scholarly journals Gene selection in cancer classification using hybrid method based on Particle Swarm Optimization (PSO), Artificial Bee Colony (ABC) feature selection and support vector machine

2019 ◽  
Author(s):  
D. A. Utami ◽  
Z. Rustam
Keyword(s):  
Support Vector Machine ◽  
Feature Selection ◽  
Particle Swarm Optimization ◽  
Hybrid Method ◽  
Artificial Bee Colony ◽  
Gene Selection ◽  
Cancer Classification ◽  
Support Vector ◽  
Swarm Optimization ◽  
Bee Colony

scholarly journals Cancer Feature Selection and Classification Using a Binary Quantum-Behaved Particle Swarm Optimization and Support Vector Machine

2016 ◽  
Vol 2016 ◽  
pp. 1-9 ◽  
Author(s):  
Maolong Xi ◽  
Jun Sun ◽  
Li Liu ◽  
Fangyun Fan ◽  
Xiaojun Wu
Keyword(s):  
Support Vector Machine ◽  
Particle Swarm Optimization ◽  
Gene Selection ◽  
Optimization Problems ◽  
Particle Swarm ◽  
Cancer Classification ◽  
Support Vector ◽  
Swarm Optimization ◽  
Binary Pso ◽  
Leave One Out

This paper focuses on the feature gene selection for cancer classification, which employs an optimization algorithm to select a subset of the genes. We propose a binary quantum-behaved particle swarm optimization (BQPSO) for cancer feature gene selection, coupling support vector machine (SVM) for cancer classification. First, the proposed BQPSO algorithm is described, which is a discretized version of original QPSO for binary 0-1 optimization problems. Then, we present the principle and procedure for cancer feature gene selection and cancer classification based on BQPSO and SVM with leave-one-out cross validation (LOOCV). Finally, the BQPSO coupling SVM (BQPSO/SVM), binary PSO coupling SVM (BPSO/SVM), and genetic algorithm coupling SVM (GA/SVM) are tested for feature gene selection and cancer classification on five microarray data sets, namely, Leukemia, Prostate, Colon, Lung, and Lymphoma. The experimental results show that BQPSO/SVM has significant advantages in accuracy, robustness, and the number of feature genes selected compared with the other two algorithms.

An Improved Intelligent Approach to Enhance the Sentiment Classifier for Knowledge Discovery Using Machine Learning

2020 ◽  
Vol 10 (4) ◽  
pp. 582-593
Author(s):  
Midde Venkateswarlu Naik ◽  
D. Vasumathi ◽  
A.P. Siva Kumar
Keyword(s):  
Support Vector Machine ◽  
Feature Selection ◽  
Global Warming ◽  
Particle Swarm Optimization ◽  
Sentiment Analysis ◽  
Optimization Technique ◽  
Particle Swarm ◽  
Sentiment Classification ◽  
Support Vector ◽  
Swarm Optimization

Aims: The proposed research work is on an evolutionary enhanced method for sentiment or emotion classification on unstructured review text in the big data field. The sentiment analysis plays a vital role for current generation of people for extracting valid decision points about any aspect such as movie ratings, education institute or politics ratings, etc. The proposed hybrid approach combined the optimal feature selection using Particle Swarm Optimization (PSO) and sentiment classification through Support Vector Machine (SVM). The current approach performance is evaluated with statistical measures, such as precision, recall, sensitivity, specificity, and was compared with the existing approaches. The earlier authors have achieved an accuracy of sentiment classifier in the English text up to 94% as of now. In the proposed scheme, an average accuracy of sentiment classifier on distinguishing datasets outperformed as 99% by tuning various parameters of SVM, such as constant c value and kernel gamma value in association with PSO optimization technique. The proposed method utilized three datasets, such as airline sentiment data, weather, and global warming datasets, that are publically available. The current experiment produced results that are trained and tested based on 10- Fold Cross-Validations (FCV) and confusion matrix for predicting sentiment classifier accuracy. Background: The sentiment analysis plays a vital role for current generation people for extracting valid decisions about any aspect such as movie rating, education institute or even politics ratings, etc. Sentiment Analysis (SA) or opinion mining has become fascinated scientifically as a research domain for the present environment. The key area is sentiment classification on semi-structured or unstructured data in distinguish languages, which has become a major research aspect. User-Generated Content [UGC] from distinguishing sources has been hiked significantly with rapid growth in a web environment. The huge user-generated data over social media provides substantial value for discovering hidden knowledge or correlations, patterns, and trends or sentiment extraction about any specific entity. SA is a computational analysis to determine the actual opinion of an entity which is expressed in terms of text. SA is also called as computation of emotional polarity expressed over social media as natural text in miscellaneous languages. Usually, the automatic superlative sentiment classifier model depends on feature selection and classification algorithms. Methods: The proposed work used Support vector machine as classification technique and particle swarm optimization technique as feature selection purpose. In this methodology, we tune various permutations and combination parameters in order to obtain expected desired results with kernel and without kernel technique for sentiment classification on three datasets, including airline, global warming, weather sentiment datasets, that are freely hosted for research practices. Results: In the proposed scheme, The proposed method has outperformed with 99.2% of average accuracy to classify the sentiment on different datasets, among other machine learning techniques. The attained high accuracy in classifying sentiment or opinion about review text proves superior effectiveness over existing sentiment classifiers. The current experiment produced results that are trained and tested based on 10- Fold Cross-Validations (FCV) and confusion matrix for predicting sentiment classifier accuracy. Conclusion: The objective of the research issue sentiment classifier accuracy has been hiked with the help of Kernel-based Support Vector Machine (SVM) based on parameter optimization. The optimal feature selection to classify sentiment or opinion towards review documents has been determined with the help of a particle swarm optimization approach. The proposed method utilized three datasets to simulate the results, such as airline sentiment data, weather sentiment data, and global warming data that are freely available datasets.

Selection of Pathway Markers for Cancer Using Collaborative Binary Multi-Swarm Optimization

2018 ◽  
pp. 337-363
Author(s):  
Prativa Agarwalla ◽  
Sumitra Mukhopadhyay
Keyword(s):  
Particle Swarm Optimization ◽  
Artificial Bee Colony ◽  
Gene Selection ◽  
Heuristic Algorithms ◽  
Particle Swarm ◽  
High Accuracy ◽  
Marker Genes ◽  
Binary Particle Swarm Optimization ◽  
Swarm Optimization ◽  
Bee Colony

Pathway information for cancer detection helps to find co-regulated gene groups whose collective expression is strongly associated with cancer development. In this paper, a collaborative multi-swarm binary particle swarm optimization (MS-BPSO) based gene selection technique is proposed that outperforms to identify the pathway marker genes. We have compared our proposed method with various statistical and pathway based gene selection techniques for different popular cancer datasets as well as a detailed comparative study is illustrated using different meta-heuristic algorithms like binary coded particle swarm optimization (BPSO), binary coded differential evolution (BDE), binary coded artificial bee colony (BABC) and genetic algorithm (GA). Experimental results show that the proposed MS-BPSO based method performs significantly better and the improved multi swarm concept generates a good subset of pathway markers which provides more effective insight to the gene-disease association with high accuracy and reliability.

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