RH), each system showed significantly different phase transitions. While the C5/AS/H2O particles showed no LLPS with OIR = 2:1, 1:1 and 1:4 down to 20% RH, the C6/AS/H2O and C7/AS/H2O particles exhibit LLPS upon drying at RH 50 to 85% and ~90%, respectively, via spinodal decomposition, growth of a second phase from the particle surface or nucleation-and-growth mechanisms depending on the OIR. This suggests that LLPS commonly occurs within the range of O:C < 0.7 in tropospheric organic/inorganic aerosols. To support the comparison and interpretation of the experimentally observed phase transitions, thermodynamic equilibrium calculations were performed with the AIOMFAC model. For the C7/AS/H2O and C6/AS/H2O systems, the calculated phase diagrams agree well with the observations while for the C5/AS/H2O system LLPS is predicted by the model at RH below 60% and higher AS concentration, but was not observed in the experiments. Both core-shell structures and partially engulfed structures were observed for the investigated particles, suggesting that such morphologies might also exist in tropospheric aerosols.

scholarly journals Phase Transitions by an Abundant Protein in the Anammox Extracellular Matrix Mediate Cell-to-Cell Aggregation and Biofilm Formation

mBio ◽  
2020 ◽  
Vol 11 (5) ◽  
Author(s):  
Thomas Seviour ◽  
Lan Li Wong ◽  
Yang Lu ◽  
Sudarsan Mugunthan ◽  
Qiaohui Yang ◽  
...  
Keyword(s):  
Phase Transitions ◽  
Phase Separation ◽  
Liquid Phase ◽  
Biofilm Formation ◽  
Surface Protein ◽  
Extracellular Proteins ◽  
Liquid Phase Separation ◽  
Liquid Droplets ◽  
Ammonium Oxidation ◽  
Liquid Liquid Phase Separation

ABSTRACT This study describes the first direct functional assignment of a highly abundant extracellular protein from a key environmental and biotechnological biofilm performing an anaerobic ammonium oxidation (anammox) process. Expression levels of Brosi_A1236, belonging to a class of proteins previously suggested to be cell surface associated, were in the top one percentile of all genes in the “Candidatus Brocadia sinica”-enriched biofilm. The Brosi_A1236 structure was computationally predicted to consist of immunoglobulin-like anti-parallel β-strands, and circular dichroism conducted on the isolated surface protein indicated that β-strands are the dominant higher-order structure. The isolated protein was stained positively by the β-sheet-specific stain thioflavin T, along with cell surface- and matrix-associated regions of the biofilm. The surface protein has a large unstructured content, including two highly disordered domains at its C terminus. The disordered domains bound to the substratum and thereby facilitated the adhesion of negatively charged latex microspheres, which were used as a proxy for cells. The disordered domains and isolated whole surface protein also underwent liquid-liquid phase separation to form liquid droplets in suspension. Liquid droplets of disordered protein wet the surfaces of microspheres and bacterial cells and facilitated their coalescence. Furthermore, the surface layer protein formed gels as well as ordered crystalline structures. These observations suggest that biophysical remodeling through phase transitions promotes aggregation and biofilm formation. IMPORTANCE By employing biophysical and liquid-liquid phase separation concepts, this study revealed how a highly abundant extracellular protein enhances the key environmental and industrial bioprocess of anaerobic ammonium oxidation (anammox). Extracellular proteins of environmental biofilms are understudied and poorly annotated in public databases. Understanding the function of extracellular proteins is also increasingly important for improving bioprocesses and resource recovery. Here, protein functions were assessed based on theoretical predictions of intrinsically disordered domains, known to promote adhesion and liquid-liquid phase separation, and available surface layer protein properties. A model is thus proposed to explain how the protein promotes aggregation and biofilm formation by extracellular matrix remodeling and phase transitions. This work provides a strong foundation for functional investigations of extracellular proteins involved in biofilm development.

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